mRNA_H-elongata_contig5254.12559.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5254.12559.1 vs. uniprot
Match: D7FWV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV3_ECTSI) HSP 1 Score: 355 bits (911), Expect = 1.090e-97 Identity = 451/1254 (35.96%), Postives = 557/1254 (44.42%), Query Frame = 1
Query: 1 QVARTTEAARGMGADTSHLYGVKDAGFKPVTAFKDAQEQCHSGYAGQLQHAFVQGVLNPVGDWQRDLRGLEGKVSAFTSVQVQHDHYRIKVEDLKIKAQQLEARAATRGDSRNAKAAAERLNRNSAKLQEVTKHYNEARENSCQGMNEAWRNRLVRMNNIVSRLIHFQEAYLGEQLMIMLGVSRILE--EAGGKQWGENTEIQAFVSRSDVRLYEGELIRKLRVMNERKWFRLVGSSLEVFDIKDKDDS----YYVVTETPVVTHIVRGVQKVDETSFRVNLA----TGDVGLHLYAMDAADAEGWCKALEKASVWDQLTSTQEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKGKNXXXXXXXXXXXXXXXXXXXXXGDANEKVPDLLDTTSKIGLGXXXXXXXGAFPAGMTGGGVPGGG--GGPRASGRMGKTMSMMGSSPAGFGGPMRGYSGHSS------------------MXXXXXXXXXPSPSMGDPRLGI-------------------------------PLGGGPPMPSMHSSLLPGMTQSGPPVMMXXXXXXXXXAPVIDPIAPGPQPPHGMMGGPGGPPMMGGPGAGRGGGWNMGNHQ----------------------FVPKFG-SMGGAEKQQGFRRSHSVGAGIPDQMHQGFVSKKSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARN---ADEETKAEEAD--GDDVVPTYVTAPAQAPXXXXXXXVYVRAAATPRKLHPVATTLPTKLPTPKFSTRSFSASSTPRXXXXXTVKTSEDK--------------RIAAISKAATXXXXXXXXXXXXXXTRKTQAPVTETQTPGRTRISSFPKPGSAWKALKKMAATGSTPSPVASGAESKGTTPRAGKD--ERVSRPPDTTTXXXXXXXXXAASPTNAVNDTERTVGGEAAGDEKXXXXXXXXXXXXXXALNLVGSSPASSDSPARSVPSASASN------ERRLAVFKSLSGPSSTGGAKXXXXXXDSIADVSSARASANSXXXXXXXXXXXXXXXXXSRGYETPGSDAKAADQVKVFRRLCVAKTPGASEAESGDAGAGVAAQRAAGRSAEQKLTFDQLMAWDEVQELLDYGSLKEAEVSGIFKEAVRTQGWE-NVGSS--AKTADLWALPGTNKDSRRAMIRAGSGSTDGRSDDEDARPKDALTQKGFMNLVKLIEELQFEKELEQDKGVGLIPGPVYVL 3420
Q+AR TEAARG+G D SH+Y V++ GFKP AFK+AQ+ HSGYAGQLQ A V+GV+ P+G+W RDL +EG V+ F ++VQHDHYR+KVEDL KA+ LEARA TRGDSR+AK AAE+L RN+ KL EVT +++ + C M AW +R MN IV+R++HFQE++ EQLM LGV+RIL E GG +WG I+ FV + VR YEGEL+RK VM ER W+RLVGSSLEV+D+K K+ YVVTE PV H V+GV KV +FRV + TG GL+LYA D D +GW AL +AS WDQL S+ +A XXXXXXXXXXXXXXXXX XX EK P+L + XXXX P G+ G G P GG GG G G P+G G P H + XXXXXXXXX MGDPRL + P GPP+ + + L GM Q+GPP+++ GP W Q F +FG G A +QQGFRRS S G D + V + +P XXXXXXXXXXA EETK+ D GD+ A XXXXXXX P T+ T +D XXXXXXX R ++ T G T + KP S WK + GS+ A A G GK E VS ++ + RT G AG + +P PA PS S + A F + + P+ GG S A+ ++ XXXXXXXXXXXXXXXXX +DA AA Q KVF+RLC + SE E+GDAG G AA E L+F QLM WDEVQELL++G+LKE E++ +++EA R Q E G A+T D+W G+ A GS +G S +D LT KGFM LVKLIEELQFEKELEQDKGVGL+PGPV V+
Sbjct: 58 QLARMTEAARGVGEDASHIYLVRERGFKPAVAFKEAQDMGHSGYAGQLQQALVKGVVEPIGEWLRDLESIEGLVTDFNEIRVQHDHYRLKVEDLSQKARALEARATTRGDSRDAKQAAEKLKRNTKKLNEVTVEFDKKLSSCCNRMTRAWEDREKMMNGIVARIVHFQESFFAEQLMNSLGVARILSAAEGGGPRWGGTMGIEPFVPKGHVRHYEGELLRKHMVMKERMWYRLVGSSLEVYDMKPKEGRDNTPMYVVTELPVTVHEVKGVTKVSGVNFRVTVLGGGETGGGGLNLYAADEVDGKGWMDALTRASEWDQLASSSKAAGIAPGGEAGVAMA--------------------------GAXXXXXXXXXXXXXXXXXKXXXXXXEKNPELANXXXXXXXXXXXXL----LPPGLAGPGGPVGGMGGGVGIGGSFNSRTGRAGLGPSGVGMPFGNMGSHMNPPSFSGSSXXXXXXXXXXXXXXXXXXXXXXXQMGDPRLHMAAQQMGMSSNGRXXXXXXXXXXXXMPPHFDPPQMSGPPV-NPSTGLPVGMRQNGPPIVLPAGMVPRGGGXXXXXXXXXXXXXXXXXXGP----------------WGSTPQQXXXXXXXXXXXXXXXXLGTSRSFTSRFGMKQGAAGRQQGFRRSSSFG----DWLGPSGVGQPLSPTMEVDSFETQSTRSAPPFGATATVGDATAAAEXXXXXXXXXXAGGHVTGTEETKSSTKDKKGDEGADKATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXXXXXXXXAPGVVTIQTIHTKKDAPRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXIPLSDLFKRGDDGGLSRYDTSGETPARARSKPASTWKRMMSFGGAGSSYRYDAGDAGVSG----EGKSSAEEVSESDSALAAKAKNDGTQDSAALTTAEVSRRTDSGATAGSSGGSVVADTPSSAASTRATVGDPTPVI---PAVEPPSESPAGGCEYITPAYFAAFSAATTPAPAGG-------PGSGANPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASNDAVAA-QAKVFQRLCDSS---GSETETGDAGGGAAA---GAFGEESTLSFRQLMGWDEVQELLEFGALKEGELTTLWQEAARAQDAELGTGGDPRAQTTDIW---GSGSPGAANAAAAAPGSQEGGSG---GSTRDVLTVKGFMILVKLIEELQFEKELEQDKGVGLVPGPVCVV 1222
BLAST of mRNA_H-elongata_contig5254.12559.1 vs. uniprot
Match: A0A6H5KHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT2_9PHAE) HSP 1 Score: 329 bits (843), Expect = 2.530e-87 Identity = 174/324 (53.70%), Postives = 223/324 (68.83%), Query Frame = 1
Query: 1 QVARTTEAARGMGADTSHLYGVKDAGFKPVTAFKDAQEQCHSGYAGQLQHAFVQGVLNPVGDWQRDLRGLEGKVSAFTSVQVQHDHYRIKVEDLKIKAQQLEARAATRGDSRNAKAAAERLNRNSAKLQEVTKHYNEARENSCQGMNEAWRNRLVRMNNIVSRLIHFQEAYLGEQLMIMLGVSRILE--EAGGKQWGENTEIQAFVSRSDVRLYEGELIRKLRVMNERKWFRLVGSSLEVFDIKDKDDS----YYVVTETPVVTHIVRGVQKVDETSFRVNLA----TGDVGLHLYAMDAADAEGWCKALEKASVWDQLTSTQE 942
Q+AR TEAARG+G D SH+Y +++ GFKP AFK AQ+ HSGYAGQLQ A V+GV+ P+G+W RDL +EG V+ F ++VQHDHYR+KVEDL KA+ LEARA TRGDSR+AK AAE+L RN+ KL EVT +++ + C M AW +R MN IV+R++HFQE++ EQLM LGV+RIL E G +WG I+ FV + VR YEGEL+RK VM ER W+RLVGSSLE +D+K K+ YVVTE PV + V+GV K+ +FRV + TG GL+LYA D D +GW AL +AS WDQL S+ +
Sbjct: 58 QLARMTEAARGVGEDASHIYLIRERGFKPAVAFKQAQDMGHSGYAGQLQQALVKGVVEPIGEWLRDLESIEGLVTDFNEIRVQHDHYRLKVEDLSQKARALEARATTRGDSRDAKQAAEKLKRNTKKLNEVTVEFDKKLSSCCNRMTRAWDDREKMMNGIVARIVHFQESFFAEQLMNSLGVARILSAAEGSGPRWGGTMGIEPFVPKGHVRHYEGELLRKHMVMKERMWYRLVGSSLEAYDMKPKEGRDNTPMYVVTELPVAVYEVKGVTKISGVNFRVTVLGGGETGGGGLNLYAADEVDGKGWMDALTRASEWDQLASSNK 381 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5254.12559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5254.12559.1 >prot_H-elongata_contig5254.12559.1 ID=prot_H-elongata_contig5254.12559.1|Name=mRNA_H-elongata_contig5254.12559.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1130bp MGADTSHLYGVKDAGFKPVTAFKDAQEQCHSGYAGQLQHAFVQGVLNPVGback to top mRNA from alignment at H-elongata_contig5254:513..11228- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5254.12559.1 ID=mRNA_H-elongata_contig5254.12559.1|Name=mRNA_H-elongata_contig5254.12559.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=10716bp|location=Sequence derived from alignment at H-elongata_contig5254:513..11228- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5254:513..11228- >mRNA_H-elongata_contig5254.12559.1 ID=mRNA_H-elongata_contig5254.12559.1|Name=mRNA_H-elongata_contig5254.12559.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6780bp|location=Sequence derived from alignment at H-elongata_contig5254:513..11228- (Himanthalia elongata Himel1 dioecious)back to top |