mRNA_H-elongata_contig52205.12519.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52205.12519.1
Unique NamemRNA_H-elongata_contig52205.12519.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52205.12519.1 vs. uniprot
Match: A0A6H5KF29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF29_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.480e-18
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:    1 RQGTMKRIQHQD-ICSHEGCDRETEVGPMSRPGEVDLFCSDHHNPAIIVTRTEHCQFFGC----GK--------TPKYGQRQGLLSFCQLHKRAGMYTNRNGQLLVAT 285
            R+  M R+QH    C  +GC+ E +V  M R G +  FC+ H  P +++ +   C+ F C    GK        TP+YG   G L+FC+ HKRAGMYT R+G L VAT
Sbjct:   58 RKDGMLRVQHDHKTCGADGCNGEADVHYMGRDGRIHRFCARHKEPVVVLEQAVQCEVFHCCGFDGKDMHGECDGTPRYGGHDGPLTFCRAHKRAGMYTTRDGMLYVAT 165
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BLAST of mRNA_H-elongata_contig52205.12519.1 vs. uniprot
Match: D8LH38_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH38_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.910e-16
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   55 CDRETEVGPMSRPGEVDLFCSDHHNPAIIVTRTEHCQFFGCGKTPKYGQRQGLLSFCQLHKRAGMYTNRNGQLLVAT 285
            C  E +V  M R G +  FC+ H  P +++ +   CQ   C  TP+YG   G L+FC+ HKRAGMYT R+G L VAT
Sbjct:   47 CTEEADVHYMGRDGRIHRFCTRHKEPVVVLEQAVQCQHGECDGTPRYGGHDGPLTFCRAHKRAGMYTTRDGVLYVAT 123
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BLAST of mRNA_H-elongata_contig52205.12519.1 vs. uniprot
Match: A0A6H5JZ47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ47_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.230e-14
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   70 EVGPMSRPGEVDLFCSDHHNPAIIVT---RTEHCQFFGCGKTPKYGQRQGLLSFCQLHKRAGMYTNRNGQLLVAT 285
            E    S+ G +   C +   PA  V    R + C++ GC  TP+YG R GL SFCQ HKRAGMYT R+G+L +AT
Sbjct:   71 EDNQTSQDGLIHRVCVEDKGPAQSVATMRRAQRCEYAGCDGTPRYGPRNGLQSFCQGHKRAGMYTYRSGELFMAT 145
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BLAST of mRNA_H-elongata_contig52205.12519.1 vs. uniprot
Match: D7G084_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G084_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 6.310e-13
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   55 CDRETEVGPMSRPGEVDLFCSDHHNPAIIVTRTEHCQFFGCGKTPKYGQRQGLLSFCQLHKRAGMYTNRNGQLLVAT 285
            C+R  E   + + G V            + +RTE+C+  GC +TP+YG++ G L+ CQ HKRAG+YT R+G LLVAT
Sbjct:  149 CERGVEESRLPQDGGVISPPRTEDKKPAVASRTEYCKHTGCTRTPRYGRKNGPLTLCQSHKRAGLYTVRDGVLLVAT 225
[Close]
BLAST of mRNA_H-elongata_contig52205.12519.1 vs. uniprot
Match: A0A6H5KL62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL62_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.560e-11
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:   52 GCDRETEVGPMSRPGEVDLFCSDHHNPAIIVTRTEHCQFFGCGKTPKYGQRQGLLSFCQLHKRAGMYTNRNGQLLVAT 285
            GC+R  E   + + G V            + +RTE+C+  GC +  +YG++ G L  CQ HKRAG+YT R+G LLVAT
Sbjct:  141 GCERGVEENRLVQDGGVISPPRTEDKKLAVTSRTEYCKHAGCFRALRYGRKNGPLMLCQSHKRAGLYTVRDGVLLVAT 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52205.12519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KF29_9PHAE2.480e-1840.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH38_ECTSI1.910e-1645.45EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JZ47_9PHAE3.230e-1446.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G084_ECTSI6.310e-1342.86Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KL62_9PHAE1.560e-1141.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52205contigH-elongata_contig52205:2689..3453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size287
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52205.12519.1prot_H-elongata_contig52205.12519.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52205 2689..3441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930853.9164803-CDS-H-elongata_contig52205:2688..28081622930853.9164803-CDS-H-elongata_contig52205:2688..2808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52205 2689..2808 -
