mRNA_H-elongata_contig5252.12555.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5252.12555.1
Unique NamemRNA_H-elongata_contig5252.12555.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: D8LTL7_ECTSI (Heavy metal translocating P-type ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL7_ECTSI)

HSP 1 Score: 289 bits (740), Expect = 5.100e-87
Identity = 152/202 (75.25%), Postives = 172/202 (85.15%), Query Frame = 1
Query:    1 EPTVDGFQATPGMGVSCTVVHPGAGTKIDASSRGDSRPSRGDLVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
            EP V+GFQ+TPGMGVSCT+V    G+    +     + S+GDLVLVG+R+WL RH V IPPE+E  A+SLEWQGKTVVFVAGGG+ KG+LAVAD  RPEAREAV +LH MGISVW++TGDNRATAEAVAA  G+PRGKV+A VLPADK+RKVQELQ MG+AVAMVGDGVNDSPALA ADVGIAVGAGTQVAVEAADMVLVRS
Sbjct: 1027 EPAVEGFQSTPGMGVSCTIVKDRGGSASGTTGERHRKMSKGDLVLVGSRTWLSRHHVRIPPEIEGHAASLEWQGKTVVFVAGGGETKGVLAVADSVRPEAREAVGTLHRMGISVWVVTGDNRATAEAVAAIVGIPRGKVMAGVLPADKSRKVQELQRMGQAVAMVGDGVNDSPALAMADVGIAVGAGTQVAVEAADMVLVRS 1228          
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: UPI00148706A4 (copper-transporting ATPase 2 n=1 Tax=Arvicanthis niloticus TaxID=61156 RepID=UPI00148706A4)

HSP 1 Score: 172 bits (437), Expect = 4.360e-46
Identity = 100/209 (47.85%), Postives = 135/209 (64.59%), Query Frame = 1
Query:   19 FQATPGMGVSCTV-------------VHPGAGTKIDASSRGDSRPSRGDLVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
            FQA PG G+SC V              HP     +D+   G+   S+   VL+G R W+RR+G++I  ++  + +  E +G+T + VA  G   G++A+AD  +PEA  A+ +L SMG+ V +ITGDNR TA A+A   G+   KV A VLP+ K  KVQELQ+ G+ VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1105 FQAVPGCGISCKVSNVESILAHSDLTAHPAG---VDSPPTGEGTGSQAFSVLIGNREWMRRNGLTISSDISDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKPEAALAIYTLKSMGVDVALITGDNRKTARAIATQVGI--NKVFAEVLPSHKVAKVQELQNEGKKVAMVGDGVNDSPALAQADVGIAIGTGTDVAIEAADVVLIRN 1308          
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A836CEY3_9STRA (Putative copper-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY3_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.080e-45
Identity = 103/204 (50.49%), Postives = 135/204 (66.18%), Query Frame = 1
Query:    4 PTVDGFQATPGMGVSCTVVHPGAGTKIDASSRGDSRPSRGDLVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMG---ISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
            P VD F+  P  G S  +   G G  + A+  G +   +G  VLVG R+W+  + V +    E +  +LE +GKT + VA G +  G+LAVAD+ + EA   VA+L  MG   I VW++TGDN  TA ++    G+P  +++A VLPA KARKV+ELQSMG  VAMVGDG+NDSPALA ADVGIA+GAGTQVA+EAA MVLVR+
Sbjct:  862 PAVDNFEVRPAGGGSEGMDKEGGGRHV-AAGMGVACMYQGTRVLVGNRAWMAANSVKVSKVEEKTTVALEEEGKTAMLVAMGQQLIGVLAVADQVKREAASTVAALQHMGLKAIHVWMVTGDNSRTARSLGRNLGIPAERIVAEVLPAHKARKVRELQSMGEVVAMVGDGINDSPALAAADVGIAIGAGTQVAIEAAQMVLVRN 1064          
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8C3UAC7_CATUS (P-type Cu(+) transporter n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3UAC7_CATUS)

