mRNA_H-elongata_contig52387.12546.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52387.12546.1
Unique NamemRNA_H-elongata_contig52387.12546.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52387.12546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52387contigH-elongata_contig52387:2622..3431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size810
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52387.12546.1prot_H-elongata_contig52387.12546.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52387 3003..3419 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930856.825987-UTR-H-elongata_contig52387:2621..30021622930856.825987-UTR-H-elongata_contig52387:2621..3002Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52387 2622..3002 +
1691679599.8204012-UTR-H-elongata_contig52387:2621..30021691679599.8204012-UTR-H-elongata_contig52387:2621..3002Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52387 2622..3002 +
1622930856.873968-UTR-H-elongata_contig52387:3419..34311622930856.873968-UTR-H-elongata_contig52387:3419..3431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52387 3420..3431 +
1691679599.8384924-UTR-H-elongata_contig52387:3419..34311691679599.8384924-UTR-H-elongata_contig52387:3419..3431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52387 3420..3431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930856.8474197-CDS-H-elongata_contig52387:3002..34191622930856.8474197-CDS-H-elongata_contig52387:3002..3419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52387 3003..3419 +
1691679599.8289318-CDS-H-elongata_contig52387:3002..34191691679599.8289318-CDS-H-elongata_contig52387:3002..3419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52387 3003..3419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52387.12546.1

>prot_H-elongata_contig52387.12546.1 ID=prot_H-elongata_contig52387.12546.1|Name=mRNA_H-elongata_contig52387.12546.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MATTQAKYKLAYLESVVLRYVQSRSTRVSHCFQGQPRSNPGRAKRALFSR
SAHPVAGQADPRFARMRSYLGGNCSSSAQRYRSTPTFSIYFQLMAHHERT
LSPRVLRGDTRSKEFHTGAAICFSFRFSRFLSCPQNFL*
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mRNA from alignment at H-elongata_contig52387:2622..3431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52387.12546.1 ID=mRNA_H-elongata_contig52387.12546.1|Name=mRNA_H-elongata_contig52387.12546.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=810bp|location=Sequence derived from alignment at H-elongata_contig52387:2622..3431+ (Himanthalia elongata Himel1 dioecious)
AAATCAAGATTACTCACCACGTGTCTACCTTCCGGCTTTCCGCAGAGGGT
GTTTTTTTTTAATTAATTTCCATCAGACGCAAACCGGCATGACAGGTAAG
AGGGCGCCACACCGGTTTTCAAATACCACCCTCCCCTTATAGGCCGCTAT
CCCTGAAGACGTTAGATTTGACTATACTACTCGCGTTGCTTACGCAACCA
CGTCGGACCTCCGCTGCAACCCTCTATCCTGTCCCCGCTGTGCGCTGTCC
CATTTCTGGGCGTATGCAAGAAAATATTAAAATCAGAGGGGTTTGTAGCA
AAAAATTATTTAACTAACTGTTCTTACCCCCTGATTTATGCACACGCAGT
AGTACAGTAGCAGTACAGTAGTAGTACTGGGATGGCCACGACACAGGCAA
AATACAAACTAGCCTACCTAGAGTCAGTCGTACTTAGATACGTTCAGTCA
CGTTCCACGAGAGTGAGCCATTGTTTTCAAGGGCAACCGAGATCGAACCC
AGGCAGGGCAAAACGTGCCCTGTTTTCCCGTTCAGCTCACCCGGTCGCTG
GACAAGCCGACCCAAGGTTCGCACGAATGCGCTCCTACTTAGGAGGCAAC
TGCTCAAGTTCTGCGCAACGGTATCGATCCACACCTACCTTCTCCATCTA
CTTTCAATTAATGGCACACCACGAACGAACTCTTTCTCCGCGAGTGCTAC
GTGGTGACACTCGTTCTAAAGAATTCCATACCGGCGCCGCCATCTGCTTT
TCCTTCAGGTTCAGTCGTTTCCTCTCGTGTCCTCAGAATTTCCTCTGACT
CGGTGGGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig52387:2622..3431+

>mRNA_H-elongata_contig52387.12546.1 ID=mRNA_H-elongata_contig52387.12546.1|Name=mRNA_H-elongata_contig52387.12546.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig52387:2622..3431+ (Himanthalia elongata Himel1 dioecious)
ATGGCCACGACACAGGCAAAATACAAACTAGCCTACCTAGAGTCAGTCGT
ACTTAGATACGTTCAGTCACGTTCCACGAGAGTGAGCCATTGTTTTCAAG
GGCAACCGAGATCGAACCCAGGCAGGGCAAAACGTGCCCTGTTTTCCCGT
TCAGCTCACCCGGTCGCTGGACAAGCCGACCCAAGGTTCGCACGAATGCG
CTCCTACTTAGGAGGCAACTGCTCAAGTTCTGCGCAACGGTATCGATCCA
CACCTACCTTCTCCATCTACTTTCAATTAATGGCACACCACGAACGAACT
CTTTCTCCGCGAGTGCTACGTGGTGACACTCGTTCTAAAGAATTCCATAC
CGGCGCCGCCATCTGCTTTTCCTTCAGGTTCAGTCGTTTCCTCTCGTGTC
CTCAGAATTTCCTCTGAATGGCCACGACACAGGCAAAATACAAACTAGCC
TACCTAGAGTCAGTCGTACTTAGATACGTTCAGTCACGTTCCACGAGAGT
GAGCCATTGTTTTCAAGGGCAACCGAGATCGAACCCAGGCAGGGCAAAAC
GTGCCCTGTTTTCCCGTTCAGCTCACCCGGTCGCTGGACAAGCCGACCCA
AGGTTCGCACGAATGCGCTCCTACTTAGGAGGCAACTGCTCAAGTTCTGC
GCAACGGTATCGATCCACACCTACCTTCTCCATCTACTTTCAATTAATGG
CACACCACGAACGAACTCTTTCTCCGCGAGTGCTACGTGGTGACACTCGT
TCTAAAGAATTCCATACCGGCGCCGCCATCTGCTTTTCCTTCAGGTTCAG
TCGTTTCCTCTCGTGTCCTCAGAATTTCCTCTGA
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