mRNA_H-elongata_contig52289.12535.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE) HSP 1 Score: 114 bits (285), Expect = 3.210e-27 Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 2
Query: 32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAEHRSF*KSGAIETFESWT-GEDEDIFDDFPVAFTHFLHLH 337
QY+E+FFVS+G P+Y+FVVWR+AV+ L+T+Y+ +M ++++ LA+AH DK FDV+ T+CDGA EHRSF AI F W G E F F V F H +HLH
Sbjct: 684 QYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLH 786
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 111 bits (277), Expect = 3.860e-26 Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 2
Query: 32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAEHRSF*KSGAIETFESWT-GEDEDIFDDFPVAFTHFLHLH 337
QY+E+FFVS+G P+Y+FVVWR+AV+ L+T+Y+ +M + ++ LA+AH DK FDVI T CDGA EHRSF AI F W G E F F V F H +HLH
Sbjct: 593 QYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLH 695
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE) HSP 1 Score: 105 bits (262), Expect = 4.050e-24 Identity = 55/100 (55.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query: 32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAEHRSF*KSGAIETFESWTGED---EDIFDDFPVAFTH 322
QYLEVF+VS+GNPKY+F V+R+AV+ L+ + +M +I L AH DK FDVIGTVCDGAAEHRSF + A TF W D E D+PVAF H
Sbjct: 441 QYLEVFWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEITNKLYEAHEDKKFDVIGTVCDGAAEHRSFQQHFATTTFSEWAKSDSVFEQRHKDYPVAFKH 540
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 4.170e-22 Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query: 32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAEHRSF*KSGAIETFESWTGED---EDIFDDFPVAFTH 322
QYLEV++VS+GNPKY+F V+R+AV+ L+ + +M +I+ L AH DK DVIGTVCDGA EHRSF A TF W E+ F DFP+AF H
Sbjct: 226 QYLEVWWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEIMLRLYEAHPDKKIDVIGTVCDGAGEHRSFQTKLATSTFGEWADPKSRLEERFADFPMAFNH 325
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 3.930e-21 Identity = 53/100 (53.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query: 41 EVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAEHRSF*KSGAIETFESWTGED---EDIFDDFPVAFTHFLH 331
+VF+VSLGNP Y+F V+R+AV+ L L +M I+ L AH+DK FDVIGTVCDGAAEHRSF K A F W D E DF VAF H H
Sbjct: 58 KVFWVSLGNPTYKFCVFREAVRGLTGPKLARMLDDIMTSLYQAHSDKNFDVIGTVCDGAAEHRSFQKYLAEIAFSEWARGDSAFEKRMGDFKVAFKHPSH 157
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 1.020e-19 Identity = 39/64 (60.94%), Postives = 56/64 (87.50%), Query Frame = 2
Query: 32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAE 223
QY+E FFVSLGNP+Y+FVVWR+AV+ L+T+Y+ +M ++ ++ L++AH DKGFDV+ TVCDGA+E
Sbjct: 211 QYVE-FFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLSIAHRDKGFDVVATVCDGASE 273
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.200e-17 Identity = 35/62 (56.45%), Postives = 53/62 (85.48%), Query Frame = 2
Query: 32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGA 217
QY+E++FVS+G P+Y+FVVWR+AV+ L+T+++ +M ++++ LA+AH DK FDVI TVCDGA
Sbjct: 451 QYVEMYFVSVGKPEYKFVVWREAVRSLSTDFIQRMLIRVMRSLAMAHPDKAFDVIATVCDGA 512
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 2.400e-17 Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 2
Query: 32 QYLEVFFVSLGNPKYRFVVWRQAVKLLNTEYLLKMTSKILKGLAVAHADKGFDVIGTVCDGAAEHRSF 235
QYLEVF+VS+GN KY+F V+R+AVK L L +M ++++ L H DK FDVI TVCDGAAEHRSF
Sbjct: 150 QYLEVFWVSIGNLKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTVHEDKQFDVICTVCDGAAEHRSF 217 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52289.12535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52289.12535.1 >prot_H-elongata_contig52289.12535.1 ID=prot_H-elongata_contig52289.12535.1|Name=mRNA_H-elongata_contig52289.12535.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp LEETLESIVASIPRGVFRQPRQSEVQVRGMATGCEVAKHRIPTENDLQNPback to top mRNA from alignment at H-elongata_contig52289:1692..2462- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52289.12535.1 ID=mRNA_H-elongata_contig52289.12535.1|Name=mRNA_H-elongata_contig52289.12535.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=771bp|location=Sequence derived from alignment at H-elongata_contig52289:1692..2462- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52289:1692..2462- >mRNA_H-elongata_contig52289.12535.1 ID=mRNA_H-elongata_contig52289.12535.1|Name=mRNA_H-elongata_contig52289.12535.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig52289:1692..2462- (Himanthalia elongata Himel1 dioecious)back to top |