mRNA_H-elongata_contig52543.12560.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52543.12560.1 vs. uniprot
Match: A0A6H5LCT1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT1_9PHAE) HSP 1 Score: 150 bits (378), Expect = 1.060e-39 Identity = 91/222 (40.99%), Postives = 125/222 (56.31%), Query Frame = 1
Query: 4 GFRVLGSYCEQLKISSPGTVCDVEWDSGGRFERCFVMLGLSAHVAVHSPQQVFTMDSAHLKGD*NGVMLTLSVKDGNNCVVYVATAITKKEDGPSYEYLLGNAKRNTEMGEWITRETTTCITDGHNGSDYALPKLVPLAESRRCVHHLLKNVPA-VGMVK---VFDAARHPTKSGFDSSMKQLHRL--KPEAHDKLTSI-PHEKWASYAARANVTWDQTMLN 648
G+R++ SYC++L PG+V VE ++ GRF FVMLG +AH AV SP +V MD HLKG+ NG+MLTL+ KD NN ++VAT I KED Y+ LL N K+N +M + + TT TD H G+ AL PLA+ R C+ HL+ N+ +G VF AAR PTK + +KQ H L KP A+ ++ +WA + + N
Sbjct: 142 GYRIMDSYCKELVKDCPGSVAVVERETTGRFRSVFVMLGRAAHAAVRSPIKVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNLKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIGSNANSWVFFAARAPTKKQCEDILKQ-HVLPSKPRAYVQIIDDWKRHEWAHSGGPPDTALQDVVTN 362
BLAST of mRNA_H-elongata_contig52543.12560.1 vs. uniprot
Match: A0A6H5JUM0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM0_9PHAE) HSP 1 Score: 140 bits (352), Expect = 5.800e-36 Identity = 88/209 (42.11%), Postives = 122/209 (58.37%), Query Frame = 1
Query: 4 GFRVLGSYCEQLKISSPGTVCDVEWDSGGRFERCFVMLGLSAHVAVHSPQQVFTMDSAHLKGD*NGVMLTLSVKDGNNCVVYVATAITKKEDGPSYEYLLGNAKRNTEMGEWITRETTTCITDGHNGSDYALPKLVPLAESRRCVHHLLKNVPA-VGMVK---VFDAARHPTKSGFDSSMKQLHRL--KPEAHDKLTSIPHEKWASYAA 612
G+R++ SYC++L PG V V+ ++ GRF FVMLG +A AV SP +V MD HLKG+ NG+MLTL+ KD +N ++ VAT I KED Y+ LL N K N +M + + TT TD H G+ AL + PLA+ R C+ HL+ N+ +G VF AAR PTK + +KQ H L KP A+ ++ KW +A+
Sbjct: 184 GYRIMDSYCKELVKDCPGPVAVVQRETTGRFPSVFVMLGRAARAAVRSPVKVVGMDGGHLKGEWNGMMLTLTCKDAHNEMINVATVIGPKEDTSLYKTLLRNCK-NPKMRDLLEDSKTTFFTDQHKGATCALRREAPLAQHRYCLRHLILNLEEKIGSNANSWVFFAARAPTKKQCEDILKQ-HVLPSKPRAYVQIIDDDW-KWHEWAS 389
BLAST of mRNA_H-elongata_contig52543.12560.1 vs. uniprot
Match: A0A6H5L490_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L490_9PHAE) HSP 1 Score: 136 bits (343), Expect = 1.380e-33 Identity = 69/152 (45.39%), Postives = 93/152 (61.18%), Query Frame = 1
Query: 4 GFRVLGSYCEQLKISSPGTVCDVEWDSGGRFERCFVMLGLSAHVAVHSPQQVFTMDSAHLKGD*NGVMLTLSVKDGNNCVVYVATAITKKEDGPSYEYLLGNAKRNTEMGEWITRETTTCITDGHNGSDYALPKLVPLAESRRCVHHLLKNV 459
G+R++ SYC++L PG+V VE ++ GRF FVML +AH AV SP +V MD HLKG+ NG+MLTL+ KD NN ++VA I KED Y LL N K+N +M + + TT TD H + AL PLA+ R C+ HL+ N+
Sbjct: 145 GYRIMDSYCKELVKDCPGSVAVVERETTGRFRSVFVMLRRAAHAAVRSPMKVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVAAVIGPKEDTSLYNTLLRNCKKNPKMRDLLEDSKTTFFTDQHKEATCALRGEAPLAQHRHCLRHLILNI 296
BLAST of mRNA_H-elongata_contig52543.12560.1 vs. uniprot
Match: A0A6H5JAG6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG6_9PHAE) HSP 1 Score: 112 bits (280), Expect = 9.850e-26 Identity = 63/163 (38.65%), Postives = 93/163 (57.06%), Query Frame = 1
Query: 4 GFRVLGSYCEQLKISSPGTVCDVEWDSGGR----FERCFVMLGLSAHVAVHSPQQVFTMDSAHLKGD*NGVMLTLSVKDGNNCVVYVATAITKKEDGPSYEYLLGNAKRNTEMGEWITRETTTCITDGHNGSDYALPKLVPLAESRRCVHHLLKNVPAVGMVK 480
