mRNA_H-elongata_contig52287.12534.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52287.12534.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE) HSP 1 Score: 395 bits (1014), Expect = 9.210e-128 Identity = 221/286 (77.27%), Postives = 239/286 (83.57%), Query Frame = 1
Query: 1 QNNQAAADLKETVSGRYGGVGLVISGGKQPQPQPQEESQLLPKKANPGTGGRGVGGSKGKVDKPGAKKGKMG---DRVLSRDGITVVSAFEGYAFDAGMRAGDRITAINGQPVAGISVDKARDLLRGEPNSKVSISFIRDDKN-QNEQEITLTRRLVKLRDVKLATLVGDTKNAPVGYLELSGFSTGAAQELGQAYRYLDSIAEGGLRGVILDLRGNPGGLLEGAVDVSALFVPQGSNIVSIKGRNFQDITYGSSNGPVRPASTPLVVLTNGGTASAAEIVSGAVQ 846
QNNQAAADLKETVSGRYGGVGLVISGGKQ + E Q A GG+ GG + + + G +G +G +R +DGITVVSAFEGYAFDAGMRAGDRITAING+PV GI+V+KARD LRGEPNSKVSISF+RD N Q EQEITLTRRLVKLRDVKLA LVGD KNAPVGY++LSGFS GAAQEL QAYRYLDS AEGGLRGVILD+RGNPGGLLE AVDVSALFVP GS IVSIKGRNFQD+TYGSS GPVRPASTPLVVLTNGGTASAAEIV+GAVQ
Sbjct: 340 QNNQAAADLKETVSGRYGGVGLVISGGKQ-----RGERQQATGDAESPKGGQTSGGDRVQKEGGGKGRGTIGRGANREAGKDGITVVSAFEGYAFDAGMRAGDRITAINGKPVEGITVEKARDELRGEPNSKVSISFLRDTSNGQTEQEITLTRRLVKLRDVKLAALVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGGLLEAAVDVSALFVPDGSRIVSIKGRNFQDVTYGSSQGPVRPASTPLVVLTNGGTASAAEIVAGAVQ 620
BLAST of mRNA_H-elongata_contig52287.12534.1 vs. uniprot
Match: A0A835Z050_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z050_9STRA) HSP 1 Score: 227 bits (579), Expect = 1.480e-65 Identity = 139/288 (48.26%), Postives = 181/288 (62.85%), Query Frame = 1
Query: 1 QNNQAAADLKETVSGRYGGVGLVISGGKQPQPQPQEESQLLPKKANPGTGGRGVGGSKGKVDKPGAKKGKMGDRVLSRDGITVVSAFEGYAFDAGMRAGDRITAINGQPVAGISVDKARDLLRGEPNSKVSISFIRDDKNQNEQ------EITLTRRLVKLRDVKLATLVGDTKNAPVGYLELSGFSTGAAQELGQAYRYLDSIAEGGLRGVILDLRGNPGGLLEGAVDVSALFVPQGSNIVSIKGRNFQDITYGSSNGPVRPASTPLVVLTNGGTASAAEIVSGAVQ 846
+N + A L+E+VSG+YGGVGLVISG E++L ++ N + G +R+ I VVSAFEGYAFDAGMR GD + ++ G + G++VD RDLLRG P+++V + F R+ N + + E+ L RR+VK+ DVKLATLVG + VGY++LSGFS A ++L A LD A GL G+ILDLRGNPGGLLE AV+VSA VPQGS+IV KGR F + Y S++ P+R A PL +LTN GTASAAEIVSGA+Q
Sbjct: 175 ENKEDAVTLQESVSGKYGGVGLVISG----------ETKLAQQERN-----------------------RSGRNQPNRN-IQVVSAFEGYAFDAGMRPGDTLVSVGGTSIEGLTVDSVRDLLRGSPDTEVPVRFTREGVNLDGKGVPQPLEVILKRRMVKVSDVKLATLVGSPADG-VGYVQLSGFSPSAGKDLAAALHALDMTAPKGLSGLILDLRGNPGGLLESAVEVSAALVPQGSDIVFAKGRAFGEAKYKSASAPLRRAEVPLAILTNSGTASAAEIVSGAIQ 427
BLAST of mRNA_H-elongata_contig52287.12534.1 vs. uniprot
Match: A0A7S3XNJ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNJ2_HETAK) HSP 1 Score: 215 bits (548), Expect = 5.930e-61 Identity = 135/290 (46.55%), Postives = 173/290 (59.66%), Query Frame = 1
