mRNA_H-elongata_contig5224.12527.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 214 bits (546), Expect = 1.660e-58 Identity = 127/270 (47.04%), Postives = 162/270 (60.00%), Query Frame = 1
Query: 259 TSAEWVGEVNFTSNYAHSDGGAVGSMSLDSQVSSSDLNNSYSDDGLTIVVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQ--SLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGC 1062
++A W G NFTSN A DGGA+ S LDS+ N +S + +G T FFNN C G GGGMAL +LV++ I+F EN+A VSGGAV++ G+G F SFV N AQIGGAV GSG + +++ + NPTTF+ C+F+ N A GGAI +A+G D+F+DT FE N A GGALRLAG+ SI NCSF +N S+ GG AV NIG + S + F GN F+C FL +N+SDD F TVC GC
Sbjct: 679 STASWTGVTNFTSNQAFFDGGAIVSPQLDSEY------------------NPSESTLNFNGTTTFFNNRCGGNGGGMALYGGCALVID-TEMGISFIENTAAVSGGAVFVSSAGTGLAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDI--EPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNESDDLFETVCDGC 927
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 204 bits (520), Expect = 4.710e-55 Identity = 118/256 (46.09%), Postives = 150/256 (58.59%), Query Frame = 1
Query: 313 DGGAVGSMSLDSQVSSSDLNNSYSDDGLTIVVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQIL--NPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGCFGEC 1074
DGG +GS S DS S+ G T+V+NG T F NNTC GG +AL+ L VN +N++F N+A V+GGAV++ G G G F F+ N AQ+GGAV GSG +E I NPTTF+ C FIDN A GGAI SA+GQD F+++ F+GN+A GG LRLAG+ S+ CSF DNISD GG AV NIG + S TF GNVF+CDP +L++N S + + C GC C
Sbjct: 536 DGGVIGSFSTDS----------VSNQGSTLVMNGT---------TAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSGNL----KENADISPPNPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLDYNASGNPYEAACGGCETAC 768
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 197 bits (501), Expect = 1.710e-52 Identity = 120/281 (42.70%), Postives = 158/281 (56.23%), Query Frame = 1
Query: 238 ALFVTVGTSAEWVGEVNFTSNYAHSDGGAVGSMSLDSQVSSSDLNNSYSDDGLTIVVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQS--LVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGCFGEC 1074
A+F+ G++A DGGA+ S D ++ N E+S + I+G T FFNN C G GG + L+ + LVVN ++ F+EN+A V+GGAV++ G G+G F N +F N AQ+GGAV GSG + + + + NPTTFE C F+ N A GGAI SA+G DYF+DT FE N A GGALRLAG+ SI +CSF +N SD +GG AV NIG + S +F N F+C TFL +N S D F VC GC C
Sbjct: 863 AIFLRNGSTAXXXXXXXXXXXXXFFDGGAIVSPEFDDEL------------------NLENSAILINGTTSFFNNACGGNGGAVTLLGACDLVVN-PAASVRFTENAAAVAGGAVFVSGAGAGPAFANTTFTSNSAQVGGAVAVFGSGNSKGVADI--EPPNPTTFERCWFVGNRATATGGAIDSAAGHDYFVDTTFEDNAAGTGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTFLGYNASADLFEAVCNGCQTAC 1122
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 196 bits (498), Expect = 3.280e-52 Identity = 109/224 (48.66%), Postives = 138/224 (61.61%), Query Frame = 1
Query: 403 VVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGCFGEC 1074
V++ EDS ++I GPT F NNT GG +AL+ L ++ N +F +NSA ++GGAVY+ G F +V F N AQ+GGAV + GSG E Q+L PTTF C+F N A GGA+ SASGQD F DT+F GNQA GGALRLAG S+ NCSF +N+SD G AV N+G + + TF GNVFNC P+TFLN+ S D C+GC C
Sbjct: 311 VLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTGETSFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSGNVK--GGENDQLL-PTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFLNYT-SGDALDEACSGCQTTC 530
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 189 bits (479), Expect = 1.550e-49 Identity = 104/206 (50.49%), Postives = 131/206 (63.59%), Query Frame = 1
Query: 403 VVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNF 1020
V++ EDS ++I GPT F NNT GG +AL+ L ++ N + F +NSA ++GGAVY+ G F +V F N AQ+GGAV A GSG E Q+L PTTF C+F N A GGA+ SASGQD F DT+F GNQA GGALRLAG S+ NCSF +NISD G AV N+G + + +F GNVFNC P+TFLN+
Sbjct: 2224 VLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTEETNFVDNSADLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSALGSGNVK--GGENDQLL-PTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGNVFNCAPDTFLNY 2426
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE) HSP 1 Score: 182 bits (463), Expect = 1.020e-47 Identity = 112/285 (39.30%), Postives = 146/285 (51.23%), Query Frame = 1
Query: 256 GTSAEWVGEVNFTSNYAHSDGGAVGSMSLDSQVSSSDLNNSYSDDGLTIVVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSD------------DHFGTVCTGCFGEC 1074
G+ G+ N A DGGAVGS++ DS V++ EDS ++I GPT F NNT GG +AL+ L ++ N + +F +NSA ++GG VY+ G F +V F N A +GGA L PTTF C+F N GGA+ SASGQD F DT+F GNQA GGALRLAG S++NCSF +N+SD G AV N+G + + +F GNVFNC P+TFLN+ D D C+GC C