G RV S +LK+++ + + + G R F R +MLG +A AV SP +V D HLKG+ NG++LTL+ KD NN +++VAT I KED Y+ LL N K+N +M + + T TD H G+ AL PLA+ R C+ H++ N+ +G V+
Sbjct: 116 GLRVSYSAASRLKVAATRASKE-QLEHGYRIMDSFRRVILMLGRAARAAVRSPMKVVGKDGGHLKGEWNGMVLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTIFFTDQHKGATCALRGEAPLAQHRYCLRHIILNIEKIGSVQ 277
BLAST of mRNA_H-elongata_contig52543.12560.1 vs. uniprot
Match: A0A6H5K734_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K734_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 2.700e-20 Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query: 157 VFTMDSAHLKGD*NGVMLTLSVKDGNNCVVYVATAITKKEDGPSYEYLLGNAKRNTEMGEWITRETTTCITDGHNGSDYALPKLVPLAESRRCVHHLLKN 456
V MD HLKG+ NG+MLTL+ KD NN +++VAT I KED Y+ LL N K+N +M + + TT TD H G+ AL PLA+ R C+ HL+ N
Sbjct: 9 VVGMDGGHLKGEWNGMMLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILN 108
BLAST of mRNA_H-elongata_contig52543.12560.1 vs. uniprot
Match: A0A6H5K043_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K043_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 2.750e-18 Identity = 67/171 (39.18%), Postives = 88/171 (51.46%), Query Frame = 1
Query: 157 VFTMDSAHLKGD*NGVMLTLSVKDGNNCVVYVATAITKKEDGPSYEYLLGNAKRNTEMGEWITRETTTCITDGHNGSDYALPKLVPLAESRRCVHHLLKNVPA-VGMVK---VFDAARHPTKSGFDSSMKQLHRL--KPEAHDKLTSI-PHEKWASYAARANVTWDQTMLN 648
V MD HLKG+ NGVMLTL+ KD NN +VAT I KED ++ LL N K N +M + + TT TD H G+ AL PLA+ R C+ HLL N+ +G VF AR TK F+ +KQ H L KP A+ ++ +WA A + + N
Sbjct: 10 VVGMDGGHLKGEWNGVMLTLTCKDANNENSHVATVIGPKEDTSLHKTLLRNWK-NPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLLLNLEEEIGSNANSWVFFVARATTKKQFEDILKQ-HVLPSKPRAYVQIIDDWKRHEWAHSGAPPDTALQDVVTN 178
BLAST of mRNA_H-elongata_contig52543.12560.1 vs. uniprot
Match: A0A6P5GH66_ANACO (uncharacterized protein LOC109721441 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GH66_ANACO) HSP 1 Score: 82.0 bits (201), Expect = 1.610e-14 Identity = 55/208 (26.44%), Postives = 95/208 (45.67%), Query Frame = 1
Query: 1 EGFRVLGSYCEQLKISSPGTVCDV-EWDSGGRFERCFVMLGLSAHVAVHSPQQVFTMDSAHLKGD*NGVMLTLSVKDGNNCVVYVATAITKKEDGPSYEYLLGNAKRNTEMGEWITRETTTCITDGHNGSDYALPKLVPLAESRRCVHHL-------LKNVPAVGMVKVFDAARHPTKSGFDSSMKQLHRLKPEAHDKLTSIPHEKWA 600
EG+ +L S+CEQ+K+S+PG++ V S RF++ F+ S H ++S + ++ + LK G +L+++ D + + VA I E S+ + L E T ++ G G + A+ + P A C+ HL KN V ++ + AA T GF M ++ + P+A K+ P +WA
Sbjct: 147 EGYCLLPSFCEQIKLSNPGSIAQVYTTGSDHRFQKLFISFNASIHGFINSCLPIISLGAMELKSKYLGTLLSITSFDADGGLFPVAFGIVDLETDESWLWFLSEFHNLLERSNETKIPKLTFLSSGEKGINEAVRRKFPTANHAICMRHLTDSINKEFKNSRLVQLL--WKAACSITTVGFRERMAEIEEVSPDAAKKIQLFPPNRWA 352
BLAST of mRNA_H-elongata_contig52543.12560.1 vs. uniprot
Match: A0A6I9SAJ7_ELAGV (uncharacterized protein LOC105055884 n=2 Tax=Arecaceae TaxID=4710 RepID=A0A6I9SAJ7_ELAGV) HSP 1 Score: 77.0 bits (188), Expect = 8.490e-13 Identity = 57/208 (27.40%), Postives = 95/208 (45.67%), Query Frame = 1
Query: 1 EGFRVLGSYCEQLKISSPGTVCDV-EWDSGGRFERCFVMLGLSAHVAVHSPQQVFTMDSAHLKGD*NGVMLTLSVKDGNNCVVYVATAITKKEDGPSYEYLLGNAKRNTEMGEWITRETTTCITDGHNGSDYALPKLVPLAESRRCVHHL-------LKNVPAVGMVKVFDAARHPTKSGFDSSMKQLHRLKPEAHDKLTSIPHEKWA 600
EG+ +L +YCEQ+K+S+PG++ V S RF+R FV S + +H + + LK G +L+++ D + + VA I E S+ + L + E+ T T ++DG G A+ + P A C+ HL KN V ++ + AA T GF M ++ + EA ++ +P +WA
