mRNA_H-elongata_contig52102.12500.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52102.12500.1 vs. uniprot
Match: A0A6H5KRL4_9PHAE (Amino_oxidase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRL4_9PHAE) HSP 1 Score: 254 bits (648), Expect = 1.190e-79 Identity = 122/176 (69.32%), Postives = 136/176 (77.27%), Query Frame = 1
Query: 1 GRSSTCLYCAIEGPAPINGPTLLLNGDGTDTRRPVNNVVFLEQTAPSYAPEGKSLASVTVVGDPKCSDRELETRVRYHLTEWFATGEGSPGAEGGRGGTVSTRSTDVAKWRHLRTYRVPYAQPAQIPPVGEGGFYARKTELGDGVFVCGDHRATPTLDGAMRSGVMAAEAVVRSII 528
GRSSTCLY AI+GPAP+ GP L+LNG+G + PVNNVVFLEQTAPSYAP GKSLASVTVVG P CSD ELE +VR HL EWF G GG + TR DVAKW+HLRTYRVPYAQPAQ PPV EGGFY RK ++ D +FVCGDHRATPTLDGAM+SGV+A EAV +I
Sbjct: 308 GRSSTCLYYAIDGPAPVGGPILVLNGEGAKSSGPVNNVVFLEQTAPSYAPAGKSLASVTVVGSPDCSDSELEAKVRAHLAEWFDKNNGGDAGAGG----LPTRGADVAKWKHLRTYRVPYAQPAQRPPVREGGFYGRKVQVDDAIFVCGDHRATPTLDGAMKSGVLAGEAVTTDLI 479
BLAST of mRNA_H-elongata_contig52102.12500.1 vs. uniprot
Match: A0A836C819_9STRA (Amine oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C819_9STRA) HSP 1 Score: 191 bits (484), Expect = 1.870e-55 Identity = 99/178 (55.62%), Postives = 119/178 (66.85%), Query Frame = 1
Query: 1 GRSSTCLYCAIEGPAPINGPTLLLNGDGTDTRRPVNNVVFLEQTAPSYAPEGKSLASVTVVGDPKCSDRELETRVRYHLTEWFATGEGSPGAEGGRGGTVSTRSTDVAKWRHLRTYRVPYAQPAQIPP--VGEGGFYARKTELGDGVFVCGDHRATPTLDGAMRSGVMAAEAVVRSII 528
GRSSTCLY A+ G AP+ P L+LNG+GTD RPVNNV FL++ APSYAP G+SLASVTVVGDP D ELE +VR HL EWF E VA+WRHLRTYR+PYAQP+Q PP G GF R+ LG G++ CGDHR T TL+GA+ SG AA+AV+ + +
Sbjct: 314 GRSSTCLYFAVPGAAPVADPILILNGEGTDIGRPVNNVAFLDRCAPSYAPAGQSLASVTVVGDPALRDAELEKQVRAHLGEWFGEAE-------------------VARWRHLRTYRIPYAQPSQRPPSVAGVTGF-DREVALGGGLYCCGDHRGTATLNGAVESGARAADAVMAAFM 471
BLAST of mRNA_H-elongata_contig52102.12500.1 vs. uniprot
Match: A0A7S3UUR5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUR5_HETAK) HSP 1 Score: 175 bits (444), Expect = 5.420e-50 Identity = 93/174 (53.45%), Postives = 109/174 (62.64%), Query Frame = 1
Query: 4 RSSTCLYCAIEGPAPINGPTLLLNGDGTDTRRPVNNVVFLEQTAPSYAPEGKSLASVTVVGDPKCSDRELETRVRYHLTEWFATGEGSPGAEGGRGGTVSTRSTDVAKWRHLRTYRVPYAQPAQIPPVGEGGFYARKTELGDGVFVCGDHRATPTLDGAMRSGVMAAEAVVRSI 525
R+STCLY AI+G AP G L+LNG+ T RPVNNVVFLEQ APSYAP GKSLASVTVVGDP+ D LE VR HL E F G V WR LR YR+PYAQPAQ PP G +A+ + +GVF CGDHR T TL+GA SG+ A +AV+ ++
