mRNA_H-elongata_contig52154.12504.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52154.12504.1
Unique NamemRNA_H-elongata_contig52154.12504.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52154.12504.1 vs. uniprot
Match: A0A6H5JZ96_9PHAE (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ96_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 6.370e-39
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 1
Query:   10 EQELTGLPMWTPSQGGDYISRSFVAKDFVAAMAFLNRVAEVAEAQGHHPDLHVTKYRNVEIRLYTHSMGGTNSSEGVSAAKLLDQLPVEYSSKWLKEH-PEAAAAP 324
            E+EL  LP+WT +  GD+I RSFVAK+FV+AMAFLN VA VAE QGHHPDLH+T+YRNVEIRL THSMGG   ++ ++ A+L DQL V YS KW +E+ P++A  P
Sbjct:   32 EKELASLPLWTSTPNGDFIVRSFVAKNFVSAMAFLNEVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTQND-IAEARLFDQLSVTYSPKWQRENLPDSATPP 136          
BLAST of mRNA_H-elongata_contig52154.12504.1 vs. uniprot
Match: D7G856_ECTSI (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G856_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 2.160e-38
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1
Query:   10 EQELTGLPMWTPSQGGDYISRSFVAKDFVAAMAFLNRVAEVAEAQGHHPDLHVTKYRNVEIRLYTHSMGGTNSSEGVSAAKLLDQLPVEYSSKWLKEH-PEAAAAP 324
            E+EL  LP+WT +  GD+I RSFVAK+FV+AMAFLN VA VAE QGHHPDLH+T+YRNVEIRL THSMGG   ++ ++ A+L DQLPV YS KW +E+ P++A  P
Sbjct:  180 EKELASLPLWTSTPNGDFIIRSFVAKNFVSAMAFLNEVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTQND-IAEARLFDQLPVTYSPKWQRENLPDSATPP 284          
BLAST of mRNA_H-elongata_contig52154.12504.1 vs. uniprot
Match: K8Z8Y7_NANGC (4a-hydroxytetrahydrobiopterin dehydratase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z8Y7_NANGC)

HSP 1 Score: 117 bits (293), Expect = 3.820e-31
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   19 LTGLPMWTPSQGGDYISRSFVAKDFVAAMAFLNRVAEVAEAQGHHPDLHVTKYRNVEIRLYTHSMGGTNSSEGVSAAKLLDQLPVEYSSKWLKEHPEA 312
            L  LP+W  S+    +SRSF AK+F AA+AF++ V  VAE +GHHPDLH+T YR VE+ LYTH++GG   ++ + AA L+D +P  YS KWLKEHPEA
Sbjct:   76 LPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAA-LIDTIPASYSPKWLKEHPEA 172          
BLAST of mRNA_H-elongata_contig52154.12504.1 vs. uniprot
Match: A0A6U0TCE5_9STRA (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TCE5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.030e-30
Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   13 QELTGLPMWTPSQGGDYISRSFVAKDFVAAMAFLNRVAEVAEAQGHHPDLHVTKYRNVEIRLYTHSMGGTNSSEGVSAAKLLDQLPVEYSSKWLKEHPEAAA 318
            Q++ G P+W+ ++ G  + RSFVAK+F AA+ F+N V  +AE +GHHPDLH+T YR V +++YTHS+ G   ++ V A+ L+D LPV YS KWL+EHPEA A
Sbjct:   86 QKIQGRPLWSVTEEGR-LERSFVAKNFQAALDFVNAVGVIAEREGHHPDLHITSYRTVTVQMYTHSLNGLTENDFVMAS-LIDALPVTYSPKWLREHPEAKA 185          
BLAST of mRNA_H-elongata_contig52154.12504.1 vs. uniprot
Match: A0A7S1N220_9EUGL (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N220_9EUGL)

