mRNA_H-elongata_contig52098.12498.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52098.12498.1
Unique NamemRNA_H-elongata_contig52098.12498.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52098.12498.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI)

HSP 1 Score: 473 bits (1216), Expect = 2.640e-151
Identity = 260/387 (67.18%), Postives = 296/387 (76.49%), Query Frame = 1
Query:    1 QDAVEELATDPPTATERLRPLFRDLKELEPAIASLHHRRIQPSRLFSLLGTMRKVLAVFHPPLRGTVGGGGTNDGENGGDTKVDRAATARSAVLREAIAGVSPNMTSVMGRYLGQLNPQAAATDDYARVIIDGENLCDSVARAAEAENAAYAGLEKARILKYRFELQAVRSTLRKPSLQWKTLRTGVSSTVEFLVELRKSEAQKLAPSKWMQVSQTKDLVRFHTPEVLHLQQKLLQARDSRNIAARQAWAELVCQVDEDCYEGFRNTVQALGTLDALLSLAAVAKLPGYVRPVYRHNLGDRRKRSNGGIADTPGADRYHMRAESDRVDAIVLRGARHPTVERVLEGGFVPNDVDLRSGECLVVTGPNMGGKSSTVRMVALLCIMGQV 1161
            QDAVEEL TDPP+  ERLRP  RDLK+L+PAIASLHHRRIQP+RL SLLGTMRKV  VFHPP        G ++ E  G ++  +    RS VL +A+A V  NM  V+ RYLG+LN +AAA+DDY R ++DGE+LC  +  AAE E AA A LE         ELQ+VR+ LRKPSLQWKTLRTG +STVE+LVELRKSEA+KL PS WMQVSQTKDL RFHTPEVL LQQ+LL+AR+SRN+AARQAWAELV QVDE+CY GFR  VQALGTLDALLSLA VAKLPGYVRP YR    D +   +GG     G+D      E+D VD IVLRGARHPTVERVLEGGFVPNDV LR GECLVVTGPNMGGKSSTVRM AL+CI+GQ+
Sbjct:  902 QDAVEELVTDPPSVMERLRPTLRDLKDLDPAIASLHHRRIQPNRLLSLLGTMRKVFGVFHPPTAR-----GADETEGAGPSQ--QRGGPRSVVLLDALADVPANMAPVIARYLGELNAEAAASDDYVRALVDGESLCKELKTAAEEEEAAKADLET--------ELQSVRTILRKPSLQWKTLRTGATSTVEYLVELRKSEAKKLVPSGWMQVSQTKDLARFHTPEVLRLQQELLRARESRNLAARQAWAELVSQVDEECYAGFRTAVQALGTLDALLSLAVVAKLPGYVRPNYRPTA-DAKGDESGGDG---GSD-----DEADGVDEIVLRGARHPTVERVLEGGFVPNDVSLRRGECLVVTGPNMGGKSSTVRMAALICILGQM 1264          
BLAST of mRNA_H-elongata_contig52098.12498.1 vs. uniprot
Match: A0A6H5K2F4_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F4_9PHAE)

HSP 1 Score: 350 bits (898), Expect = 1.030e-113
Identity = 210/388 (54.12%), Postives = 230/388 (59.28%), Query Frame = 1
Query:    1 QDAVEELATDPPTATERLRPLFRDLKELEPAIASLHHRRIQPSRLFSLLGTMRKVLAVFHPP-LRGTVGGGGTNDGENGGDTKVDRAATARSAVLREAIAGVSPNMTSVMGRYLGQLNPQAAATDDYARVIIDGENLCDSVARAAEAENAAYAGLEKARILKYRFELQAVRSTLRKPSLQWKTLRTGVSSTVEFLVELRKSEAQKLAPSKWMQVSQTKDLVRFHTPEVLHLQQKLLQARDSRNIAARQAWAELVCQVDEDCYEGFRNTVQALGTLDALLSLAAVAKLPGYVRPVYRHNLGDRRKRSNGGIADTPGADRYHMRAESDRVDAIVLRGARHPTVERVLEGGFVPNDVDLRSGECLVVTGPNMGGKSSTVRMVALLCIMGQV 1161
            QDAVEEL  DPP+  ERLRP  RDLK+L+PA ASLHHRRIQPSRL SLLGTMRKV  +FHPP +RG     G    + GG          RSAVL +A+A V  NM  V+ RYLG+LN +AAA+                                             VR+ LRKPSLQWKTLRTG +STVE+LVELRKSEA+KL PS WMQ                                   AWAELV QVDE+CY GFR  VQALGTLDALLSLA VAKLPGYVRP YR    D+   S                 E+D VD IVLRGARHPTVERVLEGGFVPNDV LR GECLVVTGPNMGGKSSTVRM AL+CIMGQV
Sbjct:   49 QDAVEELVADPPSVMERLRPALRDLKDLDPATASLHHRRIQPSRLLSLLGTMRKVFGIFHPPTVRGADKTEGAGSSQQGGGP--------RSAVLLDALADVPANMAPVIARYLGELNAEAAAS--------------------------------------------CVRTILRKPSLQWKTLRTGATSTVEYLVELRKSEAKKLVPSDWMQ-----------------------------------AWAELVSQVDEECYAGFRTAVQALGTLDALLSLAVVAKLPGYVRPKYRPTASDKGDESXXXXXXXD---------EADGVDEIVLRGARHPTVERVLEGGFVPNDVSLRRGECLVVTGPNMGGKSSTVRMAALICIMGQV 340          
BLAST of mRNA_H-elongata_contig52098.12498.1 vs. uniprot
Match: A0A4D9D7G3_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7G3_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.680e-42
