mRNA_H-elongata_contig52333.12540.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52333.12540.1
Unique NamemRNA_H-elongata_contig52333.12540.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52333.12540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52333contigH-elongata_contig52333:3068..3752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size685
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52333.12540.1prot_H-elongata_contig52333.12540.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52333 3070..3468 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930856.2814205-UTR-H-elongata_contig52333:3067..30691622930856.2814205-UTR-H-elongata_contig52333:3067..3069Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52333 3068..3069 +
1691679599.619279-UTR-H-elongata_contig52333:3067..30691691679599.619279-UTR-H-elongata_contig52333:3067..3069Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52333 3068..3069 +
1622930856.317926-UTR-H-elongata_contig52333:3468..37521622930856.317926-UTR-H-elongata_contig52333:3468..3752Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52333 3469..3752 +
1691679599.6441128-UTR-H-elongata_contig52333:3468..37521691679599.6441128-UTR-H-elongata_contig52333:3468..3752Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52333 3469..3752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930856.2978761-CDS-H-elongata_contig52333:3069..34681622930856.2978761-CDS-H-elongata_contig52333:3069..3468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52333 3070..3468 +
1691679599.6308193-CDS-H-elongata_contig52333:3069..34681691679599.6308193-CDS-H-elongata_contig52333:3069..3468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52333 3070..3468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52333.12540.1

>prot_H-elongata_contig52333.12540.1 ID=prot_H-elongata_contig52333.12540.1|Name=mRNA_H-elongata_contig52333.12540.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MRPVAMTVVAGVTGVGQVEAAGVIGKTAVAVEAAVVGLAAVADSAAGTSL
RWHRDLCVGRAAALKISNVKRPLGDRIQQDQNQERALSGCFLLLVRCHGP
MDQFFVRDISATRFGFKVSTTAWFTAKYWILF*
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mRNA from alignment at H-elongata_contig52333:3068..3752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52333.12540.1 ID=mRNA_H-elongata_contig52333.12540.1|Name=mRNA_H-elongata_contig52333.12540.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=685bp|location=Sequence derived from alignment at H-elongata_contig52333:3068..3752+ (Himanthalia elongata Himel1 dioecious)
GAATGCGCCCGGTCGCGATGACGGTGGTGGCTGGCGTAACAGGGGTGGGT
CAAGTGGAGGCAGCTGGCGTGATAGGGAAGACCGCGGTAGCGGTGGAGGC
GGCGGTAGTGGGGTTGGCAGCGGTAGCGGATTCGGCAGCCGGGACAAGCC
TTCGTTGGCACAGAGACCTTTGCGTGGGCAGGGCCGCAGCCTTAAAGATC
TCGAACGTTAAGAGACCGTTGGGAGATCGAATCCAGCAGGATCAGAATCA
GGAACGAGCGCTCTCTGGTTGTTTTCTTCTTTTGGTCAGATGTCATGGAC
CAATGGACCAATTTTTCGTCCGTGATATATCTGCGACTCGTTTCGGTTTT
AAGGTCTCAACAACCGCATGGTTCACAGCGAAGTATTGGATTTTATTCTA
GATGTCGAAAAGAGGTTCTAATAGGCCCTCGCTGTTCAGGTTGATGATTG
ATTGATGATTAACTAACGGCGTCCTTTATTTTGAATCAGGAAATTCTCAG
CGGTGGCGTCCACCACGATAATTCAAGCATTATAAATGATCAGGGGATCG
GTGGGTGTCCTCTGTTTGTAGGCGGGGCAGGTGCACATCGTATAATAATG
TCTATTTCTCCAAACAACTTACAAACATTTAAATTTTAAAACATATGAAA
TAATTCAAACCCTTGGTACACCACGCATTCTTAGG
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Coding sequence (CDS) from alignment at H-elongata_contig52333:3068..3752+

>mRNA_H-elongata_contig52333.12540.1 ID=mRNA_H-elongata_contig52333.12540.1|Name=mRNA_H-elongata_contig52333.12540.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig52333:3068..3752+ (Himanthalia elongata Himel1 dioecious)
ATGCGCCCGGTCGCGATGACGGTGGTGGCTGGCGTAACAGGGGTGGGTCA
AGTGGAGGCAGCTGGCGTGATAGGGAAGACCGCGGTAGCGGTGGAGGCGG
CGGTAGTGGGGTTGGCAGCGGTAGCGGATTCGGCAGCCGGGACAAGCCTT
CGTTGGCACAGAGACCTTTGCGTGGGCAGGGCCGCAGCCTTAAAGATCTC
GAACGTTAAGAGACCGTTGGGAGATCGAATCCAGCAGGATCAGAATCAGG
AACGAGCGCTCTCTGGTTGTTTTCTTCTTTTGGTCAGATGTCATGGACCA
ATGGACCAATTTTTCGTCCGTGATATATCTGCGACTCGTTTCGGTTTTAA
GGTCTCAACAACCGCATGGTTCACAGCGAAGTATTGGATTTTATTCTAGA
TGCGCCCGGTCGCGATGACGGTGGTGGCTGGCGTAACAGGGGTGGGTCAA
GTGGAGGCAGCTGGCGTGATAGGGAAGACCGCGGTAGCGGTGGAGGCGGC
GGTAGTGGGGTTGGCAGCGGTAGCGGATTCGGCAGCCGGGACAAGCCTTC
GTTGGCACAGAGACCTTTGCGTGGGCAGGGCCGCAGCCTTAAAGATCTCG
AACGTTAAGAGACCGTTGGGAGATCGAATCCAGCAGGATCAGAATCAGGA
ACGAGCGCTCTCTGGTTGTTTTCTTCTTTTGGTCAGATGTCATGGACCAA
TGGACCAATTTTTCGTCCGTGATATATCTGCGACTCGTTTCGGTTTTAAG
GTCTCAACAACCGCATGGTTCACAGCGAAGTATTGGATTTTATTCTAG
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