mRNA_H-elongata_contig5224.12527.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5224.12527.1
Unique NamemRNA_H-elongata_contig5224.12527.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 1.660e-58
Identity = 127/270 (47.04%), Postives = 162/270 (60.00%), Query Frame = 1
Query:  259 TSAEWVGEVNFTSNYAHSDGGAVGSMSLDSQVSSSDLNNSYSDDGLTIVVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQ--SLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGC 1062
            ++A W G  NFTSN A  DGGA+ S  LDS+                   N  +S +  +G T FFNN C G GGGMAL    +LV++     I+F EN+A VSGGAV++   G+G  F   SFV N AQIGGAV   GSG +  +++   +  NPTTF+ C+F+ N A   GGAI +A+G D+F+DT FE N A  GGALRLAG+ SI NCSF +N S+  GG AV NIG + S  +  F GN F+C    FL +N+SDD F TVC GC
Sbjct:  679 STASWTGVTNFTSNQAFFDGGAIVSPQLDSEY------------------NPSESTLNFNGTTTFFNNRCGGNGGGMALYGGCALVID-TEMGISFIENTAAVSGGAVFVSSAGTGLAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDI--EPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNESDDLFETVCDGC 927          
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 4.710e-55
Identity = 118/256 (46.09%), Postives = 150/256 (58.59%), Query Frame = 1
Query:  313 DGGAVGSMSLDSQVSSSDLNNSYSDDGLTIVVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQIL--NPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGCFGEC 1074
            DGG +GS S DS           S+ G T+V+NG          T F NNTC   GG +AL+  L VN   +N++F  N+A V+GGAV++ G G G  F    F+ N AQ+GGAV   GSG      +E   I   NPTTF+ C FIDN A   GGAI SA+GQD F+++ F+GN+A  GG LRLAG+ S+  CSF DNISD  GG AV NIG + S    TF GNVF+CDP  +L++N S + +   C GC   C
Sbjct:  536 DGGVIGSFSTDS----------VSNQGSTLVMNGT---------TAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSGNL----KENADISPPNPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLDYNASGNPYEAACGGCETAC 768          
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 1.710e-52
Identity = 120/281 (42.70%), Postives = 158/281 (56.23%), Query Frame = 1
Query:  238 ALFVTVGTSAEWVGEVNFTSNYAHSDGGAVGSMSLDSQVSSSDLNNSYSDDGLTIVVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQS--LVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGCFGEC 1074
            A+F+  G++A               DGGA+ S   D ++                  N E+S + I+G T FFNN C G GG + L+ +  LVVN    ++ F+EN+A V+GGAV++ G G+G  F N +F  N AQ+GGAV   GSG +  + +   +  NPTTFE C F+ N A   GGAI SA+G DYF+DT FE N A  GGALRLAG+ SI +CSF +N SD +GG AV NIG + S    +F  N F+C   TFL +N S D F  VC GC   C
Sbjct:  863 AIFLRNGSTAXXXXXXXXXXXXXFFDGGAIVSPEFDDEL------------------NLENSAILINGTTSFFNNACGGNGGAVTLLGACDLVVN-PAASVRFTENAAAVAGGAVFVSGAGAGPAFANTTFTSNSAQVGGAVAVFGSGNSKGVADI--EPPNPTTFERCWFVGNRATATGGAIDSAAGHDYFVDTTFEDNAAGTGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTFLGYNASADLFEAVCNGCQTAC 1122          
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 3.280e-52
Identity = 109/224 (48.66%), Postives = 138/224 (61.61%), Query Frame = 1
Query:  403 VVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGCFGEC 1074
            V++ EDS ++I GPT F NNT    GG +AL+  L ++ N    +F +NSA ++GGAVY+     G  F +V F  N AQ+GGAV + GSG       E  Q+L PTTF  C+F  N A   GGA+ SASGQD F DT+F GNQA  GGALRLAG  S+ NCSF +N+SD   G AV N+G +   +  TF GNVFNC P+TFLN+  S D     C+GC   C