Identity = 131/389 (33.68%), Postives = 187/389 (48.07%), Query Frame = 1
Query:   64 FRDLKELEPAIASLHHRRIQPSRLFSLLGTMRKVLAVFHPP--LRGTVGGGGTNDGENGGDTKVDRAATARSAVLREAIAGV-SPNMTSVMGRYLGQLNPQAAATDDYARVIIDGENLCDSVARAAEAENAAYAGLEKARILKYRFELQAVRSTLRKPSLQWKTLRTGVSSTVEFLVELRKSEAQKLAPSKWMQVSQTKDLVRFHTPEVLHLQQKLLQARDSRNIAARQAWAELVCQVDEDCYEGFRNTVQALGTLDALLSLAAVAKLPGYVRPVYRHNLGDRRKRSNGGIADTPGADRYHMRAESDRVDAIVLRGARHPTVERVLEG---------------GFVPNDVDL-----RSGECLVVTGPNMGGKSSTVRMVALLCIMGQV 1161
            F DL  L   + +L + +I P RLF LL T+  +L    PP  L   V                      +S++LR  +  + + ++   +  +L  L+  +A TDD   +  D      +   A   + A    L+     +   EL   R  L  P+L ++TLRTG++S++E L+EL K EA   AP  W+ V+QTKDLVRFHTP+VL    +LL AR+        AWA  V +VDE C    +  V+ L TLD+LL+LA++A  PG+VRP Y     +   ++ G +                    I +R ARHP ++ V                  G VPNDVDL       G CLVVTGPNMGGKS+ +R VAL  ++GQ+
Sbjct:  358 FADLGTL---VTALRYHKIVPRRLFLLLQTLECLLLALPPPPVLEAEV----------------------KSSLLRRLLLSLPTSSLLQDVRAFLSLLHLPSAQTDDKVHLFTD-----PAFHPALSRDLALLQSLDA----ELNAELSVARRQLANPTLTFRTLRTGMNSSLECLIELPKKEAGH-APGDWLLVNQTKDLVRFHTPQVLRTLGRLLVAREETRQEGDAAWARYVKEVDERCGGKMQAVVEVLATLDSLLALASIASRPGWVRPTYVEAEDEDAGKNEGSLR-------------------ISIRDARHPVLDHVFTSSSAPTSLSSSPGPASGVVPNDVDLGVGLESPGSCLVVTGPNMGGKSTYIRTVALCQLLGQL 692          
BLAST of mRNA_H-elongata_contig52098.12498.1 vs. uniprot
Match: A0A482RUS4_9ARCH (MutS family DNA mismatch repair protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUS4_9ARCH)

HSP 1 Score: 156 bits (395), Expect = 1.090e-38
Identity = 90/229 (39.30%), Postives = 127/229 (55.46%), Query Frame = 1
Query:  496 LQAVRSTLRKPSLQWKTLRTGVSSTVEFLVELRKSEAQKLAPSKWMQVSQTKDLVRFHTPEVLHLQQKLLQARDSRNIAARQAWAELVCQVDEDCYEGFRNTVQALGTLDALLSLAAVAKLPGYVRPVYRHNLGDRRKRSNGGIADTPGADRYHMRAESDRVDAIVLRGARHPTVERVLEG---GFVPNDV----DLRSGECLVVTGPNMGGKSSTVRMVALLCIMGQV 1161
            L+ +R+ +R PSLQ+ +LRTG +S VE L+EL  S + K  PS W++VS TK ++RFHTPE+L  QQ L   RD   +   + W + +  + E  +   R  V+ LG +DALLSL+ VAK P Y  PVY                              D  + ++++  RHP + R+LE     FVPNDV    D  +  C V+TGPNMGGKSS VRM+  +C++GQ+
Sbjct:  304 LEKIRTEVRIPSLQFVSLRTGATSVVEHLIELPASFS-KPVPSNWVKVSNTKSVMRFHTPEILRAQQDLYSVRDEIKLTTDRVWQKFIIDMRETLHNALRAAVRHLGNIDALLSLSEVAKYPNYCLPVY-----------------------------PDASNEVIIQDGRHPVLSRILEDQGEAFVPNDVKLSRDFLARSCQVLTGPNMGGKSSYVRMLGSICLLGQI 502          
BLAST of mRNA_H-elongata_contig52098.12498.1 vs. uniprot
Match: MSH3_NEOFI (DNA mismatch repair protein msh3 n=20 Tax=Aspergillus TaxID=5052 RepID=MSH3_NEOFI)

HSP 1 Score: 152 bits (384), Expect = 9.950e-37
Identity = 127/394 (32.23%), Postives = 196/394 (49.75%), Query Frame = 1
Query:    4 DAVEELAT-DPPTATERLRPLFRDLK-ELEPAIASLHHRRIQPSRLFSLLGTMRKVLAVFHPPLRGTVGGGGTNDGENGGDTKVDRAATARSAVLREAIAGVSPNMTSVMGRYLGQLNPQAAATDD---YARVIIDGENLCDSVARAAEAENAAYAGLEKARILKYRFELQAVRSTLRKPSLQWKTLRTGVSSTVEFLVELRKSEAQ-KLAPSKWMQVSQTKDLVRFHTPEVLHLQQKLLQARDSRNIAARQAWAELVCQVDEDCYEGFRNTVQALGTLDALLSLAAVAKLPGYVRPVYRHNLGDRRKRSNGGIADTPGADRYHMRAESDRVDAIVLRGARHPTVERVLEGGFVPNDVDLRSGE--CLVVTGPNMGGKSSTVRMVALLCIMGQV 1161