HSP 1 Score: 171 bits (434), Expect = 1.090e-45
Identity = 105/206 (50.97%), Postives = 139/206 (67.48%), Query Frame = 1
Query:   19 FQATPGMGVSCTV--VHPGAGT------KIDASSRGDSRPSRGDL--VLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
            FQA PG G+SC V  V    GT      K+DA+  GDS PS      VL+G R W+RR+G++I  ++  + ++ E +G+T + VA  G   G++A+AD  + EA  AV +L SMGI V ++TGDNR TA+A+A   G+   KV A VLP+ K  KVQELQ+  + VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1003 FQAVPGCGISCKVEGVEAILGTAEEGPNKLDANRSGDSSPSASQKYSVLIGNREWMRRNGLNITNDVNDAMTNHEMKGQTAILVAIDGVLCGMIAIADTVKQEAALAVHTLQSMGIDVVLLTGDNRKTAKAIATQVGIR--KVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRN 1206          
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8C3Y0T2_CATUS (P-type Cu(+) transporter n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3Y0T2_CATUS)

HSP 1 Score: 171 bits (434), Expect = 1.100e-45
Identity = 105/206 (50.97%), Postives = 139/206 (67.48%), Query Frame = 1
Query:   19 FQATPGMGVSCTV--VHPGAGT------KIDASSRGDSRPSRGDL--VLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
            FQA PG G+SC V  V    GT      K+DA+  GDS PS      VL+G R W+RR+G++I  ++  + ++ E +G+T + VA  G   G++A+AD  + EA  AV +L SMGI V ++TGDNR TA+A+A   G+   KV A VLP+ K  KVQELQ+  + VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1081 FQAVPGCGISCKVEGVEAILGTAEEGPNKLDANRSGDSSPSASQKYSVLIGNREWMRRNGLNITNDVNDAMTNHEMKGQTAILVAIDGVLCGMIAIADTVKQEAALAVHTLQSMGIDVVLLTGDNRKTAKAIATQVGIR--KVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRN 1284          
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8C3U9K2_CATUS (P-type Cu(+) transporter n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3U9K2_CATUS)

HSP 1 Score: 171 bits (434), Expect = 1.100e-45
Identity = 105/206 (50.97%), Postives = 139/206 (67.48%), Query Frame = 1
Query:   19 FQATPGMGVSCTV--VHPGAGT------KIDASSRGDSRPSRGDL--VLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
            FQA PG G+SC V  V    GT      K+DA+  GDS PS      VL+G R W+RR+G++I  ++  + ++ E +G+T + VA  G   G++A+AD  + EA  AV +L SMGI V ++TGDNR TA+A+A   G+   KV A VLP+ K  KVQELQ+  + VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1091 FQAVPGCGISCKVEGVEAILGTAEEGPNKLDANRSGDSSPSASQKYSVLIGNREWMRRNGLNITNDVNDAMTNHEMKGQTAILVAIDGVLCGMIAIADTVKQEAALAVHTLQSMGIDVVLLTGDNRKTAKAIATQVGIR--KVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRN 1294          
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8D0AVE0_SANLU (P-type Cu(+) transporter n=2 Tax=Eupercaria TaxID=1489922 RepID=A0A8D0AVE0_SANLU)

HSP 1 Score: 171 bits (432), Expect = 1.990e-45
Identity = 111/219 (50.68%), Postives = 140/219 (63.93%), Query Frame = 1
Query:   19 FQATPGMGVSCTVVH---------------PGAGTKIDASSRGDSRPSRGD--------LVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
            FQA PG G+SC V +               PGA T  D SS   SRP   D         VL+G R W+RR+G  I  +++++ SS E +G+T + VA  G    +LA+AD  +PE+  AV +L+SMGI V +ITGDNR TA+A+AA  G+   KV A VLP+ K  KVQELQ  GR VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct:  910 FQAVPGCGISCRVSNVEHLLQQQSEERFLLPGATT--DESSLLSSRPVISDDYSVPMSYSVLIGNREWMRRNGHHIGADVDAAMSSHETKGQTAILVAIEGVLCAMLAIADTVKPESALAVFTLNSMGIEVVMITGDNRRTAKAIAAQVGIR--KVFAEVLPSHKVAKVQELQEQGRRVAMVGDGVNDSPALAQADVGIAIGTGTDVAIEAADIVLIRN 1124          
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8C3Y1M8_CATUS (P-type Cu(+) transporter n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3Y1M8_CATUS)