Sbjct: 244 RASTCLYYAIDGEAPQKGAVLILNGEPTSAERPVNNVVFLEQCAPSYAPPGKSLASVTVVGDPEAGDAALEPAVRAHLAEMFGPAAG------------------VEAWRLLRVYRIPYAQPAQTPPNAAG--FAKDPLVSEGVFCCGDHRGTATLNGAFESGLRATDAVLAAL 397
BLAST of mRNA_H-elongata_contig52102.12500.1 vs. uniprot
Match: C1N4P5_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N4P5_MICPC) HSP 1 Score: 150 bits (379), Expect = 1.560e-39 Identity = 83/169 (49.11%), Postives = 101/169 (59.76%), Query Frame = 1
Query: 10 STCLYCAIEGPAPINGPTLLLNGDGTDTRRPVNNVVFLEQTAPSYAPEGKSLASVTVVGDPKCSDRELETRVRYHLTEWFATGEGSPGAEGGRGGTVSTRSTDVAKWRHLRTYRVPYAQPAQIPPVGEGGFYARKTELGDGVFVCGDHRATPTLDGAMRSGVMAAEAVV 516
+TCLY I+G P+ P L LNGDG +NN F +PSYAP+GKSL SV+++G P+ SD EL RVR L WF GEG GA DV W HLRTYR+P+AQP+Q P R LG+G++VCGDHR+ T DGAM SG +AAEAVV
Sbjct: 410 TTCLYFGIDGDPPLPTPVLYLNGDGDGI---INNCCFPSAVSPSYAPKGKSLLSVSLIGVPETSDDELTARVRGELKRWFV-GEGGGGA-------------DVDAWTHLRTYRIPFAQPSQTTPTD----LERAVRLGNGMYVCGDHRSPATFDGAMMSGRLAAEAVV 557
BLAST of mRNA_H-elongata_contig52102.12500.1 vs. uniprot
Match: A0A7S2FLA4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FLA4_9STRA) HSP 1 Score: 139 bits (351), Expect = 7.760e-39 Identity = 77/178 (43.26%), Postives = 100/178 (56.18%), Query Frame = 1
Query: 4 RSSTCLYCAIEGPAPINGPTLLLNGDGTDTRRPVNNVVFLEQTAPSYAPEGKSLASVTVVG-DPKCSDRELETRVRYHLTEWFATGEGSPGAEGGRGGTVSTRSTDVAKWRHLRTYRVPYAQPAQIPPVGEGGFYARKTELGDGVFVCGDHRATPTLDGAMRSGVMAAEAVVRSIILE 534
RSSTCLY +++G P+ P L+LNG+G ++ RPVNNV F AP YAPEGKSLASVTVVG SD L + + L WF GE V +W LR+YR+ ++QP Q PP G + R E+ +G++ CGDH T TL+GAM SG A V++ E
Sbjct: 8 RSSTCLYFSLDGAPPVTDPLLVLNGEGVNSDRPVNNVCFPSAVAPKYAPEGKSLASVTVVGLADGVSDEALASSCKTQLEGWF--GE------------------SVKEWNFLRSYRIKHSQPGQTPP--NGNRFERHPEVAEGMYCCGDHTGTATLNGAMESGSRTANVVIKQYSAE 163
BLAST of mRNA_H-elongata_contig52102.12500.1 vs. uniprot
Match: C1FGZ0_MICCC (Amino_oxidase domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1FGZ0_MICCC) HSP 1 Score: 144 bits (363), Expect = 1.120e-37 Identity = 84/170 (49.41%), Postives = 99/170 (58.24%), Query Frame = 1
Query: 10 STCLYCAIEGPAPINGPTLLLNGDGTDTRRPVNNVVFLEQTAPSYAPEGKSLASVTVVGDPK-CSDRELETRVRYHLTEWFATGEGSPGAEGGRGGTVSTRSTDVAKWRHLRTYRVPYAQPAQIPPVGEGGFYARKTELGDGVFVCGDHRATPTLDGAMRSGVMAAEAVV 516