            +AVEEL + D     ERL+ L   +K +LE  +  +++ +     L ++L T++ +   +                    D K    +   S +L EAIA V P++   + ++L ++N  AA  DD   + R   + E + +     A  E+                EL+  RS      L+W  +    SS +E+L+E+  + A  K  P+ W++VS TK L RFHTPEV+ L ++  Q +++   A  QA+A L+ ++  + Y+ FR++VQ+L TLD LLSLAA+A  PGYV+P Y                             +D+    V +G RHP VE++L   +VPND+DL S     L+VTGPNMGGKSS VR +AL+ IM Q+
Sbjct:  585 NAVEELKSPDRTVQVERLKILLGRIKSDLEKNLIRIYYGKCTRPELLTVLQTLQTIAQEYV-------------------DVKTPEDSGFTSPILGEAIARV-PSILEDVVKFLNKINMHAARNDDKYEFFRESEETEGISEHKCGIASVEH----------------ELEEHRSVA-AGILKWPKVTYVTSSGIEYLIEVENTAAAIKRVPASWVKVSGTKKLSRFHTPEVIQLLRQRDQHKEALAAACDQAFAALLAEIATN-YQSFRDSVQSLATLDCLLSLAAIASQPGYVKPEY-----------------------------TDQTCIHVEQG-RHPMVEQLLLDSYVPNDIDLDSDRTRALLVTGPNMGGKSSYVRQIALIAIMAQI 910          
BLAST of mRNA_H-elongata_contig52098.12498.1 vs. uniprot
Match: UPI001D03AED6 (Mismatch repair protein msh3 n=1 Tax=Bacidia gigantensis TaxID=2732470 RepID=UPI001D03AED6)

HSP 1 Score: 151 bits (381), Expect = 2.480e-36
Identity = 122/392 (31.12%), Postives = 194/392 (49.49%), Query Frame = 1
Query:    7 AVEELA-TDPPTATERLRPLFRDLK-ELEPAIASLHHRRIQPSRLFSLLGTMRKVLAVFHPPLRGTVGGGGTNDGENGGDTKVDRAATARSAVLREAIAGVSPNMTSVMGRYLGQLNPQAAATDD---YARVIIDGENLCDSVARAAEAENAAYAGLEKARILKYRFELQAVRSTLRKPSLQWKTLRTGVSSTVEFLVELRKSEAQKLAPSKWMQVSQTKDLVRFHTPEVLHLQQKLLQARDSRNIAARQAWAELVCQVDEDCYEGFRNTVQALGTLDALLSLAAVAKLPGYVRPVYRHNLGDRRKRSNGGIADTPGADRYHMRAESDRVDAIVLRGARHPTVERVLEGGFVPNDVDLRSGEC--LVVTGPNMGGKSSTVRMVALLCIMGQV 1161
            A+E+L  +DPP   E+L+ +   ++ +LE ++  +++ +     L S+L T++++   F      +  G                    RS+V+ EAIA + P +   +  YL Q+NPQAA +DD   + R   + +++       A  E                 +L A RS   +   + K     V+  +E+L+E+   + + + P+ W ++S TK   RFHTPEV+ L ++  Q +++   A   A++EL+  +    Y+ FR+ +QALGTLD LLSLAAVA  PGYV+P +                DT   D               ++  RHP VE++L   +VPND+DL       L++TGPNMGGKSS VR VAL+ IMGQ+
Sbjct:  616 AIEDLKNSDPPMIAEKLKRMLSQIRTDLEKSLVRIYYGKCTRPELLSVLQTLQRIANEFAWAQEPSEVG-------------------FRSSVINEAIA-ILPTIAGDVVGYLDQINPQAATSDDRYSFFREESESDDITTHKLGIASVEQ----------------DLDAYRSVAAEKLKKMKVDYVVVAG-IEYLIEVDNHQLKNV-PASWAKISGTKKNSRFHTPEVIRLIRERDQHKEALAAACDTAFSELLASISSK-YQSFRDCIQALGTLDCLLSLAAVATQPGYVKPQF---------------TDTTCID---------------VKQGRHPMVEQLLLDAYVPNDIDLAFDRTRGLLLTGPNMGGKSSYVRQVALIAIMGQI 938          
BLAST of mRNA_H-elongata_contig52098.12498.1 vs. uniprot
Match: A0A8H3FZD5_9LECA (DNA mismatch repair protein n=4 Tax=Parmeliaceae TaxID=78060 RepID=A0A8H3FZD5_9LECA)

HSP 1 Score: 150 bits (378), Expect = 6.150e-36
Identity = 122/392 (31.12%), Postives = 185/392 (47.19%), Query Frame = 1
Query:    7 AVEELATDPPTA-TERLRPLFRDLK-ELEPAIASLHHRRIQPSRLFSLLGTMRKVLAVFHPPLRGTVGGGGTNDGENGGDTKVDRAATARSAVLREAIAGVSPNMTSVMGRYLGQLNPQAAATDD---YARVIIDGENLCDSVARAAEAENAAYAGLEKARILKYRFELQAVRSTLRKPSLQWKTLRTGVSSTVEFLVELRKSEAQKLAPSKWMQVSQTKDLVRFHTPEVLHLQQKLLQARDSRNIAARQAWAELVCQVDEDCYEGFRNTVQALGTLDALLSLAAVAKLPGYVRPVYRHNLGDRRKRSNGGIADTPGADRYHMRAESDRVDAIVLRGARHPTVERVLEGGFVPNDVDLRSGE--CLVVTGPNMGGKSSTVRMVALLCIMGQV 1161
            AVEEL  D PT   ++++ L   ++ +LE ++  +++ +     L ++L TM+++   F                      K    A  RS+++  AIA + P +   +  YL Q+NP+AA  DD   + R  ++ E++ +     A  E                 EL A R        + K     V+  +E+L+E+  +   K  P+ W ++S TK + RFHTPEV+ L Q+  Q +++   A   A+A L+  +    Y+ FR+ VQAL TLD LLSLAA+A  PGYV+P Y                                   I +   RHP VE++L   +VPND  L S     L++TGPNMGGKSS VR VAL+ IMGQ+
