mRNA_H-elongata_contig52226.12525.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52226.12525.1
Unique NamemRNA_H-elongata_contig52226.12525.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52226.12525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52226contigH-elongata_contig52226:465..2178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1149
Cds size408
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52226.12525.1prot_H-elongata_contig52226.12525.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52226 1206..2178 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.4619143-UTR-H-elongata_contig52226:464..12051622930854.4619143-UTR-H-elongata_contig52226:464..1205Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52226 465..1205 +
1691679598.9465954-UTR-H-elongata_contig52226:464..12051691679598.9465954-UTR-H-elongata_contig52226:464..1205Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52226 465..1205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.4796143-CDS-H-elongata_contig52226:1205..14261622930854.4796143-CDS-H-elongata_contig52226:1205..1426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52226 1206..1426 +
1691679598.957205-CDS-H-elongata_contig52226:1205..14261691679598.957205-CDS-H-elongata_contig52226:1205..1426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52226 1206..1426 +
1622930854.499174-CDS-H-elongata_contig52226:1688..18331622930854.499174-CDS-H-elongata_contig52226:1688..1833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52226 1689..1833 +
1691679598.9675248-CDS-H-elongata_contig52226:1688..18331691679598.9675248-CDS-H-elongata_contig52226:1688..1833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52226 1689..1833 +
1622930854.5143888-CDS-H-elongata_contig52226:2136..21781622930854.5143888-CDS-H-elongata_contig52226:2136..2178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52226 2137..2178 +
1691679598.97695-CDS-H-elongata_contig52226:2136..21781691679598.97695-CDS-H-elongata_contig52226:2136..2178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52226 2137..2178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52226.12525.1

>prot_H-elongata_contig52226.12525.1 ID=prot_H-elongata_contig52226.12525.1|Name=mRNA_H-elongata_contig52226.12525.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MEPMKSNAPPPADRSQWTCQTGVNDLRDDALAHLLVNVGEGLEYLRLRDC
PHITDEGIRAVASTCPRLRELDIGTQSYSVNITQQSLVHLSLARCASSLV
YLGLRNLHRIGLHVGLSSIGTQFPGLRRLDLAELDC
back to top

