mRNA_H-elongata_contig52222.12524.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52222.12524.1
Unique NamemRNA_H-elongata_contig52222.12524.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52222.12524.1 vs. uniprot
Match: A0A2I0TSC9_LIMLA (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Limosa lapponica baueri TaxID=1758121 RepID=A0A2I0TSC9_LIMLA)

HSP 1 Score: 46.6 bits (109), Expect = 7.960e-5
Identity = 20/35 (57.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 ATSDKFVGAGLLSLSVIIFVYYTLWVIILVRTSPA 105
            + +D+ VG GL++ S+++FVYYTLW+I+LVR SPA
Sbjct:  199 SATDQVVGFGLVAFSLVLFVYYTLWIIVLVRLSPA 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52222.12524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2I0TSC9_LIMLA7.960e-557.14Dolichol phosphate-mannose biosynthesis regulatory... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52222contigH-elongata_contig52222:3810..3914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size105
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.4076397-CDS-H-elongata_contig52222:3809..39141622930854.4076397-CDS-H-elongata_contig52222:3809..3914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52222 3810..3914 +
1691679598.934494-CDS-H-elongata_contig52222:3809..39141691679598.934494-CDS-H-elongata_contig52222:3809..3914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52222 3810..3914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52222.12524.1prot_H-elongata_contig52222.12524.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52222 3810..3914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52222.12524.1

>prot_H-elongata_contig52222.12524.1 ID=prot_H-elongata_contig52222.12524.1|Name=mRNA_H-elongata_contig52222.12524.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
ATSDKFVGAGLLSLSVIIFVYYTLWVIILVRTSPA
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mRNA from alignment at H-elongata_contig52222:3810..3914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52222.12524.1 ID=mRNA_H-elongata_contig52222.12524.1|Name=mRNA_H-elongata_contig52222.12524.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=105bp|location=Sequence derived from alignment at H-elongata_contig52222:3810..3914+ (Himanthalia elongata Himel1 dioecious)
GCCACTAGCGACAAATTCGTGGGTGCAGGGTTGCTGTCGTTGAGCGTCAT
CATCTTCGTGTACTACACGCTATGGGTGATCATATTGGTGAGAACCTCCC
CAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig52222:3810..3914+

>mRNA_H-elongata_contig52222.12524.1 ID=mRNA_H-elongata_contig52222.12524.1|Name=mRNA_H-elongata_contig52222.12524.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig52222:3810..3914+ (Himanthalia elongata Himel1 dioecious)
GCCACTAGCGACAAATTCGTGGGTGCAGGGTTGCTGTCGTTGAGCGTCAT
CATCTTCGTGTACTACACGCTATGGGTGATCATATTGGTGAGAACCTCCC
CAGCAGCCACTAGCGACAAATTCGTGGGTGCAGGGTTGCTGTCGTTGAGC
GTCATCATCTTCGTGTACTACACGCTATGGGTGATCATATTGGTGAGAAC
CTCCCCAGCA
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