HSP 1 Score: 113 bits (283), Expect = 8.450e-30
Identity = 53/94 (56.38%), Postives = 71/94 (75.53%), Query Frame = 1
Query:   28 LPMWTPSQGGDYISRSFVAKDFVAAMAFLNRVAEVAEAQGHHPDLHVTKYRNVEIRLYTHSMGGTNSSEGVSAAKLLDQLPVEYSSKWLKEHPE 309
            +P+W  S  GD ISRSFVAK+FV AMA+L +V E+AEA+GHHPDLH+T+YR V I +++HS+ G   ++ + AAK+ D + VEYS KWLK  PE
Sbjct:   57 VPLWQLSAAGDRISRSFVAKNFVVAMAYLQQVGEIAEAEGHHPDLHLTEYRTVTIEVFSHSVKGLTPNDFILAAKI-DMVEVEYSPKWLKGQPE 149          
BLAST of mRNA_H-elongata_contig52154.12504.1 vs. uniprot
Match: A0A6U3RQ02_9STRA (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3RQ02_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.990e-30
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   10 EQELTGLPMWTPSQGGDYISRSFVAKDFVAAMAFLNRVAEVAEAQGHHPDLHVTKYRNVEIRLYTHSMGGTNSSEGVSAAKLLDQLPVEYSSKWLKEHPEA 312
            ++ L  LP+W  S+ G  ISR FVAK+F AA+ ++N    +AE  GHHPDLH+T+YRNV + L+THS+GG   ++ + A +L    PV+YS KWLKEHPEA
Sbjct:   73 KRRLGNLPLWKLSEDGTKISRGFVAKNFQAALDWINTAGHIAELNGHHPDLHITQYRNVCVTLWTHSVGGLTENDFLLAEQLDTVAPVKYSPKWLKEHPEA 173          
BLAST of mRNA_H-elongata_contig52154.12504.1 vs. uniprot
Match: A0A812W6D9_9DINO (4a-hydroxytetrahydrobiopterin dehydratase (Fragment) n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812W6D9_9DINO)

HSP 1 Score: 115 bits (288), Expect = 1.210e-29
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 1
Query:   28 LPMWTPSQGGDYISRSFVAKDFVAAMAFLNRVAEVAEAQGHHPDLHVTKYRNVEIRLYTHSMGGTNSSEGVSAAKLLDQLPVEYSSKWLKEHPEA 312
            LP+W  S  G  ISR FVAK++ AAM+FLN V+ +AE +GHHPD+H+T YRNV + L TH++GG +  + V AAK+ DQ+ VEYS KWLKEHP A
Sbjct:  153 LPLWALSPDGASISRCFVAKNWAAAMSFLNEVSVLAEQEGHHPDVHITSYRNVRVELSTHAIGGLSLPDFVLAAKM-DQIKVEYSPKWLKEHPVA 246          
BLAST of mRNA_H-elongata_contig52154.12504.1 vs. uniprot
Match: A0A812N154_SYMPI (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812N154_SYMPI)

HSP 1 Score: 112 bits (281), Expect = 7.140e-29
Identity = 53/97 (54.64%), Postives = 72/97 (74.23%), Query Frame = 1
Query:   13 QELTGLPMWTPSQGGDYISRSFVAKDFVAAMAFLNRVAEVAEAQGHHPDLHVTKYRNVEIRLYTHSMGGTNSSEGVSAAKLLDQLPVEYSSKWLKEH 303
            + ++ LP WT S  G  ISR FVAK++ AAM FLN V+ +AE++GHHPD+H+T YRNV + L TH++GG +  + V AAK+ D++ VEYS KWLKEH
Sbjct:  120 ERISSLPNWTLSPDGASISRCFVAKNWAAAMNFLNEVSTLAESEGHHPDVHITSYRNVRVDLSTHAIGGLSLPDFVLAAKV-DEIKVEYSPKWLKEH 215          
BLAST of mRNA_H-elongata_contig52154.12504.1 vs. uniprot
Match: A0A1Q9CAK9_SYMMI (4a-hydroxytetrahydrobiopterin dehydratase n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CAK9_SYMMI)