Query: 1 QNNQAAADLKETVSGRYGGVGLVISGGKQPQPQPQEESQLLPKKANPGTGGRGVGGSKGKVDKPGAKKGKMGDRVLSRDGITVVSAFEGYAFDAGMRAGDRITAINGQPVAGISVDKARDLLRGEPNSKVSISFIRDDKNQNEQEITLTRRLVKLRDVKLATL----VGDTKNAPVGYLELSGFSTGAAQELGQAYRYLDSIAEGG----LRGVILDLRGNPGGLLEGAVDVSALFVPQGSNIVSIKGRNFQDITYGSSNGPVRPASTPLVVLTNGGTASAAEIVSGAVQ 846
+N DL+E V GRYGGVGLVI+G GR + G P +V + +TVV AFEGYAFDAG+R GDR+ + GQ V G +V++ +DLLRG P + V++ F R + + E+ L RR V++ DVK TL V + PVGY+ L GFS GA +E+ AYR L A+ LRGV+LDLRGNPGGLL+ AVDV++L VP+ S +VS+KGRNF + + S+ PVRP S PLVVL +GGTASAAEIVSGAVQ
Sbjct: 211 ENEAQNQDLQEMVKGRYGGVGLVIAGQT--------------------AAGREAMAASGDDQDPA--------KVARAERVTVVDAFEGYAFDAGLRVGDRLLRVGGQDVRGKTVEQVKDLLRGPPGTSVAVEFERAGRRE-PAEVVLPRRQVRVPDVKCFTLLDPKVVGAPDFPVGYISLKGFSAGAGREVELAYRVLTERAQAAGASRLRGVVLDLRGNPGGLLDSAVDVASLLVPRDSTLVSVKGRNFPETGFVSTGDPVRPLSQPLVVLVDGGTASAAEIVSGAVQ 471
BLAST of mRNA_H-elongata_contig52287.12534.1 vs. uniprot
Match: A0A0G4EX77_VITBC (PDZ domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX77_VITBC) HSP 1 Score: 207 bits (526), Expect = 6.240e-58 Identity = 133/315 (42.22%), Postives = 193/315 (61.27%), Query Frame = 1
Query: 1 QNNQAAADLKETVSGRYGGVGLVISGGKQPQPQ-----------------PQEES---------------QLLPKKANPGTGGRGVGGSKGKVDKPGAKKGKMGDRVLSRDGITVVSAFEGYAFDAGMRAGDRITAINGQPVAGISVDKARDLLRGEPNSKVSISFIRDDKNQNEQEITLTRRLVKLRDVKLATLVGDTKNAPVGYLELSGFSTGAAQELGQAYRYLDSIA-EGGLRGVILDLRGNPGGLLEGAVDVSALFVPQGSNIVSIKGRNFQDITYGSSNGPVRPASTPLVVLTNGGTASAAEIVSGAVQ 846
+N QAA+DL+E V+GRYGGVGLVI+ + P + P+++S + +P++ P S + P +++ R GI V+ AFEGYAFDAGMR GD + + G+PVA +S ++ +++LRG P+S+V+++FIRD + Q +TLTRRLV++ +VKL +G +++ +GY++LSGFS + E+ A R+L A GL GV+L+LRGNPGGLL AVD+++LFVP+GS IVS +GR+F + Y S+ PV S LV+LTN TASAAEIVSGA+Q
Sbjct: 58 ENLQAASDLRENVAGRYGGVGLVIAVDRNPPQRVIDTATKEIDLILEAEKPKDDSIGPMASTLRPFTASAEPIPQRIAPSPSPP----SPSQPTSP-SQRASFPQRGKDPTGIIVMGAFEGYAFDAGMRVGDHLVEVEGRPVANLSPEEVKNMLRGPPDSQVNVAFIRDGVD-GLQSVTLTRRLVRVPNVKLFQYLG-SRDDGIGYIQLSGFSASSFAEMRVALRWLQQNAPRAGLDGVVLNLRGNPGGLLNSAVDIASLFVPKGSEIVSAQGRSFVRVAYKSTTEPVLDPSVKLVLLTNEATASAAEIVSGAIQ 365
BLAST of mRNA_H-elongata_contig52287.12534.1 vs. uniprot
Match: A0A0G4F0N3_VITBC (PDZ domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0N3_VITBC) HSP 1 Score: 207 bits (526), Expect = 3.480e-57 Identity = 134/310 (43.23%), Postives = 188/310 (60.65%), Query Frame = 1