HSP 1 Score: 171 bits (432), Expect = 2.040e-45
Identity = 105/208 (50.48%), Postives = 140/208 (67.31%), Query Frame = 1
Query:   19 FQATPGMGVSCTV--VHPGAGT------KIDASSRGDSRPSRGD----LVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
            FQA PG G+SC V  V    GT      K+DA+  GDS  + GD     VL+G R W+RR+G++I  ++  + ++ E +G+T + VA  G   G++A+AD  + EA  AV +L SMGI V ++TGDNR TA+A+A   G+   KV A VLP+ K  KVQELQ+  + VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1072 FQAVPGCGISCKVEGVEAILGTAEEGPNKLDANRSGDSSAALGDNAKYSVLIGNREWMRRNGLNITNDVNDAMTNHEMKGQTAILVAIDGVLCGMIAIADTVKQEAALAVHTLQSMGIDVVLLTGDNRKTAKAIATQVGIR--KVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRN 1277          
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8C3MIC5_GEOPR (P-type Cu(+) transporter n=1 Tax=Geospiza parvula TaxID=87175 RepID=A0A8C3MIC5_GEOPR)

HSP 1 Score: 170 bits (430), Expect = 3.780e-45
Identity = 105/208 (50.48%), Postives = 138/208 (66.35%), Query Frame = 1
Query:   19 FQATPGMGVSCTV--VHPGAGT------KIDASSRGDSRPSRGD----LVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
            FQA PG G+SC V  V    GT      K+DA+  GDS    GD     VL+G R W+RR+G++I  ++  + ++ E +G+T +  A  G   G++A+AD  + EA  AV +L SMGI V +ITGDNR TA+A+A   G+   KV A VLP+ K  KVQELQ+  + VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1047 FQAVPGCGISCKVGGVEAILGTAEEAPNKLDANRTGDSSAPLGDNGKYSVLIGNREWMRRNGLNIANDVNDAMTNHEMKGQTAILAAIDGALCGMIAIADTVKQEAALAVHTLQSMGIDVVLITGDNRKTAKAIATQVGIK--KVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALAKADVGIAIGTGTDVAIEAADVVLIRN 1252          
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Match: A0A8C3MKR1_GEOPR (P-type Cu(+) transporter n=1 Tax=Geospiza parvula TaxID=87175 RepID=A0A8C3MKR1_GEOPR)