Sbjct:  610 AVEELNDDQPTVRVDKVKHLLSQIRSDLEKSLIRIYYGKCARPELLTVLQTMQRIATEFV-------------------SVKSPSDAGFRSSIINNAIAAL-PTIAEDVVSYLDQINPEAAKVDDKYAFFREEVESEDIMEHKMGIASVEQ----------------ELDAHRPVAAGKVKKMKVDYVTVAG-IEYLIEIDNA-LLKNVPASWAKISGTKKVSRFHTPEVVRLIQERDQHKEALAAACDAAFAGLLADISSK-YQSFRDCVQALATLDCLLSLAAIASQPGYVKPEYTDET------------------------------CISVEQGRHPMVEQLLLDAYVPNDTGLASDRTRALLITGPNMGGKSSYVRQVALIAIMGQI 932          
BLAST of mRNA_H-elongata_contig52098.12498.1 vs. uniprot
Match: W6PY58_PENRF (DNA mismatch repair protein n=20 Tax=Penicillium TaxID=5073 RepID=W6PY58_PENRF)

HSP 1 Score: 149 bits (375), Expect = 1.510e-35
Identity = 123/395 (31.14%), Postives = 199/395 (50.38%), Query Frame = 1
Query:    4 DAVEELATDPPTAT--ERLRPLFRDLK-ELEPAIASLHHRRIQPSRLFSLLGTMRKVLAVFHPPLRGTVGGGGTNDGENGGDTKVDRAATARSAVLREAIAGVSPNMTSVMGRYLGQLNPQAAATDD---YARVIIDGENLCDSVARAAEAENAAYAGLEKARILKYRFELQAVRSTLRKPSLQWKTLRTGVSSTVEFLVELRK-SEAQKLAPSKWMQVSQTKDLVRFHTPEVLHLQQKLLQARDSRNIAARQAWAELVCQVDEDCYEGFRNTVQALGTLDALLSLAAVAKLPGYVRPVYRHNLGDRRKRSNGGIADTPGADRYHMRAESDRVDAIVLRGARHPTVERVLEGGFVPNDVDLRSG--ECLVVTGPNMGGKSSTVRMVALLCIMGQV 1161
            +AVEEL  DP  A   ER+R L R +K +LE ++  +++ + +   L ++L  M+ +   F                    D K       +S+++ EAIA + P + + + +YL ++N  AA T+D   + R   + E + +   +    E+          +L++R E     ST+ +  +++ T+     S +E+L+E+   S A K  P+ W++VS TK + RFHTPEV+ L ++  Q +++   A  QA+  L+  +    Y+ FR+++Q+L TLD LLSLA +A+ PGYV+P Y    G                              + +   RHP VE++L   +VPND +L       L+VTGPNMGGKSS VR VAL+ IMGQ+
Sbjct:  579 NAVEELI-DPARAVPVERVRGLLRKVKSDLEKSLIRIYYGKCERPELLTVLQAMQMIAMEF-------------------ADIKSPAQTGFQSSLVGEAIASL-PTIRASVVKYLDKINMHAARTNDKYTFFREAEETEEIGELKLQIGSTEHG---------LLEHRKEAA---STIGRGKVEYSTV-----SGIEYLIEIENNSPALKRVPASWVKVSGTKRVSRFHTPEVIQLIRERDQYKEALAAACDQAYKTLLADIAAQ-YQSFRDSIQSLATLDCLLSLADIAQQPGYVKPEYTEEAG------------------------------LHIEQGRHPMVEQLLTDTYVPNDTNLSHDGTRALLVTGPNMGGKSSYVRQVALVAIMGQI 904          
BLAST of mRNA_H-elongata_contig52098.12498.1 vs. uniprot
Match: A0A1L9S6Y7_9EURO (DNA mismatch repair protein n=1 Tax=Penicilliopsis zonata CBS 506.65 TaxID=1073090 RepID=A0A1L9S6Y7_9EURO)

HSP 1 Score: 149 bits (375), Expect = 1.520e-35
Identity = 123/395 (31.14%), Postives = 193/395 (48.86%), Query Frame = 1
Query:    4 DAVEELATDPPTA-TERLRPLFRDLK-ELEPAIASLHHRRIQPSRLFSLLGTMRKVLAVFHPPLRGTVGGGGTNDGENGGDTKVDRAATARSAVLREAIAGVSPNMTSVMGRYLGQLNPQAAATDDYARVIIDGENLCDSVARAAEAENAAYAGLEKARILKYRFELQAVRST----LRKPSLQWKTLRTGVSSTVEFLVELRK-SEAQKLAPSKWMQVSQTKDLVRFHTPEVLHLQQKLLQARDSRNIAARQAWAELVCQVDEDCYEGFRNTVQALGTLDALLSLAAVAKLPGYVRPVYRHNLGDRRKRSNGGIADTPGADRYHMRAESDRVDAIVLRGARHPTVERVLEGGFVPNDVDLRSGE--CLVVTGPNMGGKSSTVRMVALLCIMGQV 1161
            DAVEEL +   +A  ER++ L   ++ +LE ++  +++ +     L ++L T++ +   F                    D K    A   S VL EA+A + P +   +  +L ++N  AA  DD      + E        A        AG+E         EL+  RST    + K ++ + T+     + +E+L+E+   S + K  P+ W++VS TK L RFHTPEV+H+ ++  Q +++   A  QA++ L+ ++  + Y+  R+ +Q+L TLD LLSLAA+A  PGYV+P Y                                   I +   RHP VE++L   +VPND+ L S +   L+VTGPNMGGKSS VR VAL+ IMGQ+