1691679598.734255-CDS-H-elongata_contig52205:2688..28081691679598.734255-CDS-H-elongata_contig52205:2688..2808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52205 2689..2808 -
1622930853.932212-CDS-H-elongata_contig52205:2982..30941622930853.932212-CDS-H-elongata_contig52205:2982..3094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52205 2983..3094 -
1691679598.7445242-CDS-H-elongata_contig52205:2982..30941691679598.7445242-CDS-H-elongata_contig52205:2982..3094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52205 2983..3094 -
1622930853.945895-CDS-H-elongata_contig52205:3400..34411622930853.945895-CDS-H-elongata_contig52205:3400..3441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52205 3401..3441 -
1691679598.7601194-CDS-H-elongata_contig52205:3400..34411691679598.7601194-CDS-H-elongata_contig52205:3400..3441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52205 3401..3441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930853.9628818-UTR-H-elongata_contig52205:3441..34531622930853.9628818-UTR-H-elongata_contig52205:3441..3453Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52205 3442..3453 -
1691679598.7759817-UTR-H-elongata_contig52205:3441..34531691679598.7759817-UTR-H-elongata_contig52205:3441..3453Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52205 3442..3453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52205.12519.1

>prot_H-elongata_contig52205.12519.1 ID=prot_H-elongata_contig52205.12519.1|Name=mRNA_H-elongata_contig52205.12519.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MKRIQHQDICSHEGCDRETEVGPMSRPGEVDLFCSDHHNPAIIVTRTEHC
QFFGCGKTPKYGQRQGLLSFCQLHKRAGMYTNRNGQLLVAT
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mRNA from alignment at H-elongata_contig52205:2689..3453-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52205.12519.1 ID=mRNA_H-elongata_contig52205.12519.1|Name=mRNA_H-elongata_contig52205.12519.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=765bp|location=Sequence derived from alignment at H-elongata_contig52205:2689..3453- (Himanthalia elongata Himel1 dioecious)
CGGCAAGGCACCATGAAGCGTATTCAGCATCAAGACATATGCAGCCACGA
AGGGTGAGCGAGAAGATATCTCCACCCTTCAGGTGCCAAGACACACGCTC
GATGTAGTGGCAGAGCCCTGCCGCCTGCGCTTCAAACGCCGCAGAGCAAA
ACTCCGCTTCTGATGGTGAACTATGTCCATATTTGGCGTACATGGGCGTG
AATACCGAGACTATTACTCGTTGAGAGGTGTCGGTGAGAAAAAAATCGTA
ACGAAAACTGAAAACGAGTGGTTCTGCTGACACGATGCGTCCCAATATCT
GCGCTCGTCCTGTAATGCCCGTTCGCTACACCCTTGCCCGAACCGCCATA
TTGCCGTAGGTGCGATCGGGAAACAGAGGTAGGCCCCATGTCGCGGCCCG
GCGAGGTGGACCTGTTCTGCTCGGACCACCACAACCCGGCCATCATCGTC
ACCAGGACTGAACACTGCCAGGCGAGGGCGGGTCGTGCTCCGCGTAGCGG
TGATACACAATATTTTTCTGTCTCTGTCTTAGGTGTCTCATAGTCTGTTC
AACTCCCTCCCCGTTACGCCGACAATTCAACGTTTCCCAATCCTCTTGTG
CACCGAACGGCTTCGGCTTCGATCACTTTGATATGTACGCGGCAGTTCTT
CGGGTGCGGGAAGACTCCCAAATACGGCCAACGGCAGGGTCTCCTGAGCT
TTTGCCAGCTGCACAAAAGGGCCGGAATGTACACCAACCGTAATGGTCAA
CTCCTGGTCGCCACC
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Coding sequence (CDS) from alignment at H-elongata_contig52205:2689..3453-

>mRNA_H-elongata_contig52205.12519.1 ID=mRNA_H-elongata_contig52205.12519.1|Name=mRNA_H-elongata_contig52205.12519.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig52205:2689..3453- (Himanthalia elongata Himel1 dioecious)
ATGAAGCGTATTCAGCATCAAGACATATGCAGCCACGAAGGATGAAGCGT
ATTCAGCATCAAGACATATGCAGCCACGAAGGGTGCGATCGGGAAACAGA
GGTAGGCCCCATGTCGCGGCCCGGCGAGGTGGACCTGTTCTGCTCGGACC
ACCACAACCCGGCCATCATCGTCACCAGGACTGAACACTGCCAGGTGCGA
TCGGGAAACAGAGGTAGGCCCCATGTCGCGGCCCGGCGAGGTGGACCTGT
TCTGCTCGGACCACCACAACCCGGCCATCATCGTCACCAGGACTGAACAC
TGCCAGTTCTTCGGGTGCGGGAAGACTCCCAAATACGGCCAACGGCAGGG
TCTCCTGAGCTTTTGCCAGCTGCACAAAAGGGCCGGAATGTACACCAACC
GTAATGGTCAACTCCTGGTCGCCACCTTCTTCGGGTGCGGGAAGACTCCC
AAATACGGCCAACGGCAGGGTCTCCTGAGCTTTTGCCAGCTGCACAAAAG
GGCCGGAATGTACACCAACCGTAATGGTCAACTCCTGGTCGCCACC
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