HSP 1 Score: 170 bits (430), Expect = 3.780e-45
Identity = 105/208 (50.48%), Postives = 138/208 (66.35%), Query Frame = 1
Query:   19 FQATPGMGVSCTV--VHPGAGT------KIDASSRGDSRPSRGD----LVLVGTRSWLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEAREAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKARKVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLVRS 606
            FQA PG G+SC V  V    GT      K+DA+  GDS    GD     VL+G R W+RR+G++I  ++  + ++ E +G+T +  A  G   G++A+AD  + EA  AV +L SMGI V +ITGDNR TA+A+A   G+   KV A VLP+ K  KVQELQ+  + VAMVGDGVNDSPALA ADVGIA+G GT VA+EAAD+VL+R+
Sbjct: 1068 FQAVPGCGISCKVGGVEAILGTAEEAPNKLDANRTGDSSAPLGDNGKYSVLIGNREWMRRNGLNIANDVNDAMTNHEMKGQTAILAAIDGALCGMIAIADTVKQEAALAVHTLQSMGIDVVLITGDNRKTAKAIATQVGIK--KVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALAKADVGIAIGTGTDVAIEAADVVLIRN 1273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5252.12555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTL7_ECTSI5.100e-8775.25Heavy metal translocating P-type ATPase n=2 Tax=Ec... [more]
UPI00148706A44.360e-4647.85copper-transporting ATPase 2 n=1 Tax=Arvicanthis n... [more]
A0A836CEY3_9STRA1.080e-4550.49Putative copper-transporting ATPase n=1 Tax=Tribon... [more]
A0A8C3UAC7_CATUS1.090e-4550.97P-type Cu(+) transporter n=1 Tax=Catharus ustulatu... [more]
A0A8C3Y0T2_CATUS1.100e-4550.97P-type Cu(+) transporter n=1 Tax=Catharus ustulatu... [more]
A0A8C3U9K2_CATUS1.100e-4550.97P-type Cu(+) transporter n=1 Tax=Catharus ustulatu... [more]
A0A8D0AVE0_SANLU1.990e-4550.68P-type Cu(+) transporter n=2 Tax=Eupercaria TaxID=... [more]
A0A8C3Y1M8_CATUS2.040e-4550.48P-type Cu(+) transporter n=1 Tax=Catharus ustulatu... [more]
A0A8C3MIC5_GEOPR3.780e-4550.48P-type Cu(+) transporter n=1 Tax=Geospiza parvula ... [more]
A0A8C3MKR1_GEOPR3.780e-4550.48P-type Cu(+) transporter n=1 Tax=Geospiza parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5252contigH-elongata_contig5252:181..2735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.4
Seed ortholog evalue1.7e-76
Seed eggNOG ortholog2880.D8LTL7
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
EggNOG free text desc.cation-transporting ATPase activity
EggNOG OGsCOG2217@1,KOG0207@2759
EC3.6.3.54
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons5
Model size628
Cds size627
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5252.12555.1prot_H-elongata_contig5252.12555.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5252 181..2735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930857.8154192-CDS-H-elongata_contig5252:180..2591622930857.8154192-CDS-H-elongata_contig5252:180..259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5252 181..259 +
1691679600.113564-CDS-H-elongata_contig5252:180..2591691679600.113564-CDS-H-elongata_contig5252:180..259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5252 181..259 +
1622930857.8418844-CDS-H-elongata_contig5252:516..7631622930857.8418844-CDS-H-elongata_contig5252:516..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5252 517..763 +
1691679600.129899-CDS-H-elongata_contig5252:516..7631691679600.129899-CDS-H-elongata_contig5252:516..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5252 517..763 +
1622930857.864164-CDS-H-elongata_contig5252:1462..15891622930857.864164-CDS-H-elongata_contig5252:1462..1589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5252 1463..1589 +
1691679600.1412413-CDS-H-elongata_contig5252:1462..15891691679600.1412413-CDS-H-elongata_contig5252:1462..1589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5252 1463..1589 +
1622930857.8773396-CDS-H-elongata_contig5252:2141..22551622930857.8773396-CDS-H-elongata_contig5252:2141..2255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5252 2142..2255 +
1691679600.1543624-CDS-H-elongata_contig5252:2141..22551691679600.1543624-CDS-H-elongata_contig5252:2141..2255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5252 2142..2255 +
1622930857.888662-CDS-H-elongata_contig5252:2675..27351622930857.888662-CDS-H-elongata_contig5252:2675..2735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5252 2676..2735 +
1691679600.172051-CDS-H-elongata_contig5252:2675..27351691679600.172051-CDS-H-elongata_contig5252:2675..2735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5252 2676..2735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5252.12555.1

