mRNA_H-elongata_contig5248.12551.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5248.12551.1
Unique NamemRNA_H-elongata_contig5248.12551.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5248.12551.1 vs. uniprot
Match: A0A6H5L2D0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.230e-9
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   97 EFLYLGGNVNHNDILSIEVNQRIRNAWCSFRKCTLELYDRPSVPLELKLRMLKTEVFETIL 279
            EF YLG  V  +  LS ++NQR R AW   RK   EL+DRP+ P  LK+R+LK E  E +L
Sbjct:  245 EFRYLGRRVREDIELSQDINQRSRAAWACLRKYARELFDRPTAPWGLKIRLLKAEAMEALL 305
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BLAST of mRNA_H-elongata_contig5248.12551.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.910e-8
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:   88 QTNEFLYLGGNVNHNDILSIEVNQRIRNAWCSFRKCTLELYDRPSVPLELKLRMLKTEVFETILCGCATWS 300
            QT+ F+YL   ++ +     E+  R   AW  +R+ +  +YDR     +LK+R+L++EV ET+L GCA+WS
Sbjct:   24 QTDRFVYLERIISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQSEVVETLLYGCASWS 94
[Close]
BLAST of mRNA_H-elongata_contig5248.12551.1 vs. uniprot
Match: A0A6H5L6J0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 8.060e-8
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   82 GNQTNEFLYLGGNVNHNDILSIEVNQRIRNAWCSFRKCTLELYDRPSVPLELKLRMLKTEVFETILCGCATWS 300
            G  T+ F+YLG  ++ +     E+  R   AW  +R+ +  +YDR     +LK+R+++TEV ET+L  CA+WS
Sbjct:  353 GLMTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASIYDRLRANRQLKIRLVQTEVVETLLYWCASWS 425
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5248.12551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L2D0_9PHAE5.230e-949.18Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCQ1_9PHAE5.910e-838.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6J0_9PHAE8.060e-836.99Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5248contigH-elongata_contig5248:46..351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930857.3787804-CDS-H-elongata_contig5248:45..3511622930857.3787804-CDS-H-elongata_contig5248:45..351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5248 46..351 -
1691679600.010532-CDS-H-elongata_contig5248:45..3511691679600.010532-CDS-H-elongata_contig5248:45..351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5248 46..351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5248.12551.1prot_H-elongata_contig5248.12551.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5248 46..351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5248.12551.1

>prot_H-elongata_contig5248.12551.1 ID=prot_H-elongata_contig5248.12551.1|Name=mRNA_H-elongata_contig5248.12551.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
RFSAACHNILLRHGPARPQQYCRGSHLGNQTNEFLYLGGNVNHNDILSIE
VNQRIRNAWCSFRKCTLELYDRPSVPLELKLRMLKTEVFETILCGCATWS
PR
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mRNA from alignment at H-elongata_contig5248:46..351-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5248.12551.1 ID=mRNA_H-elongata_contig5248.12551.1|Name=mRNA_H-elongata_contig5248.12551.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig5248:46..351- (Himanthalia elongata Himel1 dioecious)
AGGTTCAGCGCAGCCTGCCATAACATTTTATTACGTCATGGCCCAGCCCG
GCCACAACAATACTGTCGGGGATCCCATTTGGGTAACCAAACGAACGAGT
TTTTATACCTCGGGGGGAACGTCAACCACAACGACATCCTGTCCATTGAG
GTCAATCAGCGCATACGTAACGCATGGTGCAGCTTCCGGAAGTGCACCCT
CGAACTATACGACCGACCCAGCGTCCCCCTGGAACTCAAACTCCGGATGC
TGAAAACCGAGGTATTCGAGACAATACTGTGCGGCTGCGCCACGTGGAGC
CCGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig5248:46..351-

>mRNA_H-elongata_contig5248.12551.1 ID=mRNA_H-elongata_contig5248.12551.1|Name=mRNA_H-elongata_contig5248.12551.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig5248:46..351- (Himanthalia elongata Himel1 dioecious)
AGGTTCAGCGCAGCCTGCCATAACATTTTATTACGTCATGGCCCAGCCCG
GCCACAACAATACTGTCGGGGATCCCATTTGGGTAACCAAACGAACGAGT
TTTTATACCTCGGGGGGAACGTCAACCACAACGACATCCTGTCCATTGAG
GTCAATCAGCGCATACGTAACGCATGGTGCAGCTTCCGGAAGTGCACCCT
CGAACTATACGACCGACCCAGCGTCCCCCTGGAACTCAAACTCCGGATGC
TGAAAACCGAGGTATTCGAGACAATACTGTGCGGCTGCGCCACGTGGAGC
CCGCGCAGGTTCAGCGCAGCCTGCCATAACATTTTATTACGTCATGGCCC
AGCCCGGCCACAACAATACTGTCGGGGATCCCATTTGGGTAACCAAACGA
ACGAGTTTTTATACCTCGGGGGGAACGTCAACCACAACGACATCCTGTCC
ATTGAGGTCAATCAGCGCATACGTAACGCATGGTGCAGCTTCCGGAAGTG
CACCCTCGAACTATACGACCGACCCAGCGTCCCCCTGGAACTCAAACTCC
GGATGCTGAAAACCGAGGTATTCGAGACAATACTGTGCGGCTGCGCCACG
TGGAGCCCGCGC
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