mRNA_H-elongata_contig52377.12543.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52377.12543.1
Unique NamemRNA_H-elongata_contig52377.12543.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.170e-41
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 1 
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 237
            P   +DDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE+VSAKYDGTLRNQNNQV
Sbjct:  819 PHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQV 897
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BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.170e-41
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 1 
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 237
            P   +DDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE+VSAKYDGTLRNQNNQV
Sbjct:  830 PHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQV 908
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BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 9.000e-40
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQ---EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 237
            P   +DDLGPESRGFVENSYLRGLSPQ   EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE+VSAKYDGTLRNQNNQV
Sbjct:  828 PHFAKDDLGPESRGFVENSYLRGLSPQARAEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQV 909
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BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A7S2W8X2_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W8X2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 7.850e-39
Identity = 65/79 (82.28%), Postives = 69/79 (87.34%), Query Frame = 1 
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 237
            P   +DDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTA KTAETGYIQRRLVKA+E+V A+YDGTLR     V
Sbjct:  112 PHFSKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGNV 190
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BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: B8XGM3_9NEOP (DNA-directed RNA polymerase (Fragment) n=2 Tax=Pthirus TaxID=121227 RepID=B8XGM3_9NEOP)

HSP 1 Score: 130 bits (327), Expect = 2.220e-37
Identity = 61/79 (77.22%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 237
            P   +DD GPESRGFVENSYL GL+P EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+ESV   YDGT+RN   Q+
Sbjct:   18 PHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQL 96
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BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A7J7MNS3_9MAGN (DNA-directed RNA polymerase n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MNS3_9MAGN)

HSP 1 Score: 132 bits (333), Expect = 4.230e-37
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 237
            P   +DD GPESRGFVENSYLRGL+PQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E +  KYDGT+RN    V
Sbjct:   90 PHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 168
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BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A7S0FQY3_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FQY3_9STRA)

HSP 1 Score: 139 bits (349), Expect = 5.290e-37
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 237
            P   +DDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTA KTAETGYIQRRLVKA+E+V A+YDGTLR    QV
Sbjct:  452 PHFSKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGQV 530
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BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A0A7G366_ELAUM (DNA-directed RNA polymerase (Fragment) n=1 Tax=Elaeagnus umbellata TaxID=43233 RepID=A0A0A7G366_ELAUM)

HSP 1 Score: 133 bits (335), Expect = 6.010e-37
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 237
            P   +DD GPESRGFVENSYLRGL+PQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E +  KYDGT+RN    V
Sbjct:   63 PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 141
[Close]
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A7S2K6M5_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6M5_9STRA)

HSP 1 Score: 140 bits (353), Expect = 6.050e-37
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 237
            P   +DDLGPESRGFVENSYLRGLSPQEF+FHAMGGREGLIDTA KTAETGYIQRRLVKA+E+V AKYDGTLR  N QV
Sbjct:  797 PHFHKDDLGPESRGFVENSYLRGLSPQEFYFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMAKYDGTLRTSNGQV 875
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BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: UPI000FCD4A8B (DNA-directed RNA polymerase II subunit RPB1-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI000FCD4A8B)

HSP 1 Score: 132 bits (332), Expect = 7.200e-37
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 237
            P   +DD GPESRGFVENSYL GL+P EFFFHAMGGREGLIDTAVKTAETGYIQRRL+K++ESV  KYD T+RN  NQV
Sbjct:  123 PHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQV 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHC4_9STRA1.170e-4193.67DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
D8LRY3_ECTSI1.170e-4193.67DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A6H5L9Y2_9PHAE9.000e-4090.24DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S2W8X2_9STRA7.850e-3982.28DNA-directed RNA polymerase (Fragment) n=1 Tax=Euc... [more]
B8XGM3_9NEOP2.220e-3777.22DNA-directed RNA polymerase (Fragment) n=2 Tax=Pth... [more]
A0A7J7MNS3_9MAGN4.230e-3778.48DNA-directed RNA polymerase n=1 Tax=Kingdonia unif... [more]
A0A7S0FQY3_9STRA5.290e-3783.54DNA-directed RNA polymerase (Fragment) n=1 Tax=Min... [more]
A0A0A7G366_ELAUM6.010e-3778.48DNA-directed RNA polymerase (Fragment) n=1 Tax=Ela... [more]
A0A7S2K6M5_9STRA6.050e-3784.81DNA-directed RNA polymerase subunit (Fragment) n=1... [more]
UPI000FCD4A8B7.200e-3778.48DNA-directed RNA polymerase II subunit RPB1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52377contigH-elongata_contig52377:2731..3841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue2.9e-35
Seed eggNOG ortholog2880.D8LRY3
Preferred nameRPB1
KEGG rclassRC02795
KEGG koko:K03006
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05168,ko05169,map00230,map00240,map01100,map03020,map05016,map05168,map05169
KEGG ModuleM00180
GOsGO:0000428,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0019985,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0086@1,KOG0260@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930856.5005915-CDS-H-elongata_contig52377:2730..28111622930856.5005915-CDS-H-elongata_contig52377:2730..2811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52377 2731..2811 +
1691679599.7035346-CDS-H-elongata_contig52377:2730..28111691679599.7035346-CDS-H-elongata_contig52377:2730..2811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52377 2731..2811 +
1622930856.5420735-CDS-H-elongata_contig52377:3679..38411622930856.5420735-CDS-H-elongata_contig52377:3679..3841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52377 3680..3841 +
1691679599.7226334-CDS-H-elongata_contig52377:3679..38411691679599.7226334-CDS-H-elongata_contig52377:3679..3841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52377 3680..3841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52377.12543.1prot_H-elongata_contig52377.12543.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52377 2731..3841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52377.12543.1