Sbjct:  593 DAVEELKSPERSAQVERIKALLSKVRSDLEKSLIRIYYGKCTRPELLTVLQTLQMIAMEFC-------------------DVKSPADAGFASPVLGEALATL-PTILQTVVSFLDKINMHAAKKDDKYEFFRESEET-----DAISEYKLGIAGVEH--------ELREHRSTAAAVIGKKAVDYATV-----AGIEYLIEVENNSPSLKKVPASWVKVSGTKKLSRFHTPEVIHMLRQRDQHKEALAAACDQAFSALLAEISAN-YQSIRDCIQSLATLDCLLSLAAIASQPGYVKPEYTEET------------------------------CICVEKGRHPMVEQLLLDSYVPNDIKLESEQTRALLVTGPNMGGKSSYVRQVALIAIMGQI 918          
BLAST of mRNA_H-elongata_contig52098.12498.1 vs. uniprot
Match: R7YTB6_CONA1 (DNA mismatch repair protein n=1 Tax=Coniosporium apollinis (strain CBS 100218) TaxID=1168221 RepID=R7YTB6_CONA1)

HSP 1 Score: 149 bits (375), Expect = 1.530e-35
Identity = 109/302 (36.09%), Postives = 164/302 (54.30%), Query Frame = 1
Query:  268 RSAVLREAIAGVSPNMTSVMGRYLGQLNPQAAATDD---YARVIIDGENLCDSVARAAEAENAAYAGLEKARILKYRFELQAVRSTLRKPSLQWKTLRTGVSSTVEFLVELRKSEAQKLAPSKWMQVSQTKDLVRFHTPEVLHLQQKLLQARDSRNIAARQAWAELVCQVDEDCYEGFRNTVQALGTLDALLSLAAVAKLPGYVRPVYRHNLGDRRKRSNGGIADTPGADRYHMRAESDRVDAIVLRGARHPTVERVLEGGFVPNDVDLRSGE-CLVVTGPNMGGKSSTVRMVALLCIMGQV 1161
            +S++L+EAIA +    TSV+  YL ++NPQAA  DD   + R   + E + +     A  E++    L + R         A  + LRK  + + T+     S VE+L+E+  ++ + + P+ W ++S TK L RFHTPEV+ L ++  Q +++   A   A+A L+ ++    Y+  R+ +Q+L TLDALLSLA V+  PGY +PV+               AD P  D               ++  RHP VER+L   +VPNDVDL   +  L++TGPNMGGKSS VR VAL+ IM Q+
Sbjct:  722 KSSLLQEAIASLPEISTSVLD-YLERINPQAAKDDDKYAFFRDEYETEPITEHKLAIASIEDS----LNEHRA--------AAAAKLRKKKVDYVTV-----SAVEYLIEVENAQLKNV-PASWQKISGTKKLSRFHTPEVVKLLRERDQHKEALAAACDAAFAALLAEIGTK-YQALRDCIQSLATLDALLSLADVSAQPGYTKPVF---------------ADEPVID---------------VKAGRHPMVERLLLDAYVPNDVDLSPAQPALLITGPNMGGKSSYVRQVALIAIMAQI 973          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52098.12498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYL3_ECTSI2.640e-15167.18MutS protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K2F4_9PHAE1.030e-11354.12DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A4D9D7G3_9STRA3.680e-4233.68Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A482RUS4_9ARCH1.090e-3839.30MutS family DNA mismatch repair protein n=1 Tax=ar... [more]
MSH3_NEOFI9.950e-3732.23DNA mismatch repair protein msh3 n=20 Tax=Aspergil... [more]
UPI001D03AED62.480e-3631.12Mismatch repair protein msh3 n=1 Tax=Bacidia gigan... [more]
A0A8H3FZD5_9LECA6.150e-3631.12DNA mismatch repair protein n=4 Tax=Parmeliaceae T... [more]
W6PY58_PENRF1.510e-3531.14DNA mismatch repair protein n=20 Tax=Penicillium T... [more]
A0A1L9S6Y7_9EURO1.520e-3531.14DNA mismatch repair protein n=1 Tax=Penicilliopsis... [more]
R7YTB6_CONA11.530e-3536.09DNA mismatch repair protein n=1 Tax=Coniosporium a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52098contigH-elongata_contig52098:51..2966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score477.6
Seed ortholog evalue5.4e-132
Seed eggNOG ortholog2880.D7FYL3
KEGG koko:K08736
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
EggNOG free text desc.Component of the post-replicative DNA mismatch repair system (MMR)
EggNOG OGsCOG0249@1,KOG0218@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMutS protein homolog 3
Ec32 orthologEc-26_002670.2
Exons8
Model size1161
Cds size1161
