mRNA_H-elongata_contig52545.12562.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: D7G6V6_ECTSI (Cysteine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V6_ECTSI) HSP 1 Score: 119 bits (297), Expect = 3.260e-30 Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 3
Query: 3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFVQ 212
LFVGCS+AMNCVGAV AARR G G +IVTVLCDSG+RGISRFWNR+F+EAR LKWP P TL NLDF++
Sbjct: 349 LFVGCSAAMNCVGAVAAARRAGTGKRIVTVLCDSGSRGISRFWNREFIEARGLKWPLPNDETLENLDFIE 418
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A7S2UYT2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYT2_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.500e-21 Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 3
Query: 3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFV 209
LFVG SSA+NCVGAVLAA+ LGPGH IVT+LCDSG R SR W++KF++ L+WP P + +LDF+
Sbjct: 51 LFVGSSSAINCVGAVLAAKHLGPGHTIVTILCDSGQRHRSRLWSQKFIKDFGLQWPEPA--QVASLDFL 117
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A6V1K2C6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K2C6_HETAK) HSP 1 Score: 93.6 bits (231), Expect = 8.450e-21 Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 3
Query: 3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFV 209
LFVG SSA+NCVGAVLAA+ LGPGH +VTVLCDSG R + RFW+R + R L+WP + LH++DF+
Sbjct: 347 LFVGASSALNCVGAVLAAQSLGPGHTVVTVLCDSGQRHLGRFWDRATLARRGLRWPGEK--DLHSIDFL 413
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A835Z4W8_9STRA (Putative cysteine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W8_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.200e-19 Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 3
Query: 3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFV 209
L +G SSAMN GAV AAR+LG GH IVTVLCD G R SRFWNR FVE R L+WP P+ L +LDFV
Sbjct: 317 LLLGSSSAMNAAGAVKAARQLGSGHTIVTVLCDHGARYASRFWNRAFVEGRGLQWPEPD--QLLSLDFV 383
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A4D9DD93_9STRA (PALP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DD93_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.870e-17 Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 3
Query: 3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFVQ-NGR 221
+FVG S+AMN VG V AAR LGPGH +VTVLCDSG R ++RFWNR+ VE L WP NL+F+Q NG+
Sbjct: 339 MFVGSSTAMNLVGCVRAARVLGPGHTVVTVLCDSGQRHLTRFWNRRVVEGAGLIWPET---PPVNLNFLQRNGQ 409
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A5B8MMS2_9CHLO (Cysteine synthase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MMS2_9CHLO) HSP 1 Score: 81.6 bits (200), Expect = 1.530e-16 Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 3
Query: 3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFV 209
LFVG SSAMNCVGA+ AR+LGPGH IVTVLCD G R +S+F NR ++E L SP+G +LDFV
Sbjct: 324 LFVGSSSAMNCVGALKVARKLGPGHTIVTVLCDGGQRHLSKFHNRAYLEKMNL---SPKG--CESLDFV 387
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A1Y1Y8I3_9FUNG (OAS-TL 2 protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y8I3_9FUNG) HSP 1 Score: 80.1 bits (196), Expect = 5.780e-16 Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 3
Query: 3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFVQ 212
LF+G SSA+NCV AV AR+LGPGH IVT+LCDSG R +++FWN +++ L +P+ NL F+Q
Sbjct: 335 LFIGSSSAINCVAAVRMARQLGPGHTIVTILCDSGQRHLTKFWNDEYIANANLSTEAPD-----NLSFIQ 399
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A6G0WXC4_9STRA (PALP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXC4_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.440e-15 Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 3
Query: 3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVE 149
+FVGCSSAMNCV AV AAR+LGPGH IVT+LCDSG R +++FWN +E
Sbjct: 317 IFVGCSSAMNCVAAVRAARKLGPGHTIVTILCDSGQRHLTKFWNDAHLE 365
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A015LFH0_RHIIW (Putative cysteine synthase n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015LFH0_RHIIW) HSP 1 Score: 77.4 bits (189), Expect = 3.170e-15 Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 3
Query: 3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTLHNLDFVQ 212
LF+G SSA+NCVG V AR+LGPGH+IVT+LCDSG R +++FWN ++++ + EG L+F++
Sbjct: 246 LFIGSSSAINCVGCVRVARKLGPGHRIVTILCDSGQRHLTKFWNDEYLKQNNIYPKEEEG-----LNFIK 310
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Match: A0A1Z5KKY4_FISSO (Cysteine synthase A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKY4_FISSO) HSP 1 Score: 77.8 bits (190), Expect = 4.450e-15 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 3
Query: 3 LFVGCSSAMNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPEGRTL 191
L+VG SSAMN VGA+ A +L PG ++VTV+CDSG+R ++RFWNR F+ R L+WP + + L
Sbjct: 384 LWVGSSSAMNVVGAIETAWKLSPGSRVVTVICDSGSRHLTRFWNRDFILERGLRWPRDQEKEL 446 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52545.12562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52545.12562.1 >prot_H-elongata_contig52545.12562.1 ID=prot_H-elongata_contig52545.12562.1|Name=mRNA_H-elongata_contig52545.12562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp MNCVGAVLAARRLGPGHQIVTVLCDSGNRGISRFWNRKFVEARRLKWPSPback to top mRNA from alignment at H-elongata_contig52545:2090..2502+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52545.12562.1 ID=mRNA_H-elongata_contig52545.12562.1|Name=mRNA_H-elongata_contig52545.12562.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=413bp|location=Sequence derived from alignment at H-elongata_contig52545:2090..2502+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52545:2090..2502+ >mRNA_H-elongata_contig52545.12562.1 ID=mRNA_H-elongata_contig52545.12562.1|Name=mRNA_H-elongata_contig52545.12562.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig52545:2090..2502+ (Himanthalia elongata Himel1 dioecious)back to top |