mRNA_H-elongata_contig52206.12520.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Match: A0A6H5K2F3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2F3_9PHAE) HSP 1 Score: 244 bits (622), Expect = 1.240e-74 Identity = 105/152 (69.08%), Postives = 126/152 (82.89%), Query Frame = 1
Query: 10 CPYAIHSEREARARAENASIPGNIVKIEHLRFCRTGNHFSTVFQNLALGYCCKSKLVWLPSKDDILAPGVFNEGTPGPRWFDFSTAPDVKGFESVSCMAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPTDVDVC 465
CPY I + EA +R ++ S+PGN+VK+EHL FCRTGNHFS+ F+NLALGYCCKSK+VWLP KDD+LAPGVFN+GTPGPRWFDFS+APDV GF+S +C A ITWAGQRAF M QL++ H + P L+EC+ APRLL CEAAYYFP DVD+C
Sbjct: 94 CPYVIDTAEEAISRIKDKSLPGNVVKVEHLTFCRTGNHFSSFFRNLALGYCCKSKVVWLPPKDDVLAPGVFNQGTPGPRWFDFSSAPDVDGFDSSACSADITWAGQRAFHMHQLDSPEHEFHTPGLKECIARAPRLLACEAAYYFPKDVDLC 245
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI) HSP 1 Score: 227 bits (579), Expect = 1.480e-69 Identity = 112/217 (51.61%), Postives = 140/217 (64.52%), Query Frame = 1
Query: 10 CPYAIHSEREARARAENASIPGNIVKIEHLRFCRTGNHFSTVFQNLALGYCCKSKLVWLPSKDDILAPGVFNEGTPGPRWFDFSTAPDVKGFESVSCMAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPTDVDVCLDKEPKEAAEGPRTLSGGKNEKRMFDYEEEEEESAGNLVLHVRSGDIFENDVLWYYGQVYGDMYI 660
C YAI + + AR + +++I GN+VK+ HL+F RTGN F V++NLALGYCCK+K VWLP KDD+LAPG+FNEGTPGPRWFDFS+APDV G + C I W + A +M L+ + Y P +R+C+ APRLLGCEAAYYFP D+ VC K+ A G R GG AGNLVLHVRSGDIF + V+ Y GQ Y+
Sbjct: 59 CTYAIPNAKVARKQRHDSTIEGNVVKVTHLQFGRTGNRFMAVYRNLALGYCCKAKQVWLPPKDDVLAPGIFNEGTPGPRWFDFSSAPDVDGVDLGRCPIDIIWENRGAMQMAGLDNPERNKYLPHIRDCMAKAPRLLGCEAAYYFPQDIAVCPRKKKPFLALGDRNPPGG----------------AGNLVLHVRSGDIFFDRVVPYKGQPPLQFYL 259
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Match: D7G2M2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI) HSP 1 Score: 221 bits (564), Expect = 4.160e-66 Identity = 113/228 (49.56%), Postives = 141/228 (61.84%), Query Frame = 1
Query: 1 NKKCPYAIHSEREARARAENASIPGNIVKIEHLRFCRTGNHFSTVFQNLALGYCCKSKLVWLPSKDDILAPGVFNEGTPGPRWFDFSTAPDVKGFESVSCMAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPTDVDVCL-------DKEPKEAAEGPRTLSGGKNEKRMFDYEEEEEESAGNLVLHVRSGDIFENDVLWYYGQVYGDMYIR 663
N CPY + + E R R + +IPGN++ I RF R GN F + NL LGYCCKSKLV LP+KDD LAPG+F EGTPGPRW+DF+ APDV+GF++ SC A ITW G+ AF + L+ H +Y+P L CV+ PRL GCEAAY+FP VDVCL D ++ G SG +K + EEEE A LV+HVRSGDIF + YGQ Y+R
Sbjct: 121 NPDCPYILRTPGE-RLRMRDPAIPGNVLTINDFRFGRLGNRFWALGVNLKLGYCCKSKLVSLPAKDDTLAPGIFGEGTPGPRWYDFTNAPDVEGFDASSCPADITWGGREAFHLLGLDNPSHPYYSPNLSTCVETVPRLTGCEAAYFFPMGVDVCLSDRTATGDVVHEQRGNGASGRSGPGVKKNLVGSEEEEGRPANTLVIHVRSGDIFVDPAAPGYGQPPLQYYVR 347
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Match: A0A6H5K7B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE) HSP 1 Score: 209 bits (532), Expect = 3.960e-61 Identity = 109/231 (47.19%), Postives = 139/231 (60.17%), Query Frame = 1
Query: 10 CPYAIHSEREARARAENASIPGNIVKIEHLRFCRTGNHFSTVFQNLALGYCCKSKLVWLPSKDDILAPGVFNEGTPGPRWFDFSTAPDVKGFESVSCMAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPTD--VDVC-----------------LDKEPKEAAEGPRTLSGGKNEKR------------MFDYEEEEEESAGNLVLHVRSGDIF 609