+TCLY AI+GP P++ P L LNGDG +NN F A +YAP GKSLASV++VG P D L VR L WF G+ EG G S V +WRHL+TY +PYAQP Q P R T LGDG +VCGDHR+ T DGAM SG +AAEAVV
Sbjct: 324 TTCLYFAIDGPPPLSTPILYLNGDGGGM---INNCCFPSTVASTYAPAGKSLASVSIVGVPSGIGDEALVETVRSELEAWFGAGK----CEGRNG-----ESPPVKEWRHLKTYSIPYAQPNQETP----SELERTTRLGDGAYVCGDHRSPATFDGAMMSGRIAAEAVV 477
BLAST of mRNA_H-elongata_contig52102.12500.1 vs. uniprot
Match: A0A1D1ZLU3_AUXPR (Amino_oxidase domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZLU3_AUXPR) HSP 1 Score: 143 bits (361), Expect = 1.910e-37 Identity = 83/173 (47.98%), Postives = 106/173 (61.27%), Query Frame = 1
Query: 1 GRSSTCLYCAIEGPAPINGPTLLLNGDGTDTRRPVNNVVFLEQTAPSYAPEGKSLASVTVVGD-PKCSDRELETRVRYHLTEWFATGEGSPGAEGGRGGTVSTRSTDVAKWRHLRTYRVPYAQPAQIPPVGEGGFYARKTELGDGVFVCGDHRATPTLDGAMRSGVMAAEAVV 516
G S CLY A++G P +GP L LNGD T T VNN+ F + P YAPEG+SLASV+V+GD D LE RVR L+ WF GAE V +WRHLRTYR+P++QP Q PP ++R +LG+G+FVCGDHR+ T DGA+ SG +AAEA++
Sbjct: 322 GVGSICLYFAMDGNPPRSGPYLFLNGD-TRTGL-VNNLCFPSEVVPGYAPEGQSLASVSVIGDHADLDDAALEKRVRGQLSSWFG------GAE-------------VDRWRHLRTYRIPFSQPGQRPPSD----FSRPAKLGEGLFVCGDHRSHATFDGALTSGRLAAEALL 469
BLAST of mRNA_H-elongata_contig52102.12500.1 vs. uniprot
Match: A0A7R9YHJ8_DIALT (Hypothetical protein (Fragment) n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YHJ8_DIALT) HSP 1 Score: 140 bits (352), Expect = 3.880e-36 Identity = 86/180 (47.78%), Postives = 103/180 (57.22%), Query Frame = 1
Query: 4 RSSTCLYCAIEGPAPINGPTLLLNGD------GTDTRRPVNNVVFLEQTAPSYAPEGKSLASVTVVGDPKCSDRELETRVRYHLTEWFATGEGSPGAEGGRGGTVSTRSTDVAKWRHLRTYRVPYAQPAQIPPVGEGGFYARKTELGDGVFVCGDHRATPTLDGAMRSGVMAAEAVVRSI 525
RSST +Y AI+GP PI P L+LNG+ G + +NNV F A SYAP GK+LAS TVVGDP +D ELE VR L WF GAE VA WRHLRTYRV YAQP Q+ G G + L G++ CGDH ++PTL+GAM SG AAEAV+ +
Sbjct: 311 RSSTAIYFAIDGPPPIAEPILVLNGECGRVAPGASSAV-LNNVCFPSSVASSYAPAGKALASCTVVGDPAVTDAELERAVREQLGRWF-------GAE------------RVAAWRHLRTYRVRYAQPTQL---GARGGFDWPARLDGGLYRCGDHTSSPTLNGAMASGRRAAEAVLEDL 467
BLAST of mRNA_H-elongata_contig52102.12500.1 vs. uniprot
Match: A0A7S4FA76_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FA76_CHRCT) HSP 1 Score: 139 bits (349), Expect = 1.270e-35 Identity = 76/174 (43.68%), Postives = 101/174 (58.05%), Query Frame = 1