Sbjct:  311 VLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTGETSFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSGNVK--GGENDQLL-PTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFLNYT-SGDALDEACSGCQTTC 530          
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.550e-49
Identity = 104/206 (50.49%), Postives = 131/206 (63.59%), Query Frame = 1
Query:  403 VVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNF 1020
            V++ EDS ++I GPT F NNT    GG +AL+  L ++ N +   F +NSA ++GGAVY+     G  F +V F  N AQ+GGAV A GSG       E  Q+L PTTF  C+F  N A   GGA+ SASGQD F DT+F GNQA  GGALRLAG  S+ NCSF +NISD   G AV N+G +   +  +F GNVFNC P+TFLN+
Sbjct: 2224 VLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTEETNFVDNSADLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSALGSGNVK--GGENDQLL-PTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGNVFNCAPDTFLNY 2426          
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.020e-47
Identity = 112/285 (39.30%), Postives = 146/285 (51.23%), Query Frame = 1
Query:  256 GTSAEWVGEVNFTSNYAHSDGGAVGSMSLDSQVSSSDLNNSYSDDGLTIVVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSD------------DHFGTVCTGCFGEC 1074
            G+     G+     N A  DGGAVGS++ DS                  V++ EDS ++I GPT F NNT    GG +AL+  L ++ N +  +F +NSA ++GG VY+     G  F +V F  N A +GGA                   L PTTF  C+F  N     GGA+ SASGQD F DT+F GNQA  GGALRLAG  S++NCSF +N+SD   G AV N+G +   +  +F GNVFNC P+TFLN+   D            D     C+GC   C
Sbjct:  290 GSYVSSTGDTKVVRNGALVDGGAVGSVASDS------------------VLSPEDSTLSIDGPTAFVNNTSGENGGALALLGELSISVNTEESSFVDNSADLAGGTVYVSDTAIGPTFSDVIFDSNFAHVGGA-------------------LLPTTFSRCRFTYNRETATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNYTVRDTMLTCSLSTMSGDPLDEACSGCQATC 537          
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 8.320e-45
Identity = 94/220 (42.73%), Postives = 132/220 (60.00%), Query Frame = 1
Query:  418 DSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDH-FGTVCTGCFGEC 1074
            +S + I+G T FFNNTC   GG +AL  +  ++ N  +++F+ NSAG +GGAV++ G G G  F +VSF+ N AQ+GGA    GSG     D      + PT F+ C+FIDN A T GGA+ SA+GQD  ++++F+GN A+VGGALRLAG            +S    G AV NIG + +   ++F GN F C P+ FL ++ +D+  F  VC GC   C
Sbjct:  723 ESSLVINGTTTFFNNTCGENGGSLALFDACSLDINTADVSFTGNSAGFAGGAVFVSGAGIGPTFSDVSFISNFAQVGGAASVFGSGN----DRGMLSPIIPTKFDRCRFIDNVATTSGGAVDSAAGQDIVVNSVFKGNSAEVGGALRLAGXXXXXXXXXXXXVSGRQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLFLEYDATDNGTFEAVCDGCRVAC 938          
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 2.720e-44
Identity = 98/227 (43.17%), Postives = 127/227 (55.95%), Query Frame = 1
Query:  394 LTIVVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGCFGEC 1074
            L  V N   S + I+GPT F NNTC G GGG+A    L V+ +   +TFS N+A V+GGAV++ G G G  F              AV   GSG      +   +  +PTTF+ C F+ N A   GGA  SA+GQD F+  +F GN+A  GGALR+AG+ S++NCSF DN+SD   G A+ NIG++       F  NVF+C   TFL+ N S D F  VC GC   C