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52098.12498.1prot_H-elongata_contig52098.12498.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52098 51..2966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930851.8197038-CDS-H-elongata_contig52098:50..1441622930851.8197038-CDS-H-elongata_contig52098:50..144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 51..144 -
1691679597.7786303-CDS-H-elongata_contig52098:50..1441691679597.7786303-CDS-H-elongata_contig52098:50..144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 51..144 -
1622930851.833875-CDS-H-elongata_contig52098:306..6081622930851.833875-CDS-H-elongata_contig52098:306..608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 307..608 -
1691679597.7928598-CDS-H-elongata_contig52098:306..6081691679597.7928598-CDS-H-elongata_contig52098:306..608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 307..608 -
1622930851.8509076-CDS-H-elongata_contig52098:928..10571622930851.8509076-CDS-H-elongata_contig52098:928..1057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 929..1057 -
1691679597.806501-CDS-H-elongata_contig52098:928..10571691679597.806501-CDS-H-elongata_contig52098:928..1057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 929..1057 -
1622930851.8712964-CDS-H-elongata_contig52098:1277..13431622930851.8712964-CDS-H-elongata_contig52098:1277..1343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 1278..1343 -
1691679597.8142295-CDS-H-elongata_contig52098:1277..13431691679597.8142295-CDS-H-elongata_contig52098:1277..1343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 1278..1343 -
1622930851.8853905-CDS-H-elongata_contig52098:1702..17801622930851.8853905-CDS-H-elongata_contig52098:1702..1780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 1703..1780 -
1691679597.8220825-CDS-H-elongata_contig52098:1702..17801691679597.8220825-CDS-H-elongata_contig52098:1702..1780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 1703..1780 -
1622930851.8991258-CDS-H-elongata_contig52098:1993..21161622930851.8991258-CDS-H-elongata_contig52098:1993..2116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 1994..2116 -
1691679597.8296628-CDS-H-elongata_contig52098:1993..21161691679597.8296628-CDS-H-elongata_contig52098:1993..2116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 1994..2116 -
1622930851.9123788-CDS-H-elongata_contig52098:2442..26491622930851.9123788-CDS-H-elongata_contig52098:2442..2649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 2443..2649 -
1691679597.8383296-CDS-H-elongata_contig52098:2442..26491691679597.8383296-CDS-H-elongata_contig52098:2442..2649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 2443..2649 -
1622930851.9319527-CDS-H-elongata_contig52098:2804..29661622930851.9319527-CDS-H-elongata_contig52098:2804..2966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 2805..2966 -
1691679597.847871-CDS-H-elongata_contig52098:2804..29661691679597.847871-CDS-H-elongata_contig52098:2804..2966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52098 2805..2966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52098.12498.1

>prot_H-elongata_contig52098.12498.1 ID=prot_H-elongata_contig52098.12498.1|Name=mRNA_H-elongata_contig52098.12498.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=387bp
QDAVEELATDPPTATERLRPLFRDLKELEPAIASLHHRRIQPSRLFSLLG
TMRKVLAVFHPPLRGTVGGGGTNDGENGGDTKVDRAATARSAVLREAIAG
