mRNA_H-elongata_contig52481.12553.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52481.12553.1
Unique NamemRNA_H-elongata_contig52481.12553.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52481.12553.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 246 bits (629), Expect = 2.460e-82
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFENTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFE+TNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_H-elongata_contig52481.12553.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 245 bits (626), Expect = 8.620e-82
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFENTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFE+TNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_H-elongata_contig52481.12553.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 245 bits (625), Expect = 1.000e-81
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFENTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFE+TNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig52481.12553.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.130e-81
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFENTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFE+TNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_H-elongata_contig52481.12553.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 246 bits (629), Expect = 2.850e-81
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFENTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFE+TNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_H-elongata_contig52481.12553.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 5.800e-81
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFENTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFE+TNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig52481.12553.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 243 bits (619), Expect = 8.230e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFENTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFE+TNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_H-elongata_contig52481.12553.1 vs. uniprot
Match: A0A6J0UZS0_9SAUR (Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A6J0UZS0_9SAUR)

HSP 1 Score: 242 bits (618), Expect = 1.170e-80
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFENTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQ SAV+ALQEA+EAYLVGLFE+TNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_H-elongata_contig52481.12553.1 vs. uniprot
Match: E1ZFV1_CHLVA (Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1ZFV1_CHLVA)

HSP 1 Score: 242 bits (617), Expect = 1.660e-80
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFENTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFE+TNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_H-elongata_contig52481.12553.1 vs. uniprot
Match: A0A183C227_GLOPA (Histone H3 n=2 Tax=Tylenchoidea TaxID=33284 RepID=A0A183C227_GLOPA)

HSP 1 Score: 242 bits (617), Expect = 1.660e-80
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFENTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEA+EAYLVGLFE+TNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERT 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52481.12553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA2.460e-8298.53Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A6V1P6C6_HETAK8.620e-8297.79Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A1Z5K8H0_FISSO1.000e-8197.79Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA1.130e-8197.79Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC2.850e-8198.53Histone domain-containing protein n=8 Tax=Bacillar... [more]
D7G4I9_ECTSI5.800e-8197.79Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A7RJG4_NEMVE8.230e-8196.32Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]
A0A6J0UZS0_9SAUR1.170e-8096.32Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
E1ZFV1_CHLVA1.660e-8096.32Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1Z... [more]
A0A183C227_GLOPA1.660e-8096.32Histone H3 n=2 Tax=Tylenchoidea TaxID=33284 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52481contigH-elongata_contig52481:1088..1498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.0
Seed ortholog evalue2e-65
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930857.502704-CDS-H-elongata_contig52481:1087..14981622930857.502704-CDS-H-elongata_contig52481:1087..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52481 1088..1498 +
1691679600.0431108-CDS-H-elongata_contig52481:1087..14981691679600.0431108-CDS-H-elongata_contig52481:1087..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52481 1088..1498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52481.12553.1prot_H-elongata_contig52481.12553.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52481 1088..1498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52481.12553.1

>prot_H-elongata_contig52481.12553.1 ID=prot_H-elongata_contig52481.12553.1|Name=mRNA_H-elongata_contig52481.12553.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFENTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at H-elongata_contig52481:1088..1498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52481.12553.1 ID=mRNA_H-elongata_contig52481.12553.1|Name=mRNA_H-elongata_contig52481.12553.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig52481:1088..1498+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGCACAAAGCAGACAGCTCGTAAGTCTACCGGAGGCAAGGCCCC
GCGGAAGCAGCTGGCAACCAAGGCAGCGCGCAAGTCTGCCCCCGCCACAG
GTGGTGTGAAGAAGCCACACCGCTACAGGCCGGGCACCGTGGCCTTGCGT
GAAATCCGCCGTTATCAGAAGTCAACTGAGCTCCTAATTCGTAAGCTGCC
CTTCCAGCGTCTGGTGCGCGAAATCGCCCAGGACTTCAAGAGTGACCTGC
GTTTCCAGGGCTCCGCCGTGTTAGCCCTGCAGGAGGCCGCCGAGGCCTAC
CTTGTTGGTCTGTTTGAAAACACCAACCTATGCGCCATCCACGCCAAGCG
AGTAACCATCATGCCCAAGGACATACAGCTGGCCAGGCGCATCCGTGGAG
AGCGCTCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig52481:1088..1498+

>mRNA_H-elongata_contig52481.12553.1 ID=mRNA_H-elongata_contig52481.12553.1|Name=mRNA_H-elongata_contig52481.12553.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig52481:1088..1498+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGCACAAAGCAGACAGCTCGTAAGTCTACCGGAGGCAAGGCCCC
GCGGAAGCAGCTGGCAACCAAGGCAGCGCGCAAGTCTGCCCCCGCCACAG
GTGGTGTGAAGAAGCCACACCGCTACAGGCCGGGCACCGTGGCCTTGCGT
GAAATCCGCCGTTATCAGAAGTCAACTGAGCTCCTAATTCGTAAGCTGCC
CTTCCAGCGTCTGGTGCGCGAAATCGCCCAGGACTTCAAGAGTGACCTGC
GTTTCCAGGGCTCCGCCGTGTTAGCCCTGCAGGAGGCCGCCGAGGCCTAC
CTTGTTGGTCTGTTTGAAAACACCAACCTATGCGCCATCCACGCCAAGCG
AGTAACCATCATGCCCAAGGACATACAGCTGGCCAGGCGCATCCGTGGAG
AGCGCTCGTAGATGGCTCGCACAAAGCAGACAGCTCGTAAGTCTACCGGA
GGCAAGGCCCCGCGGAAGCAGCTGGCAACCAAGGCAGCGCGCAAGTCTGC
CCCCGCCACAGGTGGTGTGAAGAAGCCACACCGCTACAGGCCGGGCACCG
TGGCCTTGCGTGAAATCCGCCGTTATCAGAAGTCAACTGAGCTCCTAATT
CGTAAGCTGCCCTTCCAGCGTCTGGTGCGCGAAATCGCCCAGGACTTCAA
GAGTGACCTGCGTTTCCAGGGCTCCGCCGTGTTAGCCCTGCAGGAGGCCG
CCGAGGCCTACCTTGTTGGTCTGTTTGAAAACACCAACCTATGCGCCATC
CACGCCAAGCGAGTAACCATCATGCCCAAGGACATACAGCTGGCCAGGCG
CATCCGTGGAGAGCGCTCGTAG
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