Sbjct:  514 LDSVYNLRSSTLLINGPTAFVNNTCGGSGGGLAAFDGLSVDIDTAGVTFSGNAAEVAGGAVFVSGAGVGFVFXXXXXXXXXXXXXXAVSIVGSGNLKGFFD--LEWPSPTTFDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNASGDPFEAVCAGCDIVC 738          
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.800e-44
Identity = 115/288 (39.93%), Postives = 158/288 (54.86%), Query Frame = 1
Query:  232 GGALFVTVGTSAEWVGEVNFTSNYAHSDGGAVGSMSLDSQVSSSDLNNSYSDDGLTIVVNGEDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVN--FNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNK-----SDDHFGTVCTGCFGEC 1074
            GGA  V +  +  W GE  FTSN A S+GG + + S +              DG+        S +T++  T FFNNT    G  + L +   +N  FN  +I+F  NSAGV+GGA+++ G+ +G  F  V+F  NVA+IGGAV +   G    I+  G  + NPTTF+ C+F+DN   + GGAI SA+G+D F  ++FEGN A  GGALRLAGS    NC+F  N +D   G AV NIGY+       F GN F+C    +L+F +     SD  F  +C+GC   C
Sbjct:  604 GGAASV-LSCNVSWTGETIFTSNVAQSEGGGITASSAN--------------DGIL-------SNITMNATTIFFNNTAATNGRAIVLFEDAALNSIFNM-DISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSSFRCG----IEPSG--VDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGSEYFFNCTFVGNTADDGEGAAVSNIGYISEMENTFFSGNRFDCRSRMYLDFIQVRTFASDYPFEVMCSGCEVTC 862          
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.180e-41
Identity = 96/232 (41.38%), Postives = 129/232 (55.60%), Query Frame = 1
Query:  388 DGLTIVVNG---EDSVVTISGPTRFFNNTCNGKGGGMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGNVAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIFSASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAVFNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGCFGEC 1074
            DG  +  N     +S++ I+G T F +N+  G GGGMAL   + +N    +++F  NSAGV+G A+++  +  G +F               +   GSGT    DE G     PTTF+ C+FI N A + GGAI SA+G+D   +++FEGN A  GGALRLAG   I NCSF +N SD   G AV NIG++ S T  +F GN F+C   TF N   S DHF  +C GC   C
Sbjct:  797 DGGAVATNALSTSNSILFINGTTIFSDNSAGGNGGGMALFVDVALNIGTVDVSFLGNSAGVAGXAMFVSSVSIGPRFNXXXXXXXXXXXXXXISIFGSGT----DESGDL---PTTFDTCQFIGNQAISTGGAINSAAGEDAIENSVFEGNSAGTGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTFRNVTGSVDHFEAICNGCETTC 1021          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5224.12527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LIY0_ECTSI1.660e-5847.04Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G301_ECTSI4.710e-5546.09Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI1.710e-5242.70Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7FHH1_ECTSI3.280e-5248.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI1.550e-4950.49LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KR67_9PHAE1.020e-4739.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X5_ECTSI8.320e-4542.73Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7FTL7_ECTSI2.720e-4443.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K1P8_9PHAE2.800e-4439.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0E9_9PHAE3.180e-4141.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5224contigH-elongata_contig5224:3826..5516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.1
Seed ortholog evalue7.4e-50
Seed eggNOG ortholog2880.D7G301
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1077