Query: 1 QNNQAAADLKETVSGRYGGVGLVISGGKQPQPQ----PQEESQLLPKKANPGTGGRGVGGSKGKVDKPGAK-----------------------KGKMGDRVLSRDGITVVSAFEGYAFDAGMRAGDRITAINGQPVAGISVDKARDLLRGEPNSKVSISFIRDDKNQNEQEITLTRRLVKLRDVKLATLVGDTKNAPVGYLELSGFSTGAAQELGQAYRYLDSIA-EGGLRGVILDLRGNPGGLLEGAVDVSALFVPQGSNIVSIKGRNFQDITYGSSNGPVRPASTPLVVLTNGGTASAAEIVSGAVQ 846
+N QAA+DL+E V+GRYGGVGLVI+ + P + +E L+ + P G S + A+ + R GI V+ AFEGYAFDAGMR GD + + G+PVA +S ++ +++LRG P+S+V+++FIRD + Q +TLTRRLV++ +VKL +G +++ +GY++LSGFS + E+ A R+L A GL GV+LDLRGNPGGLL AVD+++LFVP+GS IVS +GR+F + Y S+ PV S LV+LTN TASAAEIVSGA+Q
Sbjct: 274 ENLQAASDLRENVAGRYGGVGLVIAVDRNPPQRVIDTATKEIDLILEAEKPKADSIGPMASTLRPFTASAEPIPQRIAPSPSPXXXXXPTSPSQRTSFPQRGKDPTGIIVMGAFEGYAFDAGMRVGDHLVEVEGRPVANLSPEEVKNMLRGPPDSQVNVAFIRDGVD-GLQSVTLTRRLVRVPNVKLFQYLG-SRDDGIGYIQLSGFSASSFAEMRVALRWLQQNAPRAGLDGVVLDLRGNPGGLLNSAVDIASLFVPKGSEIVSAQGRSFVRVAYKSTTEPVLDPSVKLVLLTNEATASAAEIVSGAIQ 581
BLAST of mRNA_H-elongata_contig52287.12534.1 vs. uniprot
Match: I2CP28_NANGC (Carboxyl-terminal protease (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP28_NANGC) HSP 1 Score: 200 bits (508), Expect = 3.960e-57 Identity = 118/207 (57.00%), Postives = 144/207 (69.57%), Query Frame = 1
Query: 232 RDGITVVSAFEGYAFDAGMRAGDRITAINGQPVAGISVDKARDLLRGEPNSKVSISFIRDD-KNQNEQEITLTRRLVKLRDVKLATLVGDTKNAPVGYLELSGFSTGAAQELGQAYRYLDSIAEGGLRGVILDLRGNPGGLLEGAVDVSALFVPQGSNIVSIKGRNFQDITYGSSNGPVR-PASTPLVVLTNGGTASAAEIVSGAVQ 846
R+GITVVSAFEGYAFDAGMR GD + A++ PV G SVD+ RDLLRG PN++V + F R +QE+ LTRRLV++ DVKL + +G ++ +GY++LSGFS A E A L A GL+G+ILDLR NPGGLL AVDV+++ VP S IVS KGR F + Y SS PVR PA+ PL VL N TASAAEIVSGAVQ
Sbjct: 19 REGITVVSAFEGYAFDAGMRVGDSLEAVDDVPVKGRSVDQVRDLLRGPPNTQVKVRFTRAGLPGPTQQELLLTRRLVRVPDVKLTSFLGPLRDG-IGYIQLSGFSQNAPAEFRFALELLRLHAPQGLQGLILDLRNNPGGLLTSAVDVASMLVPADSAIVSAKGRAFPPVAYSSSLAPVRDPATLPLAVLVNENTASAAEIVSGAVQ 224
BLAST of mRNA_H-elongata_contig52287.12534.1 vs. uniprot
Match: B7GBC3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GBC3_PHATC) HSP 1 Score: 204 bits (519), Expect = 1.370e-56 Identity = 132/298 (44.30%), Postives = 186/298 (62.42%), Query Frame = 1
Query: 10 QAAADLKETVSGRYGGVGLVISGGKQPQPQPQEES-QLLPKKANPGTGGR-----------GVGGSKGKVDKPGAKKGKMGDRVLSRDGITVVSAFEGYAFDAGMRAGDRITAINGQPV-AGISVDKARDLLRGEPNSKVSISFIRDDKNQNEQEITLTRRLVKLRDVKLATLVGDTKNAPVGYLELSGFSTGAAQELGQAYRYLD------SIAEGGLRGVILDLRGNPGGLLEGAVDVSALFVPQGSNIVSIKGRNFQDITYGSSNGPVRPASTPLVVLTNGGTASAAEIVSGAVQ 846
Q A L E++ GRYGGVGLVI+G + +P+ + QLLP A T + V + + + K+ + + GI VV+AFEGYAFD G+R GD++ AI+ +P+ A +V+ R++LRG+P + VSI F RD + + Q +T+ R +V+LRDVKLATLVG ++ +GY++LSGF++ A E+ QA YL + + L+G++LDLRGNPGGLL AVDV++L VP GS+IVS +GR F + Y S P+ +T L VL NG TASAAEIV+GAVQ