VSPNMTSVMGRYLGQLNPQAAATDDYARVIIDGENLCDSVARAAEAENAA
YAGLEKARILKYRFELQAVRSTLRKPSLQWKTLRTGVSSTVEFLVELRKS
EAQKLAPSKWMQVSQTKDLVRFHTPEVLHLQQKLLQARDSRNIAARQAWA
ELVCQVDEDCYEGFRNTVQALGTLDALLSLAAVAKLPGYVRPVYRHNLGD
RRKRSNGGIADTPGADRYHMRAESDRVDAIVLRGARHPTVERVLEGGFVP
NDVDLRSGECLVVTGPNMGGKSSTVRMVALLCIMGQV
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mRNA from alignment at H-elongata_contig52098:51..2966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52098.12498.1 ID=mRNA_H-elongata_contig52098.12498.1|Name=mRNA_H-elongata_contig52098.12498.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2916bp|location=Sequence derived from alignment at H-elongata_contig52098:51..2966- (Himanthalia elongata Himel1 dioecious)
CAGGACGCCGTGGAGGAATTGGCGACAGACCCTCCGACTGCCACGGAGCG TCTTCGCCCTCTTTTCCGGGATCTTAAAGAGCTTGAACCAGCCATCGCGA GCCTCCACCATCGGAGGATACAGCCTAGTCGACTCTTCTCCCTCCTCGGT ACCATGCGCAAGGTGGGTGGCGAGGAAGGACAGCCCCCCTCAGATCCTGC GAGATCGTATTAGTACTGGGGCAGGTTTAAAGTCCGCATTATTTACCTTT CTAACTGGAACTCTGCCTGCTCGTACGGCTGCCTACAAGCGTGACCTGCA ACGCTCCTTTTGTGAAGGTGCTAGCGGTGTTCCACCCCCCACTTCGAGGA ACTGTAGGCGGGGGCGGAACAAATGACGGAGAGAATGGCGGAGACACGAA GGTTGACCGCGCGGCGACCGCAAGGTCGGCGGTGCTACGAGAAGCTATCG CGGGCGTGTCGCCGAACATGACATCGGTGATGGGGCGCTATCTGGGGCAG CTCAATCCTCAGGCCGCGGCCACGGTGAGCGCGATTACCTCTATCGATGC CGTCTGCAACATATTTGAAGTACGTGGTAGTGTCTTACCCGTGTAAATTA TGTACCTTCATTTAGGCTGGTGGAACCAGGGTTGCGACGGAACGATTTTC ACAATCCTCGTTGACGAGTATCCGTCGCTCTTTTTCTTCTTTACTACGTT GGCTGGCGGCTTAAGAGAACTGGTCACTCTCAAGATAATCCCTAGTAAGC GCATATTTCTTTTGTGGAGATGTGTCACAAGGTCAGGAACTATTTTGTGT CCAGTCACGCGGATGATCCTATCCCCACTTACGCGGTCCGAATGGAACAG GACGATTACGCCCGAGTTATAATCGACGGCGAGAACCTGTGCGATTCCGT GGCGAGAGCCGCCGAGGCCGAGAATGCCGCATACGCCGGGCTTGAGAAGG CAAGGATACTTAAATATCGCTTCGTTTAGCTTGTAGACGGATTCTTGTGG AGAAGGGCAGTTCATAGCAGGAGATATGCTCTTCAGAATGAGGGATTGGC TTGTCAAGTTGTCCGGGCTGCCGATGGAGCTCTTGCGGTGCGACAGGATT CGTGCAATTTGCGCGCGTTGGCTAGGACGAGGGAGCATCGTGCCTCATGC GAAAATTATTAATCGCCCCGCGCCCCGGTCCCACAGGAATTACAAGCTGT GCGGAGCACCTTGCGCAAGCCTAGCCTCCAGTGGAAGACGTTGAGGACTG GGGTCAGCAGTACCGTGAGTTTGCAGGAAGCCGTCGCCGTACACCATTTG CTGTGTATACCGACTCATCTCTCATTTCATTTCCCCCCTCTCAGTATCCT CTTGAGAACGACGTTCCGCTGGCCATGGCTTCTGCTCTAGAAGATGTGTG ATAGCGGTGACTTCACTCAAACGCATCGTTGGGCAAGACGGGACACAAAG AAATTCGTGCCACACTTAGCCAAACCTAGTAGTTCAGCCGCGCTTGTGCC GTCAACAAAAATTTTCGTTTGTGAGTCCAGAGCTCTGGCGTAGCCAGTGT GTGGACCCTGAATAGCCCACCCCCGCCAACTTTCTCCCCCCCCCGCGATT TTTGCCGCTCTACCGACCTCCAGGTGGAGTTCCTCGTAGAACTCCGAAAG AGTGAGGCGCAAAAGTTGGCTCCATCCAAATGGATGCAGGTACGATAGGT TTAGACAGCCCTGCTGCCGCTCAGGGTATGCACACTAATGGTGTCGTGTG TCGTAAACGTAGAAGTTCTTGCTGTCCCCACCTCCTCAGCACTGTTACGC CCCCATACCCCAAGTCGCTCTCCCCCACCCACCCTATCTTTGTCTTTATA CCCCCCGCCCCCCCTGTCGTCGACGGTCGTTACACATTGTTTTTTATAAA CGACGAAAGGTAAGCCAAACGAAGGATCTCGTTCGCTTCCACACGCCAGA AGTACTGCACCTACAGCAAAAACTTCTTCAAGCTCGAGACTCGCGAAACA TCGCCGCTAGACAGGCGTGGGCGGAGCTCGTCTGTCAGGTAGGAAATATG GTTTTCATCCGCTTCCCTGTTCTTGCCCATAAAGCGAAGTTGTTATTTAC TGTCAAACTCTAAGAGTTATTCCCAATGACGGCACGGGTCAATAACTAAG CTACGGAGTGCTTTCCTGAGGCGGTGTGTCCACTCATCCCGCCAGGTGGC ATGCCAATTTTCTGTAGACATGAAACTTTCAATATGTGCTATTGTGAGAC CCAGAGGGTGAAAGCACGATGCCAAGCTGGCAACTATCGAGGCAGCTTGG CGGTGAGGTGGGAACCCCGACGCTTTCGCGACTCTCGTGTGTACCGGTCC TTGCTCAGGTGGACGAGGATTGCTATGAAGGCTTCCGAAACACTGTCCAG GCCTTGGGTACCCTTGACGCCCTCCTTTCGCTCGCCGCCGTGGCCAAGTT