mRNA_H-elongata_contig52173.12508.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52173.12508.1
Unique NamemRNA_H-elongata_contig52173.12508.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52173.12508.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 9.100e-31
Identity = 68/101 (67.33%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    1 LAPLGVPPPRGSAGRSTGSFQVRNVSDETVSVTLRASPVPEMASVLSLGAYLQLQDSSNGIYAPAGAAGRPSPSVALLPGDTLDVHAECLVQPGACLTAEL 303
            LAPL +PP RG+AGR  GSFQ++NVS ETVSV L   P PE+A VLSLGA +Q QDSS G+YA  GA GR SP+VALLPGD LDV AECL  PGA L  EL
Sbjct: 3758 LAPLAIPPLRGAAGRCAGSFQLKNVSGETVSVMLGVMPAPEVAGVLSLGASMQ-QDSSAGVYASVGADGRSSPAVALLPGDVLDVQAECLALPGARLPPEL 3857
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BLAST of mRNA_H-elongata_contig52173.12508.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.690e-30
Identity = 67/101 (66.34%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 LAPLGVPPPRGSAGRSTGSFQVRNVSDETVSVTLRASPVPEMASVLSLGAYLQLQDSSNGIYAPAGAAGRPSPSVALLPGDTLDVHAECLVQPGACLTAEL 303
            LAPL +PP RG+AGR  GSFQ++NVS ETVSV L  +P PE+  VLSLGA +Q QDSS G+YA  GA GR SP VALLPGD LDV AECL  PGA L  EL
Sbjct: 2023 LAPLAIPPLRGAAGRCAGSFQLKNVSGETVSVMLGVTPAPEVVGVLSLGASMQ-QDSSTGVYASVGADGRSSPPVALLPGDVLDVQAECLALPGARLPPEL 2122
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52173.12508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHH6_ECTSI9.100e-3167.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWQ8_9PHAE1.690e-3066.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52173contigH-elongata_contig52173:1710..2012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue7.9e-27
Seed eggNOG ortholog2880.D8LHH6
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.7789857-CDS-H-elongata_contig52173:1709..20121622930852.7789857-CDS-H-elongata_contig52173:1709..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52173 1710..2012 -
1691679598.2213566-CDS-H-elongata_contig52173:1709..20121691679598.2213566-CDS-H-elongata_contig52173:1709..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52173 1710..2012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52173.12508.1prot_H-elongata_contig52173.12508.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52173 1710..2012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52173.12508.1

>prot_H-elongata_contig52173.12508.1 ID=prot_H-elongata_contig52173.12508.1|Name=mRNA_H-elongata_contig52173.12508.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
LAPLGVPPPRGSAGRSTGSFQVRNVSDETVSVTLRASPVPEMASVLSLGA
YLQLQDSSNGIYAPAGAAGRPSPSVALLPGDTLDVHAECLVQPGACLTAE
L
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mRNA from alignment at H-elongata_contig52173:1710..2012-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52173.12508.1 ID=mRNA_H-elongata_contig52173.12508.1|Name=mRNA_H-elongata_contig52173.12508.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig52173:1710..2012- (Himanthalia elongata Himel1 dioecious)
CTTGCACCTCTCGGAGTTCCCCCGCCGCGGGGCTCCGCGGGGCGCTCTAC
GGGATCGTTCCAAGTCAGGAATGTCTCGGACGAGACTGTTTCCGTCACGC
TTCGAGCGTCCCCGGTCCCGGAGATGGCAAGCGTCCTCTCGCTTGGAGCG
TACTTACAGCTGCAGGATTCTTCGAACGGCATATATGCCCCGGCGGGCGC
TGCCGGTCGTCCGTCCCCGAGCGTGGCATTGCTCCCCGGAGATACGCTCG
ATGTCCACGCGGAATGCCTGGTACAACCAGGGGCCTGTCTGACAGCGGAA
CTC
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Coding sequence (CDS) from alignment at H-elongata_contig52173:1710..2012-

>mRNA_H-elongata_contig52173.12508.1 ID=mRNA_H-elongata_contig52173.12508.1|Name=mRNA_H-elongata_contig52173.12508.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig52173:1710..2012- (Himanthalia elongata Himel1 dioecious)
CTTGCACCTCTCGGAGTTCCCCCGCCGCGGGGCTCCGCGGGGCGCTCTAC
GGGATCGTTCCAAGTCAGGAATGTCTCGGACGAGACTGTTTCCGTCACGC
TTCGAGCGTCCCCGGTCCCGGAGATGGCAAGCGTCCTCTCGCTTGGAGCG
TACTTACAGCTGCAGGATTCTTCGAACGGCATATATGCCCCGGCGGGCGC
TGCCGGTCGTCCGTCCCCGAGCGTGGCATTGCTCCCCGGAGATACGCTCG
ATGTCCACGCGGAATGCCTGGTACAACCAGGGGCCTGTCTGACAGCGGAA
CTCCTTGCACCTCTCGGAGTTCCCCCGCCGCGGGGCTCCGCGGGGCGCTC
TACGGGATCGTTCCAAGTCAGGAATGTCTCGGACGAGACTGTTTCCGTCA
CGCTTCGAGCGTCCCCGGTCCCGGAGATGGCAAGCGTCCTCTCGCTTGGA
GCGTACTTACAGCTGCAGGATTCTTCGAACGGCATATATGCCCCGGCGGG
CGCTGCCGGTCGTCCGTCCCCGAGCGTGGCATTGCTCCCCGGAGATACGC
TCGATGTCCACGCGGAATGCCTGGTACAACCAGGGGCCTGTCTGACAGCG
GAACTC
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