HSP 1 Score: 115 bits (288), Expect = 2.190e-28
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 1
Query:   28 LPMWTPSQGGDYISRSFVAKDFVAAMAFLNRVAEVAEAQGHHPDLHVTKYRNVEIRLYTHSMGGTNSSEGVSAAKLLDQLPVEYSSKWLKEHPEA 312
            LP+W  S  G  ISR FVAK++ AAM+FLN V+ +AE +GHHPD+H+T YRNV + L TH++GG +  + V AAK+ DQ+ VEYS KWLKEHP A
Sbjct:  314 LPLWVLSPDGASISRCFVAKNWAAAMSFLNEVSVLAEQEGHHPDVHITSYRNVRVELSTHAIGGLSLPDFVLAAKM-DQIKVEYSPKWLKEHPVA 407          
BLAST of mRNA_H-elongata_contig52154.12504.1 vs. uniprot
Match: A0A812ZGB6_9DINO (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812ZGB6_9DINO)

HSP 1 Score: 114 bits (286), Expect = 7.510e-28
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 1
Query:   19 LTGLPMWTPSQGGDYISRSFVAKDFVAAMAFLNRVAEVAEAQGHHPDLHVTKYRNVEIRLYTHSMGGTNSSEGVSAAKLLDQLPVEYSSKWLKEHP 306
            +  LP+W  S  G  ISRSFVAK++ AAM+FLN V+ +AE +GHHPD+H+T YR+V + L TH++GG +  + V AAK+ DQ+ VEYS KWLKEHP
Sbjct:  363 IPSLPLWVLSPDGASISRSFVAKNWAAAMSFLNEVSVLAEQEGHHPDVHITSYRHVRVDLSTHAIGGLSLPDFVLAAKM-DQIKVEYSPKWLKEHP 457          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52154.12504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ96_9PHAE6.370e-3962.264a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
D7G856_ECTSI2.160e-3863.214a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
K8Z8Y7_NANGC3.820e-3155.104a-hydroxytetrahydrobiopterin dehydratase n=2 Tax=... [more]
A0A6U0TCE5_9STRA4.030e-3051.964a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A7S1N220_9EUGL8.450e-3056.384a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A6U3RQ02_9STRA8.990e-3051.494a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A812W6D9_9DINO1.210e-2957.894a-hydroxytetrahydrobiopterin dehydratase (Fragmen... [more]
A0A812N154_SYMPI7.140e-2954.644a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A1Q9CAK9_SYMMI2.190e-2857.894a-hydroxytetrahydrobiopterin dehydratase n=3 Tax=... [more]
A0A812ZGB6_9DINO7.510e-2856.254a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52154contigH-elongata_contig52154:462..1046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.3e-30
Seed eggNOG ortholog2880.D7G856
KEGG rclassRC01208
KEGG koko:K01724
KEGG ReactionR04734
KEGG Pathwayko00790,map00790
EggNOG free text desc.4-alpha-hydroxytetrahydrobiopterin dehydratase activity
EggNOG OGsCOG2154@1,KOG4073@2759
EC4.2.1.96
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.5257335-CDS-H-elongata_contig52154:461..7071622930852.5257335-CDS-H-elongata_contig52154:461..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52154 462..707 +
1691679598.1403058-CDS-H-elongata_contig52154:461..7071691679598.1403058-CDS-H-elongata_contig52154:461..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52154 462..707 +
1622930852.542839-CDS-H-elongata_contig52154:965..10461622930852.542839-CDS-H-elongata_contig52154:965..1046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52154 966..1046 +
1691679598.1507638-CDS-H-elongata_contig52154:965..10461691679598.1507638-CDS-H-elongata_contig52154:965..1046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52154 966..1046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52154.12504.1prot_H-elongata_contig52154.12504.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52154 462..1046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52154.12504.1