Cds size744
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5224.12527.1prot_H-elongata_contig5224.12527.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5224 3826..5167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.6832852-CDS-H-elongata_contig5224:3825..38761622930854.6832852-CDS-H-elongata_contig5224:3825..3876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5224 3826..3876 -
1691679599.0394363-CDS-H-elongata_contig5224:3825..38761691679599.0394363-CDS-H-elongata_contig5224:3825..3876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5224 3826..3876 -
1622930854.701144-CDS-H-elongata_contig5224:4474..51671622930854.701144-CDS-H-elongata_contig5224:4474..5167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5224 4475..5167 -
1691679599.0503695-CDS-H-elongata_contig5224:4474..51671691679599.0503695-CDS-H-elongata_contig5224:4474..5167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5224 4475..5167 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.7195275-UTR-H-elongata_contig5224:5167..52751622930854.7195275-UTR-H-elongata_contig5224:5167..5275Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5224 5168..5275 -
1691679599.061287-UTR-H-elongata_contig5224:5167..52751691679599.061287-UTR-H-elongata_contig5224:5167..5275Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5224 5168..5275 -
1622930854.7359664-UTR-H-elongata_contig5224:5291..55161622930854.7359664-UTR-H-elongata_contig5224:5291..5516Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5224 5292..5516 -
1691679599.070948-UTR-H-elongata_contig5224:5291..55161691679599.070948-UTR-H-elongata_contig5224:5291..5516Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5224 5292..5516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5224.12527.1

>prot_H-elongata_contig5224.12527.1 ID=prot_H-elongata_contig5224.12527.1|Name=mRNA_H-elongata_contig5224.12527.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp
MSLDSQVSSSDLNNSYSDDGLTIVVNGEDSVVTISGPTRFFNNTCNGKGG
GMALVQSLVVNFNRKNITFSENSAGVSGGAVYIEGIGSGTKFENVSFVGN
VAQIGGAVHATGSGTTVTIDEEGKQILNPTTFEGCKFIDNFAFTMGGAIF
SASGQDYFLDTLFEGNQAKVGGALRLAGSVSIKNCSFFDNISDLDGGPAV
FNIGYMPSFTRNTFRGNVFNCDPETFLNFNKSDDHFGTVCTGCFGECP
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mRNA from alignment at H-elongata_contig5224:3826..5516-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5224.12527.1 ID=mRNA_H-elongata_contig5224.12527.1|Name=mRNA_H-elongata_contig5224.12527.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1691bp|location=Sequence derived from alignment at H-elongata_contig5224:3826..5516- (Himanthalia elongata Himel1 dioecious)
CGGGGCTTTGTACTTGTGGAGTGGCTGCATTGCTACATGGAACACGGGAT CCGACACCCCTATATATAGTCATAATGAAAGTGATTGGGTTTCACACGTA TTGAGCGGTAGTAATTCCGCTTGGATTCCGATTTCAACATTTTCCGGTAA TAGTGCTCAATTTAATGGTGGTGCTGTGTTAGCCGGAAAAAACGGAATTT TGACTTGGATAAGCAATGCTCTTTTTATCGACAATAATGCCAACAACGGT GGCGCTCTTTTCGTAACTGTTGGAACTAGTGCAGAGTGGGTCGGAGAGGT CAACTTTACCTCCAACTACGCACATTCGGACGGAGGCGCCGTAGGGTCAA TGTCACTCGACTCACAGGTGTCTTCTTCTGACTTAAACAATTCTTACTCT GACGATGGCCTTACCATAGTTGTAAACGGTGAGGATTCGGTTGTAACAAT AAGCGGACCAACAAGATTTTTTAACAACACTTGCAATGGTAAAGGGGGAG