>prot_H-elongata_contig5252.12555.1 ID=prot_H-elongata_contig5252.12555.1|Name=mRNA_H-elongata_contig5252.12555.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp
EPTVDGFQATPGMGVSCTVVHPGAGTKIDASSRGDSRPSRGDLVLVGTRS
WLRRHGVSIPPELESSASSLEWQGKTVVFVAGGGKAKGLLAVADRARPEA
REAVASLHSMGISVWIITGDNRATAEAVAATAGVPRGKVLANVLPADKAR
KVQELQSMGRAVAMVGDGVNDSPALATADVGIAVGAGTQVAVEAADMVLV
RSXXXXTP*
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mRNA from alignment at H-elongata_contig5252:181..2735+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5252.12555.1 ID=mRNA_H-elongata_contig5252.12555.1|Name=mRNA_H-elongata_contig5252.12555.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2555bp|location=Sequence derived from alignment at H-elongata_contig5252:181..2735+ (Himanthalia elongata Himel1 dioecious)
GAGCCAACGGTGGACGGCTTCCAGGCGACTCCAGGAATGGGCGTGTCGTG CACCGTGGTTCATCCCGGCGCCGGAACGAGTGAGATGGGGTGCCCCGTAG GCCGAGGCGCTCCTCCAGATCCAAATCACTTCCCCACCTCTCCCCGTCTT CCTCTCTTGATCTTATACTATATACTATATACTATTATAAATACTATTAT AAAATACTTTACACTTAGGTCAATCCAGCCGTAGCAAGCCTTCTTCCCTA TTAATTTCTTGGAATTTATTAACCGACCTCCCATGTTTTTTTCTTCTTCT TCTGTTTTTAATATAATTGGCTCACCCGCGGTTCAGAAATCGATGCCTCT AGCAGGGGCGATTCTCGTCCATCCCGCGGAGACCTCGTGCTCGTGGGAAC GAGATCCTGGCTGCGGCGCCACGGGGTGAGTATTCCCCCCGAGCTCGAAA GCAGTGCGAGCTCTCTGGAGTGGCAGGGCAAGACAGTCGTGTTCGTGGCG GGAGGCGGCAAGGCGAAGGGCCTGTTGGCGGTGGCTGACCGGGCGAGGCC GGAAGCGCGGGAAGCGGTGGCCTCGTTGCACAGGTGATTCCTTCATTGAT TCATTGATTCGTTTATTTATGGTTGGTTAATCGATCGATTGATTTAAGTG ATCTCGTATATAAAATATTGTGCGCGCATGCGTCTCTGAGTGAGTTGAGT TGAGTGTGCAGAGCGGTGGATGTGATTTGTAGCGAATGCTGGCTAGAGAT GGCGACGACCCTCCGTGCGTACCCCCTGACTTGTTACACCAGACACATAC TAAAGCAGAGTAATGTATCGTTCCCCGAGACTGGTAGTTACTGGTTCCTA ATTCCATACCCAACGTGATGTTCGTACGTTCTTATTAATACTTAAAAGAA TTGTCCAAGTGGTGCATGCCTTGGTTGTAAGGCCATTGACCACGCCTTCT GAGGTAGAGAGAACATCGGGGATCAGATAGGGGGAGGAGGGGCTTAAGAC ATGGACTTGTTGTTGTTGTTGTAGTTGTTGTTAGATTATACCGAGTGTCG TCGTCGCGATGCTTTTCCGGACGAGCTGAGCTCTGTGGGTGTTCGATATA TCCCGCCAACAAGCACCAAAATCAGCACTGTAGGTTCCTTATGCTGTTGC TAGGTGATGGGTTTTCCTCATTCCGGAGCGCTCTCTCGCTCGCTTCTTTC GGCGACGTAATCGACCCCTCTGCCCATGGCCCTCTGCCGTCTGTGGTCGG TGCATGATGATCGACCGACCGATCGACCCCAGTATGGGAATCAGCGTTTG GATCATCACGGGAGACAACAGAGCTACCGCCGAGGCTGTCGCTGCTACCG CGGGCGTACCCAGGGGGAAGGTGTTGGCCAACGTGCTCCCGGCTGACAAA GCGAGAAAGGTATCTTACTCACTATTAGACTTAAAGAATCCCCATGGGTT TGCAAAAACATTGGCGTTATTTTGGCTTTCTTCCCACGCTCAATTTGGAG TCGTTTTAACGACTGATTGGTGTTTCCGTTTGAAATTCGTCAGATTTTGA GGGAAAGGAAAGGCGTTGTTCAAGCTTATTGACTTTTGAATCTCCCCCCT TTCCCCAAAGACGGACAAATATAATGTATAGTTAGTTATTATGGTTTTGA CGGGGAGGGGGCCCGCCAAGGCCGAAATCCTCGATTTTGAAAAACATAAT GTAGACTATGCTACTATATACTGTATTTACTATATAAGGTGCTGTACTTT TTTTTTTGCTCTCGGCAATAAGTGGTTATTAATAGAATCGGCCCTAGGAA GGGCGGCTCTTTCACGGTCAGCACGCAAATAGCTCTGCTGTGACATGATT CTGCCGTGGACCGAGAAATAACACTTACCACGGACTGGTGATTGTAAATC TCTGAAACGACTCTGCTCTGCTATGGTCTGCTGTGGTCTGTTGTGATGTG CTTTGCTCTAGGTGCAAGAGTTGCAGAGCATGGGAAGGGCGGTAGCAATG GTGGGGGATGGGGTGAACGACTCCCCGGCCTTGGCGACTGCAGACGTCGG GATCGCCGTGGGCGCCGGTACTCAGGTGTGTTGTGCCTTTACAAATCTAC CATCATGATATCCATACATTCTAAAAAAAATGCTGTGTCCGTCGGTAGGC CGTGGCTGTAATTTAGCCACACGATCAGCTTTTCGGGTAACGAGAGGCCT ATCGCGAGAGAAGACACTGTCCACGCGTGATGTCGCCATGTCGCCATGTC TGGATATCCTGGTGTGTTTTGATTGGATCCTTGGGCGTTTCTGTATGTAT GTGTCTATCAACTTCCACACCCTCTGGTGTACTCTGATGTCCCCCCCCTC TACCAACGCTGCCTGCGAGACACGCCTCGGGGTTTTGCGATGTGATGTGA TGGCATCGACATATTTGTTCTGTTCGCCCTTGGTTTGATGCCGCGTCTGT GCGAGGGCGATGAATGATGGATGACAACCGTTGTGTTCGCGGCAGGTGGC GGTGGAGGCGGCAGATATGGTCCTGGTGCGGTCCNNNNNNNNNNTTACAC CTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig5252:181..2735+