Sbjct: 290 GSYVSSTGDTKVVRNGALVDGGAVGSVASDS------------------VLSPEDSTLSIDGPTAFVNNTSGENGGALALLGELSISVNTEESSFVDNSADLAGGTVYVSDTAIGPTFSDVIFDSNFAHVGGA-------------------LLPTTFSRCRFTYNRETATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNYTVRDTMLTCSLSTMSGDPLDEACSGCQATC 537
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 175 bits (443), Expect = 8.320e-45 Identity = 94/220 (42.73%), Postives = 132/220 (60.00%), Query Frame = 1
Query: 418 DSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDH-FGTVCTGCFGEC 1074
+S + I+G T FFNNTC GG +AL + ++ N +++F+ NSAG +GGAV++ G G G F +VSF+ N AQ+GGA GSG D + PT F+ C+FIDN A T GGA+ SA+GQD ++++F+GN A+VGGALRLAG +S G AV NIG + + ++F GN F C P+ FL ++ +D+ F VC GC C
Sbjct: 723 ESSLVINGTTTFFNNTCGENGGSLALFDACSLDINTADVSFTGNSAGFAGGAVFVSGAGIGPTFSDVSFISNFAQVGGAASVFGSGN----DRGMLSPIIPTKFDRCRFIDNVATTSGGAVDSAAGQDIVVNSVFKGNSAEVGGALRLAGXXXXXXXXXXXXVSGRQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLFLEYDATDNGTFEAVCDGCRVAC 938
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 173 bits (439), Expect = 2.720e-44 Identity = 98/227 (43.17%), Postives = 127/227 (55.95%), Query Frame = 1
Query: 394 LTIVVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGCFGEC 1074
L V N S + I+GPT F NNTC G GGG+A L V+ + +TFS N+A V+GGAV++ G G G F AV GSG + + +PTTF+ C F+ N A GGA SA+GQD F+ +F GN+A GGALR+AG+ S++NCSF DN+SD G A+ NIG++ F NVF+C TFL+ N S D F VC GC C
Sbjct: 514 LDSVYNLRSSTLLINGPTAFVNNTCGGSGGGLAAFDGLSVDIDTAGVTFSGNAAEVAGGAVFVSGAGVGFVFXXXXXXXXXXXXXXAVSIVGSGNLKGFFD--LEWPSPTTFDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNASGDPFEAVCAGCDIVC 738
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE) HSP 1 Score: 173 bits (439), Expect = 2.800e-44 Identity = 115/288 (39.93%), Postives = 158/288 (54.86%), Query Frame = 1
Query: 232 GGALFVTVGTSAEWVGEVNFTSNYAHSDGGAVGSMSLDSQVSSSDLNNSYSDDGLTIVVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVN--FNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNK-----SDDHFGTVCTGCFGEC 1074
GGA V + + W GE FTSN A S+GG + + S + DG+ S +T++ T FFNNT G + L + +N FN +I+F NSAGV+GGA+++ G+ +G F V+F NVA+IGGAV + G I+ G + NPTTF+ C+F+DN + GGAI SA+G+D F ++FEGN A GGALRLAGS NC+F N +D G AV NIGY+ F GN F+C +L+F + SD F +C+GC C
Sbjct: 604 GGAASV-LSCNVSWTGETIFTSNVAQSEGGGITASSAN--------------DGIL-------SNITMNATTIFFNNTAATNGRAIVLFEDAALNSIFNM-DISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSSFRCG----IEPSG--VDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGSEYFFNCTFVGNTADDGEGAAVSNIGYISEMENTFFSGNRFDCRSRMYLDFIQVRTFASDYPFEVMCSGCEVTC 862
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 164 bits (416), Expect = 3.180e-41 Identity = 96/232 (41.38%), Postives = 129/232 (55.60%), Query Frame = 1
Query: 388 DGLTIVVNG---EDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGCFGEC 1074
DG + N +S++ I+G T F +N+ G GGGMAL + +N +++F NSAGV+G A+++ + G +F + GSGT DE G PTTF+ C+FI N A + GGAI SA+G+D +++FEGN A GGALRLAG I NCSF +N SD G AV NIG++ S T +F GN F+C TF N S DHF +C GC C
Sbjct: 797 DGGAVATNALSTSNSILFINGTTIFSDNSAGGNGGGMALFVDVALNIGTVDVSFLGNSAGVAGXAMFVSSVSIGPRFNXXXXXXXXXXXXXXISIFGSGT----DESGDL---PTTFDTCQFIGNQAISTGGAINSAAGEDAIENSVFEGNSAGTGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTFRNVTGSVDHFEAICNGCETTC 1021 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5224.12527.1 >prot_H-elongata_contig5224.12527.1 ID=prot_H-elongata_contig5224.12527.1|Name=mRNA_H-elongata_contig5224.12527.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp MSLDSQVSSSDLNNSYSDDGLTIVVNGEDSVVTISGPTRFFNNTCNGKGGback to top mRNA from alignment at H-elongata_contig5224:3826..5516- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5224.12527.1 ID=mRNA_H-elongata_contig5224.12527.1|Name=mRNA_H-elongata_contig5224.12527.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1691bp|location=Sequence derived from alignment at H-elongata_contig5224:3826..5516- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5224:3826..5516- >mRNA_H-elongata_contig5224.12527.1 ID=mRNA_H-elongata_contig5224.12527.1|Name=mRNA_H-elongata_contig5224.12527.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at H-elongata_contig5224:3826..5516- (Himanthalia elongata Himel1 dioecious)back to top |