mRNA_H-elongata_contig52322.12539.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52322.12539.1
Unique NamemRNA_H-elongata_contig52322.12539.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52322.12539.1 vs. uniprot
Match: D7G4T9_ECTSI (Ankyrin domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T9_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.610e-31
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 3 
Query:  117 MAAPPKPLSVDIHTSVKDGDMAKVLEFLEEGGDVNVRCRYRTIPLHRAAAYNHQDIAKIL 296
            MAAPPKPLSVDIHTSVK+GDMAKVLEFLEEGGDVNVRCRYRTIPLHRAAAYNHQDIA +L
Sbjct:    1 MAAPPKPLSVDIHTSVKEGDMAKVLEFLEEGGDVNVRCRYRTIPLHRAAAYNHQDIASLL 60
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BLAST of mRNA_H-elongata_contig52322.12539.1 vs. uniprot
Match: A0A7Y4VJI2_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4VJI2_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 6.420e-6
Identity = 24/65 (36.92%), Postives = 43/65 (66.15%), Query Frame = 3 
Query:  132 KPLSVDIHTSVKDGDMAKVLEFLEEGGDVNVRCRYR-TIPLHRAAAYNHQDIAKILLEKGADLEV 323
            KP ++DIHT++  G++  V + +  G D+N++  +  + PL  AA +  +DIAK+L++ GADL +
Sbjct:   30 KPPTIDIHTAIVSGNLEAVQQHIAAGSDINIKDPFGGSSPLISAAVFGKEDIAKVLIDAGADLNI 94
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BLAST of mRNA_H-elongata_contig52322.12539.1 vs. uniprot
Match: A0A2V8UNF7_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8UNF7_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 6.130e-5
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 3 
Query:  135 PLSVDIHTSVKDGDMAKVLEFLEEGGDVNVRCRYRTIPLHRAAAYNHQDIAKILLEKGADLEV 323
            P   D+  +VK  D+A+V E L+ G +VN R      PLH AA   +QD+A++L+E+ AD+  
Sbjct:   14 PRDADLQVAVKAHDLARVRELLDAGANVNARDALGATPLHDAAWNGYQDLARLLIERHADVNA 76
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BLAST of mRNA_H-elongata_contig52322.12539.1 vs. uniprot
Match: UPI0019056530 (ankyrin repeat domain-containing protein n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI0019056530)

HSP 1 Score: 52.0 bits (123), Expect = 8.580e-5
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:  150 IHTSVKDGDMAKVLEFLEEGGDVNVRCRYRTIPLHRAAAYNHQDIAKILLEKGADLEV 323
            +H +V  GD+A+V+E + +G DVN    + T PLH AAA     IA IL+++GADLE 
Sbjct:  228 LHDAVNAGDVARVVELIAQGADVNAYDLFGT-PLHLAAAKGRTGIAVILIDRGADLEA 284
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52322.12539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G4T9_ECTSI1.610e-3195.00Ankyrin domain protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7Y4VJI2_9BACT6.420e-636.92Ankyrin repeat domain-containing protein n=1 Tax=C... [more]
A0A2V8UNF7_9BACT6.130e-539.68Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
UPI00190565308.580e-546.55ankyrin repeat domain-containing protein n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52322contigH-elongata_contig52322:3035..3859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.3e-25
Seed eggNOG ortholog2880.D7G4T9
KEGG koko:K21440
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-20_000380.1
Exons2
Model size486
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52322.12539.1prot_H-elongata_contig52322.12539.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52322 3151..3699 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930856.1716113-UTR-H-elongata_contig52322:3034..31501622930856.1716113-UTR-H-elongata_contig52322:3034..3150Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52322 3035..3150 +
1691679599.5676475-UTR-H-elongata_contig52322:3034..31501691679599.5676475-UTR-H-elongata_contig52322:3034..3150Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52322 3035..3150 +
1622930856.2314239-UTR-H-elongata_contig52322:3699..38591622930856.2314239-UTR-H-elongata_contig52322:3699..3859Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52322 3700..3859 +
1691679599.6064403-UTR-H-elongata_contig52322:3699..38591691679599.6064403-UTR-H-elongata_contig52322:3699..3859Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52322 3700..3859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930856.1946301-CDS-H-elongata_contig52322:3150..32661622930856.1946301-CDS-H-elongata_contig52322:3150..3266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52322 3151..3266 +
1691679599.5798259-CDS-H-elongata_contig52322:3150..32661691679599.5798259-CDS-H-elongata_contig52322:3150..3266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52322 3151..3266 +
1622930856.213548-CDS-H-elongata_contig52322:3605..36991622930856.213548-CDS-H-elongata_contig52322:3605..3699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52322 3606..3699 +
1691679599.5947518-CDS-H-elongata_contig52322:3605..36991691679599.5947518-CDS-H-elongata_contig52322:3605..3699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52322 3606..3699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52322.12539.1