Sbjct: 260 QEAVALTESIEGRYGGVGLVIAGTPRAAAEPKSNANQLLPAAAQSDTASQEDTERNRNTMSNVMTEEEEDEYMDRKEQRKALEKARKQGIRVVTAFEGYAFDYGLRVGDKLLAIDDKPLTADTTVEDVRNMLRGQPGTLVSIEFNRDGVD-DVQTVTMPRAVVRLRDVKLATLVGSPRDG-IGYIQLSGFTSNAGAEMRQAITYLQQRTLDATNGDKSLQGLVLDLRGNPGGLLTSAVDVASLLVPNGSDIVSARGRGFPGMLYRSRVDPILNPNTKLAVLVNGQTASAAEIVAGAVQ 555
BLAST of mRNA_H-elongata_contig52287.12534.1 vs. uniprot
Match: A0A7S4IQW6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQW6_9STRA) HSP 1 Score: 202 bits (514), Expect = 9.420e-56 Identity = 140/327 (42.81%), Postives = 185/327 (56.57%), Query Frame = 1
Query: 1 QNNQAAADLKETVSGRYGGVGLVISGGKQPQPQPQEESQLLPKKANPGTGGRGVGGSKGKVD---KPGAKKGKMGDRVLS-----------------------------------RDGITVVSAFEGYAFDAGMRAGDRITAINGQPVAG-ISVDKARDLLRGEPNSKVSISFIRDDKNQNEQEITLTRRLVKLRDVKLATLVGDTKNAPVGYLELSGFSTGAAQELGQAYRYLDSIAE------GGLRGVILDLRGNPGGLLEGAVDVSALFVPQGSNIVSIKGRNFQDITYGSSNGPVRPASTPLVVLTNGGTASAAEIVSGAVQ 846
+ A +L E+V GRYGGVGLVIS P Q Q + +P A G GG + +D +P A G + R S + GI VVSAFEGYA+D GMR GDR+ AI+GQ + ++ + R+ LRGEP + V ++F+RD + E ++L R LVK+RDVKLAT VGD ++ VGY+++SGF+ +EL A L +AE GLRG++LDLRGNPGGLL AVDV++L VP+GS+IVS +GR F + Y S P+ +T L VL NG TASAAEIVSGA+Q
Sbjct: 265 EGKSEAVELNESVQGRYGGVGLVISSAT-PVRQ-QAAPKQIPTPATSGEGGGNKLLPQEALDDNARPDANDGDITSRTDSPVADSLDDDGDXXXXXXDATMEERMAEKKAVAKARKQGIRVVSAFEGYAYDYGMRVGDRLMAIDGQLLTPTMTAEDVRNKLRGEPGTSVEVTFVRDGV-EGENTVSLPRTLVKMRDVKLATFVGDPRDG-VGYVQVSGFAAETGRELRNAILALQRVAEDTSGGEAGLRGLVLDLRGNPGGLLTSAVDVASLVVPKGSDIVSARGRGFPSVLYRSRVDPILDPATKLAVLVNGQTASAAEIVSGAIQ 587
BLAST of mRNA_H-elongata_contig52287.12534.1 vs. uniprot
Match: A0A7S4QMK2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QMK2_9STRA) HSP 1 Score: 190 bits (483), Expect = 7.700e-53 Identity = 139/320 (43.44%), Postives = 184/320 (57.50%), Query Frame = 1
Query: 16 AADLKETVSGRYGGVGLVISGG--KQPQPQPQEE---------------SQLLPKKANPGTGGRGVGGSKGKVDKPGAKKGKMG-DRVLSRD------------------GITVVSAFEGYAFDAGMRAGDRITAINGQPVAG-ISVDKARDLLRGEPNSKVSISFIRDDKNQNEQEITLTRRLVKLRDVKLATLVGDTKNAPVGYLELSGFSTGAAQELGQAYRYLDSIAE---GG---LRGVILDLRGNPGGLLEGAVDVSALFVPQGSNIVSIKGRNFQDITYGSSNGPVRPASTPLVVLTNGGTASAAEIVSGAVQ 846
A + ETVSGRY GVGLVISG + P ++ S+LLPK A + + + DK + + D +L+ D GI VVSAFEGYAFD GMR GD+I AI+G+P+ SV+ R++LRG P + V ++F+RD + E ++L R+ V++ DVKLA LVGD K +GY+ L+GF+ A E+ + L +AE GG L+G++LDLRGNPGGLL AVDV++L VP+GS+IVS +GR F + Y S PV T LVVL N TASAAEIVSGAVQ