CPYAI SE EAR R+ N S PGN+V + +CR GN F+++ ++L+LGYCCKS+L+ LP KD+ LAPG FNEG PGPR FDFS+APDV+GF+ SC ITW G AF + L GH +Y P L EC+K PR+ GCEAAY+FP D VD+C + ++P++ A G R G + + R E SAGNLV+HVRSGDIF
Sbjct: 147 CPYAIPSEEEARERSGNTSAPGNVVVVTDFNYCRLGNRFTSMSRSLSLGYCCKSRLLSLPPKDEQLAPGRFNEGIPGPRNFDFSSAPDVEGFDYSSCPPEITWGGTNAFHLQGLRDEGHPYYTPELFECIKELPRIAGCEAAYFFPKDMAVDMCPLDETAERDHNNSNVRDVSEKPRDDAPGVRLDWGERGQGREATXXXXXXXXXXXXXXXXXEGSAGNLVVHVRSGDIF 377
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Match: D7G1L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI) HSP 1 Score: 202 bits (515), Expect = 1.140e-58 Identity = 111/246 (45.12%), Postives = 146/246 (59.35%), Query Frame = 1
Query: 10 CPYAIHSEREARARAE------NASIPGNIVKIEHLRFCRTGNHFSTVFQNLALGYCCKSKLVWLPSKDDILAPGVFNEGTPGPRWFDFSTAPDVKGFESVSCMAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPTDVDVCL----------DKEPKEAAEGPRTLSGGKNEKRMFDYEE-----EEEE-------------SAGNLVLHVRSGDIFENDVLWYYGQVY 645
CPYAI +E E R++ N S PGN+V + +CR GN F ++ ++L+LGYCCKS+LV LP KDD LAPG FN+GTPGPR FDFS+APDV+GF+S SC I W G +AF ++ L GH +Y P L C+K P ++GCEAAY+FPTD+ V + +K ++ +E P+ + G D+EE E E SAGNLV+HVRSGDIF + YGQ Y
Sbjct: 146 CPYAILAEEEGHERSDRGGDGGNTSAPGNVVVVTDFNYCRLGNRFLSMGRSLSLGYCCKSRLVSLPPKDDQLAPGRFNDGTPGPRNFDFSSAPDVEGFDSSSCPPEIKWGGTQAFHLEGLRDEGHPYYTPGLFTCIKELPWIIGCEAAYFFPTDMAVPMCPLDETAEGGNKNVRDISEKPKDDAPGI----QLDWEESGHGREATEQXXXXXXXXXXXGSAGNLVMHVRSGDIFVSPAHPGYGQYY 387
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 4.670e-14 Identity = 67/211 (31.75%), Postives = 92/211 (43.60%), Query Frame = 1
Query: 10 CPYAIHSEREARARAENASIPGNIVKIEHLRFCRTGNHFSTVFQNLALGYCCKSKLVWLPSKDDILAPGVFNEG--TPGPRWFDFS-TAPDVKGFESVS-----CMAHITWAGQRAFRMDQLNTAGHSHYNPILRECVKAAPRLLGCEAAYYFPTDVDV---CLDKEPKEAAEGPRTLSGGKNEKRMFDYEEEEEESAGNLVLHVRSGDIF 609
CP A+ S +A A + + N + + R+GNHF + LA+G+CC+S+L+ LP D + PG G G RWFDFS P GFE + C + AF G+ H + L C+ L GCE AY VD+ C +EP GK + AG+LV+H+RSGDIF
Sbjct: 89 CPQAL-SRSQAEAALDGGNSTSNTITLLSFGSGRSGNHFLMISSYLAMGFCCRSRLLTLPEVDTAM-PGDDEGGGFKAGERWFDFSRVTPPWPGFEQLGDNPEVCRPQMEDGADNAF--------GYEHIHSRLLRCMNRV-YLRGCEKAYLGKM-VDLEGFCPKQEP------------GKRK------------GAGSLVVHIRSGDIF 263 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52206.12520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52206.12520.1 >prot_H-elongata_contig52206.12520.1 ID=prot_H-elongata_contig52206.12520.1|Name=mRNA_H-elongata_contig52206.12520.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp NKKCPYAIHSEREARARAENASIPGNIVKIEHLRFCRTGNHFSTVFQNLAback to top mRNA from alignment at H-elongata_contig52206:2528..3733+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52206.12520.1 ID=mRNA_H-elongata_contig52206.12520.1|Name=mRNA_H-elongata_contig52206.12520.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1206bp|location=Sequence derived from alignment at H-elongata_contig52206:2528..3733+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52206:2528..3733+ >mRNA_H-elongata_contig52206.12520.1 ID=mRNA_H-elongata_contig52206.12520.1|Name=mRNA_H-elongata_contig52206.12520.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig52206:2528..3733+ (Himanthalia elongata Himel1 dioecious)back to top |