>prot_H-elongata_contig52322.12539.1 ID=prot_H-elongata_contig52322.12539.1|Name=mRNA_H-elongata_contig52322.12539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MAAPPKPLSVDIHTSVKDGDMAKVLEFLEEGGDVNVRCRYRTIPLHRAAA
YNHQDIAKILLEKGADLEV*
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mRNA from alignment at H-elongata_contig52322:3035..3859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52322.12539.1 ID=mRNA_H-elongata_contig52322.12539.1|Name=mRNA_H-elongata_contig52322.12539.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=825bp|location=Sequence derived from alignment at H-elongata_contig52322:3035..3859+ (Himanthalia elongata Himel1 dioecious)
CACCGCCAACCCTGCGATTGGAAGGGGCACCCGATATCGAACATCTCTCC
GGGATTGAATCACGTTACCCGGGAAGGTAAAGGGAGACAACTAACGAACG
AGCTGTATTCGAAGATATGGCTGCTCCTCCCAAGCCTCTCAGTGTGGACA
TCCATACCTCTGTGAAAGATGGCGATATGGCGAAGGTTCTAGAGTTCTTG
GAAGAAGGGGGTGACGTCAACGTTCGGTGCAGGTGCTTTATGTTCAAGAC
AGTAACGAACGTTCTACGATATTGAAATCGAAGCGGATGGGCGCTATGGG
TCTGGGTGTAAACTCCCCCAAGTGGTTCGAGTAGAGCTAATGAAGCGAAA
ACTTGATAGTGTAACTGGTGACAGGCCGCGAAAGGCGTCTACAGAACCTC
CGTAGCCCTCCTTCTCCACAACCCATCCATGGTGTCTCACAGCGACGAGC
CTGACTACCTTTCAAGCCTCTGCGCTCGATTTACCGCTCGGATACCTAAA
TGAGAGATCTCCGTAGCTCATGTATGGCTACCTGAATGCGCGTGTTCACC
ATTTTCGTTGTGTATAATCAGGTACCGCACAATTCCACTGCACCGGGCTG
CGGCCTACAACCACCAGGATATCGCGAAGATCCTGCTCGAGAAAGGCGCC
GACTTGGAGGTTTGACTGATCGGAAATTACTCATGGAGACCGTGTAGGAC
TAACGGAAGACTGAGAAGTTTCACTTGGTATCCCAGAAAGAAATCACCAT
CTAAGGACATACATGCAGAGTACAAACGGAATATACGAGTCATAAAACAT
TGTGATCATACTGTACATACAAAGT
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Coding sequence (CDS) from alignment at H-elongata_contig52322:3035..3859+

>mRNA_H-elongata_contig52322.12539.1 ID=mRNA_H-elongata_contig52322.12539.1|Name=mRNA_H-elongata_contig52322.12539.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig52322:3035..3859+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGCTCCTCCCAAGCCTCTCAGTGTGGACATCCATACCTCTGTGAA
AGATGGCGATATGGCGAAGGTTCTAGAGTTCTTGGAAGAAGGGGGTGACG
TCAACGTTCGGTGCAGATGGCTGCTCCTCCCAAGCCTCTCAGTGTGGACA
TCCATACCTCTGTGAAAGATGGCGATATGGCGAAGGTTCTAGAGTTCTTG
GAAGAAGGGGGTGACGTCAACGTTCGGTGCAGGTACCGCACAATTCCACT
GCACCGGGCTGCGGCCTACAACCACCAGGATATCGCGAAGATCCTGCTCG
AGAAAGGCGCCGACTTGGAGGTTTGAGTACCGCACAATTCCACTGCACCG
GGCTGCGGCCTACAACCACCAGGATATCGCGAAGATCCTGCTCGAGAAAG
GCGCCGACTTGGAGGTTTGA
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