Sbjct: 147 EGYCLLPAYCEQIKLSNPGSIAQVFTTGSDHRFQRLFVSFNASINGFLHGCLPIIGLGGMELKSKYLGTLLSVTSFDADGGLFPVAFGIVDVETEESWMWFLSEFHKLLEIST-ETIPQLTVLSDGQKGIVEAVRRKFPTAYQGICMRHLTESINKEFKNGRLVQLL--WKAAYSITTIGFRERMAEIEEVCAEAAKRIQQVPPNRWA 351
BLAST of mRNA_H-elongata_contig52543.12560.1 vs. uniprot
Match: A0A6P6X0F7_COFAR (uncharacterized protein LOC113737376 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6X0F7_COFAR) HSP 1 Score: 74.3 bits (181), Expect = 7.770e-12 Identity = 58/210 (27.62%), Postives = 94/210 (44.76%), Query Frame = 1
Query: 7 FRVLGSYCEQLKISSPGTVCDVEWDSGGR-----FERCFVMLGLSAHVAVHSPQQVFTMDSAHLKGD*NGVMLTLSVKDGNNCVVYVATAITKKEDGPSYEYLLGNAKRNTEMGEWITRETTTCITDGHNGSDYALPKLVPLAESRRCVHHLLKNVPAVGMVK-----VFDAARHPTKSGFDSSMKQLHRLKPEAHDKLTSIPHEKWASY 606
+ L YC L +PG+V + + F+R FVM V++ + V +D+ HLKG G +++ +D NN + +A A+ + E S+ + L + +G I R ++D G + P E R CV H+ N K ++ AAR ++S M++LH + PEAH L+SIP WA +
Sbjct: 320 YARLRDYCATLLQRNPGSVAFIVTEKSNICKSPIFKRMFVMFTAQKEGFVNACRPVIGLDACHLKGIMGGQLMSAIGRDANNQMFPIAMALVESECKDSWGWFLDSL--TDAIGTPIERGWVF-LSDRQKGLIDCIENKYPGVEHRFCVRHMYANFKLKFKDKHLRDLMWGAARAYLPCHYESKMRELHLVAPEAHAWLSSIPANLWARH 526
BLAST of mRNA_H-elongata_contig52543.12560.1 vs. uniprot
Match: A0A6P6WVB7_COFAR (uncharacterized protein LOC113736519 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6WVB7_COFAR) HSP 1 Score: 74.3 bits (181), Expect = 7.800e-12 Identity = 58/210 (27.62%), Postives = 94/210 (44.76%), Query Frame = 1
Query: 7 FRVLGSYCEQLKISSPGTVCDVEWDSGGR-----FERCFVMLGLSAHVAVHSPQQVFTMDSAHLKGD*NGVMLTLSVKDGNNCVVYVATAITKKEDGPSYEYLLGNAKRNTEMGEWITRETTTCITDGHNGSDYALPKLVPLAESRRCVHHLLKNVPAVGMVK-----VFDAARHPTKSGFDSSMKQLHRLKPEAHDKLTSIPHEKWASY 606
+ L YC L +PG+V + + F+R FVM V++ + V +D+ HLKG G +++ +D NN + +A A+ + E S+ + L + +G I R ++D G + P E R CV H+ N K ++ AAR ++S M++LH + PEAH L+SIP WA +
Sbjct: 161 YARLRDYCATLLQRNPGSVAFIVTEKSNICKSPIFKRMFVMFTAQKEGFVNACRPVIGLDACHLKGIMGGQLMSAIGRDANNQMFPIAMALVESECKDSWGWFLDSL--TDAIGTPIERGWVF-LSDRQKGLIDCIENKYPGVEHRFCVRHMYANFKLKFKDKHLRDLMWGAARAYLPCHYESKMRELHLVAPEAHAWLSSIPTNLWARH 367 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52543.12560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52543.12560.1 >prot_H-elongata_contig52543.12560.1 ID=prot_H-elongata_contig52543.12560.1|Name=mRNA_H-elongata_contig52543.12560.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp MLTLSVKDGNNCVVYVATAITKKEDGPSYEYLLGNAKRNTEMGEWITRETback to top mRNA from alignment at H-elongata_contig52543:25..2712- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52543.12560.1 ID=mRNA_H-elongata_contig52543.12560.1|Name=mRNA_H-elongata_contig52543.12560.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2688bp|location=Sequence derived from alignment at H-elongata_contig52543:25..2712- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52543:25..2712- >mRNA_H-elongata_contig52543.12560.1 ID=mRNA_H-elongata_contig52543.12560.1|Name=mRNA_H-elongata_contig52543.12560.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig52543:25..2712- (Himanthalia elongata Himel1 dioecious)back to top |