>prot_H-elongata_contig52154.12504.1 ID=prot_H-elongata_contig52154.12504.1|Name=mRNA_H-elongata_contig52154.12504.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
SKPEQELTGLPMWTPSQGGDYISRSFVAKDFVAAMAFLNRVAEVAEAQGH
HPDLHVTKYRNVEIRLYTHSMGGTNSSEGVSAAKLLDQLPVEYSSKWLKE
HPEAAAAP*
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mRNA from alignment at H-elongata_contig52154:462..1046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52154.12504.1 ID=mRNA_H-elongata_contig52154.12504.1|Name=mRNA_H-elongata_contig52154.12504.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=585bp|location=Sequence derived from alignment at H-elongata_contig52154:462..1046+ (Himanthalia elongata Himel1 dioecious)
TCGAAACCCGAACAGGAGCTAACAGGGTTGCCAATGTGGACACCTTCCCA AGGTGGAGACTACATCTCGAGATCCTTCGTTGCGAAGGATTTCGTTGCGG CCATGGCGTTCCTGAATCGTGTGGCGGAAGTCGCGGAGGCGCAGGGTCAC CATCCCGATCTCCACGTCACGAAGTACCGCAACGTCGAGATACGCCTCTA CACACATTCGATGGGAGGTACGAACAGCTCCGAGGGAGTGTCAGCAGTGT GTTTAGGTACACTCGACATCCACAGGGCTCCGTCACCGCGACTCTCTTGC CGTTAGGCCGCGAGGTATGCAACGCACGACCTTGATTTCGCTCTCACTCA CTACCAAAACCTCCGGGTCCATCTCTTTCCTCGATTCTGACTCATGGACT GACAAAGTAAAAAACAACGCACATCTACCCCGCCACGGTGGCCGTGCCCC ACCCTGTGCCTCCGATTCTGCTGCGCAGGCGTGACCGGCAACGACGTCCT TGAGGCCAAGCTTTTGGATCAGCTGCCGGTGGAGTACTCATCCAAGTGGT TGAAAGAGCACCCCGAGGCGGCTGCGGCACCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig52154:462..1046+

>mRNA_H-elongata_contig52154.12504.1 ID=mRNA_H-elongata_contig52154.12504.1|Name=mRNA_H-elongata_contig52154.12504.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig52154:462..1046+ (Himanthalia elongata Himel1 dioecious)
TCGAAACCCGAACAGGAGCTAACAGGGTTGCCAATGTGGACACCTTCCCA
AGGTGGAGACTACATCTCGAGATCCTTCGTTGCGAAGGATTTCGTTGCGG
CCATGGCGTTCCTGAATCGTGTGGCGGAAGTCGCGGAGGCGCAGGGTCAC
CATCCCGATCTCCACGTCACGAAGTACCGCAACGTCGAGATACGCCTCTA
CACACATTCGATGGGAGGTACGAACAGCTCCGAGGGAGTGTCAGCATCGA
AACCCGAACAGGAGCTAACAGGGTTGCCAATGTGGACACCTTCCCAAGGT
GGAGACTACATCTCGAGATCCTTCGTTGCGAAGGATTTCGTTGCGGCCAT
GGCGTTCCTGAATCGTGTGGCGGAAGTCGCGGAGGCGCAGGGTCACCATC
CCGATCTCCACGTCACGAAGTACCGCAACGTCGAGATACGCCTCTACACA
CATTCGATGGGAGGTACGAACAGCTCCGAGGGAGTGTCAGCAGCCAAGCT
TTTGGATCAGCTGCCGGTGGAGTACTCATCCAAGTGGTTGAAAGAGCACC
CCGAGGCGGCTGCGGCACCTTGAGCCAAGCTTTTGGATCAGCTGCCGGTG
GAGTACTCATCCAAGTGGTTGAAAGAGCACCCCGAGGCGGCTGCGGCACC
TTGA
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