>prot_H-elongata_contig52377.12543.1 ID=prot_H-elongata_contig52377.12543.1|Name=mRNA_H-elongata_contig52377.12543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAET
GYIQRRLVKALESVSAKYDGTLRNQNNQVW*
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mRNA from alignment at H-elongata_contig52377:2731..3841+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52377.12543.1 ID=mRNA_H-elongata_contig52377.12543.1|Name=mRNA_H-elongata_contig52377.12543.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1111bp|location=Sequence derived from alignment at H-elongata_contig52377:2731..3841+ (Himanthalia elongata Himel1 dioecious)
CCCCCCCTATGTCAGGACGACTTGGGGCCAGAAAGCCGTGGTTTTGTGGA
GAACTCCTACCTCAGAGGTTTATCACCTCAGGTGAGTGTTTACGGGGAGT
TGTAGGGAGGAAAGGAGTTTCGATACCGCCGGTTTAGTGTGGTCTGAGAA
AGAATTGGGATGATATGTTACCAACCTTTAGGATCTCTTTGTGTCTGTTG
ATTGATTGATTAAATTATCACATTTTTATTAAAAAATCCAGCCTGTGGCC
ACAAATAAGAAAAACACCATCTGGAAATAAAAAGAAATGACAATAGTCCA
TAATACTCGGGAAAAAGGAACATCTCCAATGAATAAAAAAAAAGAAAACA
AAAAGCGAAGACGTTGACATTTACATGGTTATCGATGCTTCCCGTCACGT
TTGGACATGCTAGTGTGTGCCGTAGTTCACCCCTGACTTTCTCTGCAGCG
ATCTATTTCGTCATGAAACGTTCCGCTCTTTGTGTCGCCGTCTTTCGCCA
TTCCCACACTGGGCTGCAATCGTCCAGTGGTTGGCGTTGATACCGAAATA
TTTCGAGGTCGTGCAGAAAATATCCCCCATCCACGTTTTTGTTTTGCCCC
TCCCCACGCAGCCCACACTAACCCCATAATTTCTGAATATAGGTTAATGT
ATGTCTTTGTGTGTGTTTGATGTTTTTGTATGTATCTGTGTGTATTTATT
AAATTTCACATAACCGCGCAATCCGGCCCTGTCATCCTAGTCCTTCTATG
CCACTCGTATTGATCCTCCTAGGGGGGGATCTCTCTCTGTGTGTGTGTTG
TGGCGTGCCCAAGCCATCGACTGTTAACTGCGACTGACGTTGGAGTTGAT
TTGTTGATTTCTGATGACGGTGATTCGAAGAGTAATAATGCCGATGTTTA
TTTCTGGTGATGGTCGATGCTGATGATTCGTTGCGACCCTCGAGCGCAGG
AGTTTTTCTTCCACGCCATGGGAGGCCGAGAGGGTCTGATCGACACGGCG
GTGAAAACGGCCGAGACCGGGTACATCCAGCGACGGCTCGTGAAGGCGCT
GGAATCCGTTAGCGCCAAGTATGACGGCACTCTGCGAAATCAAAACAATC
AGGTGTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig52377:2731..3841+

>mRNA_H-elongata_contig52377.12543.1 ID=mRNA_H-elongata_contig52377.12543.1|Name=mRNA_H-elongata_contig52377.12543.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig52377:2731..3841+ (Himanthalia elongata Himel1 dioecious)
CCCCCCCTATGTCAGGACGACTTGGGGCCAGAAAGCCGTGGTTTTGTGGA
GAACTCCTACCTCAGAGGTTTATCACCTCAGCCCCCCCTATGTCAGGACG
ACTTGGGGCCAGAAAGCCGTGGTTTTGTGGAGAACTCCTACCTCAGAGGT
TTATCACCTCAGGAGTTTTTCTTCCACGCCATGGGAGGCCGAGAGGGTCT
GATCGACACGGCGGTGAAAACGGCCGAGACCGGGTACATCCAGCGACGGC
TCGTGAAGGCGCTGGAATCCGTTAGCGCCAAGTATGACGGCACTCTGCGA
AATCAAAACAATCAGGTGTGGTGAGAGTTTTTCTTCCACGCCATGGGAGG
CCGAGAGGGTCTGATCGACACGGCGGTGAAAACGGCCGAGACCGGGTACA
TCCAGCGACGGCTCGTGAAGGCGCTGGAATCCGTTAGCGCCAAGTATGAC
GGCACTCTGCGAAATCAAAACAATCAGGTGTGGTGA
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