>mRNA_H-elongata_contig5252.12555.1 ID=mRNA_H-elongata_contig5252.12555.1|Name=mRNA_H-elongata_contig5252.12555.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig5252:181..2735+ (Himanthalia elongata Himel1 dioecious)
GAGCCAACGGTGGACGGCTTCCAGGCGACTCCAGGAATGGGCGTGTCGTG
CACCGTGGTTCATCCCGGCGCCGGAACGAGAGCCAACGGTGGACGGCTTC
CAGGCGACTCCAGGAATGGGCGTGTCGTGCACCGTGGTTCATCCCGGCGC
CGGAACGAAAATCGATGCCTCTAGCAGGGGCGATTCTCGTCCATCCCGCG
GAGACCTCGTGCTCGTGGGAACGAGATCCTGGCTGCGGCGCCACGGGGTG
AGTATTCCCCCCGAGCTCGAAAGCAGTGCGAGCTCTCTGGAGTGGCAGGG
CAAGACAGTCGTGTTCGTGGCGGGAGGCGGCAAGGCGAAGGGCCTGTTGG
CGGTGGCTGACCGGGCGAGGCCGGAAGCGCGGGAAGCGGTGGCCTCGTTG
CACAGAAATCGATGCCTCTAGCAGGGGCGATTCTCGTCCATCCCGCGGAG
ACCTCGTGCTCGTGGGAACGAGATCCTGGCTGCGGCGCCACGGGGTGAGT
ATTCCCCCCGAGCTCGAAAGCAGTGCGAGCTCTCTGGAGTGGCAGGGCAA
GACAGTCGTGTTCGTGGCGGGAGGCGGCAAGGCGAAGGGCCTGTTGGCGG
TGGCTGACCGGGCGAGGCCGGAAGCGCGGGAAGCGGTGGCCTCGTTGCAC
AGTATGGGAATCAGCGTTTGGATCATCACGGGAGACAACAGAGCTACCGC
CGAGGCTGTCGCTGCTACCGCGGGCGTACCCAGGGGGAAGGTGTTGGCCA
ACGTGCTCCCGGCTGACAAAGCGAGAAAGTATGGGAATCAGCGTTTGGAT
CATCACGGGAGACAACAGAGCTACCGCCGAGGCTGTCGCTGCTACCGCGG
GCGTACCCAGGGGGAAGGTGTTGGCCAACGTGCTCCCGGCTGACAAAGCG
AGAAAGGTGCAAGAGTTGCAGAGCATGGGAAGGGCGGTAGCAATGGTGGG
GGATGGGGTGAACGACTCCCCGGCCTTGGCGACTGCAGACGTCGGGATCG
CCGTGGGCGCCGGTACTCAGGTGCAAGAGTTGCAGAGCATGGGAAGGGCG
GTAGCAATGGTGGGGGATGGGGTGAACGACTCCCCGGCCTTGGCGACTGC
AGACGTCGGGATCGCCGTGGGCGCCGGTACTCAGGTGGCGGTGGAGGCGG
CAGATATGGTCCTGGTGCGGTCCNNNNNNNNNNTTACACCTTAGGTGGCG
GTGGAGGCGGCAGATATGGTCCTGGTGCGGTCCNNNNNNNNNNTTACACC
TTAG
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