Sbjct: 259 AEAMTETVSGRYAGVGLVISGATLRDGIDIPDDDLTDVAIGGESTNEGGSKLLPKDAL--NDQKRLNQKESLDDKTPVTRNDIDKDDLLAEDEKEERLNKRRAMARVKDQGIRVVSAFEGYAFDYGMRVGDKIVAIDGKPITDKTSVEDVRNMLRGTPQTTVDVTFLRDGV-EGENTVSLPRQTVRIPDVKLAALVGDPKEG-MGYISLTGFAANAGLEVRNSIIGLQRLAENASGGERSLQGLVLDLRGNPGGLLTSAVDVASLLVPKGSDIVSARGRGFPGVVYRSQVDPVLDPQTKLVVLVNSQTASAAEIVSGAVQ 574
BLAST of mRNA_H-elongata_contig52287.12534.1 vs. uniprot
Match: A0A7S1YXK9_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YXK9_9STRA) HSP 1 Score: 190 bits (483), Expect = 1.670e-51 Identity = 139/320 (43.44%), Postives = 184/320 (57.50%), Query Frame = 1
Query: 16 AADLKETVSGRYGGVGLVISGG--KQPQPQPQEE---------------SQLLPKKANPGTGGRGVGGSKGKVDKPGAKKGKMG-DRVLSRD------------------GITVVSAFEGYAFDAGMRAGDRITAINGQPVAG-ISVDKARDLLRGEPNSKVSISFIRDDKNQNEQEITLTRRLVKLRDVKLATLVGDTKNAPVGYLELSGFSTGAAQELGQAYRYLDSIAE---GG---LRGVILDLRGNPGGLLEGAVDVSALFVPQGSNIVSIKGRNFQDITYGSSNGPVRPASTPLVVLTNGGTASAAEIVSGAVQ 846
A + ETVSGRY GVGLVISG + P ++ S+LLPK A + + + DK + + D +L+ D GI VVSAFEGYAFD GMR GD+I AI+G+P+ SV+ R++LRG P + V ++F+RD + E ++L R+ V++ DVKLA LVGD K +GY+ L+GF+ A E+ + L +AE GG L+G++LDLRGNPGGLL AVDV++L VP+GS+IVS +GR F + Y S PV T LVVL N TASAAEIVSGAVQ
Sbjct: 259 AEAMTETVSGRYAGVGLVISGATLRDGIDIPDDDLTDVAIGGESTNEGGSKLLPKDAL--NDQKRLNQKESLDDKTPVTRNDIDKDDLLAEDEKEERLNKRRAMARVKDQGIRVVSAFEGYAFDYGMRVGDKIVAIDGKPITDKTSVEDVRNMLRGTPQTTVDVTFLRDGV-EGENTVSLPRQTVRIPDVKLAALVGDPKEG-MGYISLTGFAANAGLEVRNSIIGLQRLAENASGGERSLQGLVLDLRGNPGGLLTSAVDVASLLVPKGSDIVSARGRGFPGVVYRSQVDPVLDPQTKLVVLVNSQTASAAEIVSGAVQ 574 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52287.12534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52287.12534.1 >prot_H-elongata_contig52287.12534.1 ID=prot_H-elongata_contig52287.12534.1|Name=mRNA_H-elongata_contig52287.12534.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp QNNQAAADLKETVSGRYGGVGLVISGGKQPQPQPQEESQLLPKKANPGTGback to top mRNA from alignment at H-elongata_contig52287:142..3554- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52287.12534.1 ID=mRNA_H-elongata_contig52287.12534.1|Name=mRNA_H-elongata_contig52287.12534.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3413bp|location=Sequence derived from alignment at H-elongata_contig52287:142..3554- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52287:142..3554- >mRNA_H-elongata_contig52287.12534.1 ID=mRNA_H-elongata_contig52287.12534.1|Name=mRNA_H-elongata_contig52287.12534.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1692bp|location=Sequence derived from alignment at H-elongata_contig52287:142..3554- (Himanthalia elongata Himel1 dioecious)back to top |