GCATGGCGTTAGTTCAATCGTTAGTCGTAAATTTCAACAGGAAGAACATT ACATTTTCGGAAAATTCGGCTGGGGTATCTGGCGGAGCAGTATACATCGA AGGTATCGGGAGTGGGACGAAATTTGAGAATGTGTCTTTCGTTGGAAACG TCGCCCAAATCGGTGGCGCAGTGCATGCTACGGGAAGCGGGACCACAGTG ACCATCGACGAAGAAGGCAAGCAAATTCTAAATCCGACGACGTTCGAAGG TTGTAAATTCATCGACAACTTTGCCTTTACGATGGGTGGAGCAATCTTCA GCGCTTCTGGCCAAGATTATTTCCTTGATACTCTCTTCGAGGGCAATCAA GCTAAAGTCGGGGGGGCTTTGAGACTTGCTGGATCGGTTTCCATAAAAAA TTGTTCATTTTTTGACAACATTTCCGACCTTGATGGGGGACCAGCCGTGT TCAATATCGGATATATGCCAAGCTTTACAAGAAACACGTTTCGTGGAAAC GTCTTCAACTGCGATCCGGAGACTTTTCTAAACTTCAACAAGGTATGCTC CGATTTATATTAATTAATATATGAACCTCTCACTCCCCAATAATGTCTCG ATGCACATAATAATTAGCCCTTGTTGCTTAATTATTGACAATAATACGCA GATGCAACAAAATGGGCCAAAACATCATACTCTGTCGTATTTATAGTCTT AGCAGTTTCCCACCTCCTCTGGCAATAGCGGTTACTCCGTAAATTGTGAC GCTCTTGATAGAAGTACTTACAACCAATTATAGTAGCTATTGAGGATACG AAAGCTTTTGCATATTTTGTCGATCCCAGAGGATCTTCCAGCGAACCCGG CGTAGCCCACGGGAAACCTGTGTGCATTCAGTAAATAATCAATGAGAAGC CCAGTCGTGTCAGAGGCAAGATCGCTTGTGAAGGGGTTTCAGGTAGCGGT GTTACTCCCATGGAGCCGTTGAACGGTTAGACCAATGTATTTAACCGGTT TACTGACATTCAGGAAGTACGTGGAGACCGTTGCTGAGTATCGATTGAGT AGTGCCAAGAGGTTATGGAGATGATTGCAAGATCGATGGTTGGTTCCTCC TTTCTGATTCATATGTTCGTGTTGCTCCATCTGATCGCAGTCAGATGATC ATTTCGGAACGGTCTGCACGGGATGCTTTGGTGAATGCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig5224:3826..5516-

>mRNA_H-elongata_contig5224.12527.1 ID=mRNA_H-elongata_contig5224.12527.1|Name=mRNA_H-elongata_contig5224.12527.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at H-elongata_contig5224:3826..5516- (Himanthalia elongata Himel1 dioecious)
ATGTCACTCGACTCACAGGTGTCTTCTTCTGACTTAAACAATTCTTACTC
TGACGATGGCCTTACCATAGTTGTAAACGGTGAGGATTCGGTTGTAACAA
TAAGCGGACCAACAAGATTTTTTAACAACACTTGCAATGGTAAAGGGGGA
GGCATGGCGTTAGTTCAATCGTTAGTCGTAAATTTCAACAGGAAGAACAT
TACATTTTCGGAAAATTCGGCTGGGGTATCTGGCGGAGCAGTATACATCG
AAGGTATCGGGAGTGGGACGAAATTTGAGAATGTGTCTTTCGTTGGAAAC
GTCGCCCAAATCGGTGGCGCAGTGCATGCTACGGGAAGCGGGACCACAGT
GACCATCGACGAAGAAGGCAAGCAAATTCTAAATCCGACGACGTTCGAAG
GTTGTAAATTCATCGACAACTTTGCCTTTACGATGGGTGGAGCAATCTTC
AGCGCTTCTGGCCAAGATTATTTCCTTGATACTCTCTTCGAGGGCAATCA
AGCTAAAGTCGGGGGGGCTTTGAGACTTGCTGGATCGGTTTCCATAAAAA
ATTGTTCATTTTTTGACAACATTTCCGACCTTGATGGGGGACCAGCCGTG
TTCAATATCGGATATATGCCAAGCTTTACAAGAAACACGTTTCGTGGAAA
CGTCTTCAACTGCGATCCGGAGACTTTTCTAAACTTCAACAAGATGTCAC
TCGACTCACAGGTGTCTTCTTCTGACTTAAACAATTCTTACTCTGACGAT
GGCCTTACCATAGTTGTAAACGGTGAGGATTCGGTTGTAACAATAAGCGG
ACCAACAAGATTTTTTAACAACACTTGCAATGGTAAAGGGGGAGGCATGG
CGTTAGTTCAATCGTTAGTCGTAAATTTCAACAGGAAGAACATTACATTT
TCGGAAAATTCGGCTGGGGTATCTGGCGGAGCAGTATACATCGAAGGTAT
CGGGAGTGGGACGAAATTTGAGAATGTGTCTTTCGTTGGAAACGTCGCCC
AAATCGGTGGCGCAGTGCATGCTACGGGAAGCGGGACCACAGTGACCATC
GACGAAGAAGGCAAGCAAATTCTAAATCCGACGACGTTCGAAGGTTGTAA
ATTCATCGACAACTTTGCCTTTACGATGGGTGGAGCAATCTTCAGCGCTT
CTGGCCAAGATTATTTCCTTGATACTCTCTTCGAGGGCAATCAAGCTAAA
GTCGGGGGGGCTTTGAGACTTGCTGGATCGGTTTCCATAAAAAATTGTTC
ATTTTTTGACAACATTTCCGACCTTGATGGGGGACCAGCCGTGTTCAATA
TCGGATATATGCCAAGCTTTACAAGAAACACGTTTCGTGGAAACGTCTTC
AACTGCGATCCGGAGACTTTTCTAAACTTCAACAAGTCAGATGATCATTT
CGGAACGGTCTGCACGGGATGCTTTGGTGAATGCCCCTCAGATGATCATT
TCGGAACGGTCTGCACGGGATGCTTTGGTGAATGCCCC
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