mRNA from alignment at H-elongata_contig52226:465..2178+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52226.12525.1 ID=mRNA_H-elongata_contig52226.12525.1|Name=mRNA_H-elongata_contig52226.12525.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1714bp|location=Sequence derived from alignment at H-elongata_contig52226:465..2178+ (Himanthalia elongata Himel1 dioecious)
ACCTCTCCGGTGCGTGCGACGCTCTTGCTCAGACCCCGCCGCCGTCGCTG
CTGGTCAGCTCGACTTTGTCGCGTCGCCACGTGAGATAAAACTATTAATA
CCTATTGCCGAGCGGTCGTGTGTCGATAACCAAAAGGCCCGCGTCCCGAT
AGCCACATGCAGTTCGTTAAGACCTCTGAGTGTTCTCTTTTTTGTGGGTT
TTTTTTGTTTGTGTTTGGTGGGGGGGGGGGGTTGTTTTGTTTTGTTTTTT
GGAGATGTCGCTTTTCCGAGTATTTGTATTGCACCATTATTGTCGTTTCT
TTTTGTATTGGAGAGTACCTTGAACGTTTTTATCCTTTCCAGATGGCGTG
TTTTTTTTCTACCTTATGACCACGGGCTGGATTTTGAAATCAGCTTATGT
GAGAATTCAATAAATCAAAATCAAAAACCAATATTTTGATGTTTGATCTA
TGAACTAAGGGTATTTTCAAGGTGGGGGGATGAGCGGTCTGAGGAGACAG
TTCGGTGGAGCAAACCCCTGCTACGTTCCTTGTTTGTGCCCTTCGTCGAC
CTATCGCCGTTTTCAAGTTCGTTGTCGCAAACACAAGCCTCCGACGAGCG
CTATGGTAGATTTCTGTCTTGGGCGGGCTTGGGCTTGTTTTGTATGCTAT
ACACTATTGTGGACCCTCTTGCGCCGTGTTGTAGAGTGGTATACGGGCTA
CAAGTTGTGTGTGCCGGAGGTGATAAGCGTAACTCCTCGAGATGGAACCC
ATGAAATCGAACGCACCCCCCCCAGCCGATCGATCGCAATGGACGTGTCA
GACGGGTGTCAATGACCTGCGAGACGACGCGCTGGCGCACTTGCTGGTGA
ATGTTGGAGAGGGCTTGGAGTATCTTCGCCTTCGCGACTGCCCCCATATC
ACGGACGAAGGGATACGCGCCGTGGCCTCCACGTGCCCGAGGCTGAGGGA
GTTGGACATTGGGTACGTGCATGTATGCATGCGCGCGAGTATGTGTGTGT
TCGGCCCAAGACATCGGTGGACTCGAGCCCATGAATAACACAGCATACAT
GCACGCGATCGTAAAAGATGCTTAGGTTCGGCTCTACACAGCTTGTGTGT
TACACGGCGATTGCTGCTCTTCATTGTCCCAGCCGCCTAAACCGTCCCAA
TCGTCCCCCGTTTTTCCGATTCGTCTCTCCCTGCCGAACGCTCTGCTGGC
ACTCTGAAATCGCGGGTGGCTCAGAACCCAGAGTTACAGTGTTAATATCA
CTCAGCAGTCCCTGGTGCACCTATCCTTGGCGCGCTGTGCATCGTCGCTT
GTGTATCTGGGCCTCCGGAATCTACACCGGATTGGGCTCCATGTCGGGCT
TTCCTCCATTGGTACTCAAGTAAGTCCGCATTGACGACTCGGCTGGTGCT
GCAGTCTATTTTTTTATATTGTTTCCCTGAAACCTTCATATGATGAGTAC
TTAAGTATGCAGGCCATATAGTGGTTAATCTCGGGTGCTCTCTACTGTAC
CTATCCAGACGAAGAGGTTACCTCGATCTCTCGTGAATTTCACCCCCCCC
ACCAATATAATCGTTTTCCTGGTTACATCCCACCCGCCTTTGACCTTCAT
ATGTGCCTCTTTCCCCTGTTTGTGACGGGGGGGGTGTGGGGGGGGCGTCT
TGGCGCACGACGTGTGACGCAGTTCCCCGGCCTGAGGAGGCTTGATTTGG
CGGAGCTCGACTGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig52226:465..2178+

>mRNA_H-elongata_contig52226.12525.1 ID=mRNA_H-elongata_contig52226.12525.1|Name=mRNA_H-elongata_contig52226.12525.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig52226:465..2178+ (Himanthalia elongata Himel1 dioecious)
ATGGAACCCATGAAATCGAACGCACCCCCCCCAGCCGATCGATCGCAATG
GACGTGTCAGACGGGTGTCAATGACCTGCGAGACGACGCGCTGGCGCACT
TGCTGGTGAATGTTGGAGAGGGCTTGGAGTATCTTCGCCTTCGCGACTGC
CCCCATATCACGGACGAAGGGATACGCGCCGTGGCCTCCACGTGCCCGAG
GCTGAGGGAGTTGGACATTGGATGGAACCCATGAAATCGAACGCACCCCC
CCCAGCCGATCGATCGCAATGGACGTGTCAGACGGGTGTCAATGACCTGC
GAGACGACGCGCTGGCGCACTTGCTGGTGAATGTTGGAGAGGGCTTGGAG
TATCTTCGCCTTCGCGACTGCCCCCATATCACGGACGAAGGGATACGCGC
CGTGGCCTCCACGTGCCCGAGGCTGAGGGAGTTGGACATTGGAACCCAGA
GTTACAGTGTTAATATCACTCAGCAGTCCCTGGTGCACCTATCCTTGGCG
CGCTGTGCATCGTCGCTTGTGTATCTGGGCCTCCGGAATCTACACCGGAT
TGGGCTCCATGTCGGGCTTTCCTCCATTGGTACTCAAAACCCAGAGTTAC
AGTGTTAATATCACTCAGCAGTCCCTGGTGCACCTATCCTTGGCGCGCTG
TGCATCGTCGCTTGTGTATCTGGGCCTCCGGAATCTACACCGGATTGGGC
TCCATGTCGGGCTTTCCTCCATTGGTACTCAATTCCCCGGCCTGAGGAGG
CTTGATTTGGCGGAGCTCGACTGCTTCCCCGGCCTGAGGAGGCTTGATTT
GGCGGAGCTCGACTGC
back to top