Query: 4 RSSTCLYCAIEGPAPINGPTLLLNGDGTDTRRPVNNVVFLEQTAPSYAPEGKSLASVTVVGDPKCSDRELETRVRYHLTEWFATGEGSPGAEGGRGGTVSTRSTDVAKWRHLRTYRVPYAQPAQIPPVGEGGFYARKTELGDGVFVCGDHRATPTLDGAMRSGVMAAEAVVRSI 525
RSS C+Y +GPAP++ P L+LN R VNNV F PSYAP G +LASV+++GD + EL VR LT WF GE + AKWR L++Y YAQPAQ PP + + R +L G++VCGDHRATP+L+GA+ SG +AA+AV + +
Sbjct: 332 RSSICMYFGFQGPAPVSEPLLILNSQTLIDGRTVNNVCFPSVVCPSYAPPGHNLASVSLIGDLVSDEAELVNHVRAQLTTWF--GE------------------EAAKWRFLKSYVCRYAQPAQSPPNDDQ--FMRNVQLEPGLYVCGDHRATPSLNGALGSGALAAQAVRKQL 483
BLAST of mRNA_H-elongata_contig52102.12500.1 vs. uniprot
Match: A0A150G5U2_GONPE (Amino_oxidase domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G5U2_GONPE) HSP 1 Score: 133 bits (335), Expect = 1.050e-33 Identity = 81/173 (46.82%), Postives = 96/173 (55.49%), Query Frame = 1
Query: 1 GRSSTCLYCAIEGPAPINGPTLLLNGDGTDTRRPVNNVVFLEQTAPSYAPEGKSLASVTVVGD-PKCSDRELETRVRYHLTEWFATGEGSPGAEGGRGGTVSTRSTDVAKWRHLRTYRVPYAQPAQIPPVGEGGFYARKTELGDGVFVCGDHRATPTLDGAMRSGVMAAEAVV 516
G + CLY A AP P L LNG+G D VNN F APSYAP G++L SV+ VG + SD ELE VR L WF G+ VA WRHLRTYR+P+AQP+Q PP R LG GVFVCGDHR + TLDGA++SG AAEA++
Sbjct: 322 GVGTCCLYFAAP-QAPSPEPILYLNGEG-DGDGIVNNACFPSTVAPSYAPPGQTLVSVSTVGTFDQLSDGELEAAVRKQLGGWFGAGQ-------------------VAAWRHLRTYRIPFAQPSQAPPTN----LTRPVSLGGGVFVCGDHRDSATLDGALKSGRRAAEALL 469 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52102.12500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52102.12500.1 >prot_H-elongata_contig52102.12500.1 ID=prot_H-elongata_contig52102.12500.1|Name=mRNA_H-elongata_contig52102.12500.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp GRSSTCLYCAIEGPAPINGPTLLLNGDGTDTRRPVNNVVFLEQTAPSYAPback to top mRNA from alignment at H-elongata_contig52102:8..1387+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52102.12500.1 ID=mRNA_H-elongata_contig52102.12500.1|Name=mRNA_H-elongata_contig52102.12500.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1380bp|location=Sequence derived from alignment at H-elongata_contig52102:8..1387+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52102:8..1387+ >mRNA_H-elongata_contig52102.12500.1 ID=mRNA_H-elongata_contig52102.12500.1|Name=mRNA_H-elongata_contig52102.12500.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig52102:8..1387+ (Himanthalia elongata Himel1 dioecious)back to top |