GCCCGGTTACGTCAGACCTGTATACCGTCATAACCTTGGAGACAGACGCA AACGCAGCAATGGGGGCATTGCTGATACACCAGGAGCTGACAGATACCAT ATGAGGGCCGAAAGCGACAGAGTCGATGCAATCGTGTTGCGCGGCGCGAG GCATCCCACCGTGGAGCGAGTCTTGGAGGGAGGTTTCGTTCCCAACGATG TGGACCTGAGGTGACGCTGGCGATGAGCCCCATCACGATTGCGGACGCTG GCAGCTTCATAGTGATCATTTCACCCTTAATTGCTGTCATGACCTTGTTT GATGTGCAAAAAATATTTTCAGCATGTCTAACAGGCGTTTTCGTGATGAC GTCTTGGTCGGTTGCCCGGTAGGAGCGGAGAGTGTCTGGTTGTGACAGGA CCAAACATGGGCGGGAAGAGCAGCACTGTTCGCATGGTTGCGCTGCTTTG CATAATGGGACAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig52098:51..2966-

>mRNA_H-elongata_contig52098.12498.1 ID=mRNA_H-elongata_contig52098.12498.1|Name=mRNA_H-elongata_contig52098.12498.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2322bp|location=Sequence derived from alignment at H-elongata_contig52098:51..2966- (Himanthalia elongata Himel1 dioecious)
CAGGACGCCGTGGAGGAATTGGCGACAGACCCTCCGACTGCCACGGAGCG
TCTTCGCCCTCTTTTCCGGGATCTTAAAGAGCTTGAACCAGCCATCGCGA
GCCTCCACCATCGGAGGATACAGCCTAGTCGACTCTTCTCCCTCCTCGGT
ACCATGCGCAAGCAGGACGCCGTGGAGGAATTGGCGACAGACCCTCCGAC
TGCCACGGAGCGTCTTCGCCCTCTTTTCCGGGATCTTAAAGAGCTTGAAC
CAGCCATCGCGAGCCTCCACCATCGGAGGATACAGCCTAGTCGACTCTTC
TCCCTCCTCGGTACCATGCGCAAGGTGCTAGCGGTGTTCCACCCCCCACT
TCGAGGAACTGTAGGCGGGGGCGGAACAAATGACGGAGAGAATGGCGGAG
ACACGAAGGTTGACCGCGCGGCGACCGCAAGGTCGGCGGTGCTACGAGAA
GCTATCGCGGGCGTGTCGCCGAACATGACATCGGTGATGGGGCGCTATCT
GGGGCAGCTCAATCCTCAGGCCGCGGCCACGGTGCTAGCGGTGTTCCACC
CCCCACTTCGAGGAACTGTAGGCGGGGGCGGAACAAATGACGGAGAGAAT
GGCGGAGACACGAAGGTTGACCGCGCGGCGACCGCAAGGTCGGCGGTGCT
ACGAGAAGCTATCGCGGGCGTGTCGCCGAACATGACATCGGTGATGGGGC
GCTATCTGGGGCAGCTCAATCCTCAGGCCGCGGCCACGGACGATTACGCC
CGAGTTATAATCGACGGCGAGAACCTGTGCGATTCCGTGGCGAGAGCCGC
CGAGGCCGAGAATGCCGCATACGCCGGGCTTGAGAAGGCAAGGATACTTA
AATATCGCTTCGACGATTACGCCCGAGTTATAATCGACGGCGAGAACCTG
TGCGATTCCGTGGCGAGAGCCGCCGAGGCCGAGAATGCCGCATACGCCGG
GCTTGAGAAGGCAAGGATACTTAAATATCGCTTCGAATTACAAGCTGTGC
GGAGCACCTTGCGCAAGCCTAGCCTCCAGTGGAAGACGTTGAGGACTGGG
GTCAGCAGTACCGAATTACAAGCTGTGCGGAGCACCTTGCGCAAGCCTAG
CCTCCAGTGGAAGACGTTGAGGACTGGGGTCAGCAGTACCGTGGAGTTCC
TCGTAGAACTCCGAAAGAGTGAGGCGCAAAAGTTGGCTCCATCCAAATGG
ATGCAGGTGGAGTTCCTCGTAGAACTCCGAAAGAGTGAGGCGCAAAAGTT
GGCTCCATCCAAATGGATGCAGGTAAGCCAAACGAAGGATCTCGTTCGCT
TCCACACGCCAGAAGTACTGCACCTACAGCAAAAACTTCTTCAAGCTCGA
GACTCGCGAAACATCGCCGCTAGACAGGCGTGGGCGGAGCTCGTCTGTCA
GGTAAGCCAAACGAAGGATCTCGTTCGCTTCCACACGCCAGAAGTACTGC
ACCTACAGCAAAAACTTCTTCAAGCTCGAGACTCGCGAAACATCGCCGCT
AGACAGGCGTGGGCGGAGCTCGTCTGTCAGGTGGACGAGGATTGCTATGA
AGGCTTCCGAAACACTGTCCAGGCCTTGGGTACCCTTGACGCCCTCCTTT
CGCTCGCCGCCGTGGCCAAGTTGCCCGGTTACGTCAGACCTGTATACCGT
CATAACCTTGGAGACAGACGCAAACGCAGCAATGGGGGCATTGCTGATAC
ACCAGGAGCTGACAGATACCATATGAGGGCCGAAAGCGACAGAGTCGATG
CAATCGTGTTGCGCGGCGCGAGGCATCCCACCGTGGAGCGAGTCTTGGAG
GGAGGTTTCGTTCCCAACGATGTGGACCTGAGGTGGACGAGGATTGCTAT
GAAGGCTTCCGAAACACTGTCCAGGCCTTGGGTACCCTTGACGCCCTCCT
TTCGCTCGCCGCCGTGGCCAAGTTGCCCGGTTACGTCAGACCTGTATACC
GTCATAACCTTGGAGACAGACGCAAACGCAGCAATGGGGGCATTGCTGAT
ACACCAGGAGCTGACAGATACCATATGAGGGCCGAAAGCGACAGAGTCGA
TGCAATCGTGTTGCGCGGCGCGAGGCATCCCACCGTGGAGCGAGTCTTGG
AGGGAGGTTTCGTTCCCAACGATGTGGACCTGAGGAGCGGAGAGTGTCTG
GTTGTGACAGGACCAAACATGGGCGGGAAGAGCAGCACTGTTCGCATGGT
TGCGCTGCTTTGCATAATGGGACAGGTAGAGCGGAGAGTGTCTGGTTGTG
ACAGGACCAAACATGGGCGGGAAGAGCAGCACTGTTCGCATGGTTGCGCT
GCTTTGCATAATGGGACAGGTA
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