mRNA_H-elongata_contig52049.12489.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52049.12489.1
Unique NamemRNA_H-elongata_contig52049.12489.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52049.12489.1 vs. uniprot
Match: A0A5D3DSP6_CUCME (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DSP6_CUCME)

HSP 1 Score: 50.4 bits (119), Expect = 2.820e-5
Identity = 33/84 (39.29%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:    7 PWILDSGATGHFTHDGSRLSGYAECRRVLRGAGSETFPIVGTASLTLCVRSGGGMVRV----ELNDVAHVPGLSHHLLPLRRIT 246
            PWILDSGAT HFT        Y  C      AG+E   I   A  +L   +G G + +     L +V HVP LS++LL + +IT
Sbjct:  261 PWILDSGATDHFTSFSEHFVTYTSC------AGNEKIQI---ADGSLAPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKIT 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52049.12489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5D3DSP6_CUCME2.820e-539.29Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52049contigH-elongata_contig52049:3519..3764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930850.8897371-CDS-H-elongata_contig52049:3518..37641622930850.8897371-CDS-H-elongata_contig52049:3518..3764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52049 3519..3764 +
1691679597.3511016-CDS-H-elongata_contig52049:3518..37641691679597.3511016-CDS-H-elongata_contig52049:3518..3764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52049 3519..3764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52049.12489.1prot_H-elongata_contig52049.12489.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52049 3519..3764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52049.12489.1

>prot_H-elongata_contig52049.12489.1 ID=prot_H-elongata_contig52049.12489.1|Name=mRNA_H-elongata_contig52049.12489.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
EVPWILDSGATGHFTHDGSRLSGYAECRRVLRGAGSETFPIVGTASLTLC
VRSGGGMVRVELNDVAHVPGLSHHLLPLRRIT
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mRNA from alignment at H-elongata_contig52049:3519..3764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52049.12489.1 ID=mRNA_H-elongata_contig52049.12489.1|Name=mRNA_H-elongata_contig52049.12489.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig52049:3519..3764+ (Himanthalia elongata Himel1 dioecious)
GAAGTACCCTGGATACTGGATTCGGGGGCTACCGGCCATTTTACGCATGA
CGGCAGCAGACTTTCCGGCTACGCGGAGTGCAGAAGAGTGTTGCGTGGCG
CCGGAAGCGAGACTTTCCCAATCGTAGGCACTGCCTCTTTGACTTTGTGC
GTTCGATCTGGGGGGGGGATGGTTCGTGTCGAGCTAAACGACGTTGCGCA
CGTGCCAGGCCTCTCCCACCACTTGTTGCCCTTGCGACGGATTACC
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Coding sequence (CDS) from alignment at H-elongata_contig52049:3519..3764+

>mRNA_H-elongata_contig52049.12489.1 ID=mRNA_H-elongata_contig52049.12489.1|Name=mRNA_H-elongata_contig52049.12489.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig52049:3519..3764+ (Himanthalia elongata Himel1 dioecious)
GAAGTACCCTGGATACTGGATTCGGGGGCTACCGGCCATTTTACGCATGA
CGGCAGCAGACTTTCCGGCTACGCGGAGTGCAGAAGAGTGTTGCGTGGCG
CCGGAAGCGAGACTTTCCCAATCGTAGGCACTGCCTCTTTGACTTTGTGC
GTTCGATCTGGGGGGGGGATGGTTCGTGTCGAGCTAAACGACGTTGCGCA
CGTGCCAGGCCTCTCCCACCACTTGTTGCCCTTGCGACGGATTACCGAAG
TACCCTGGATACTGGATTCGGGGGCTACCGGCCATTTTACGCATGACGGC
AGCAGACTTTCCGGCTACGCGGAGTGCAGAAGAGTGTTGCGTGGCGCCGG
AAGCGAGACTTTCCCAATCGTAGGCACTGCCTCTTTGACTTTGTGCGTTC
GATCTGGGGGGGGGATGGTTCGTGTCGAGCTAAACGACGTTGCGCACGTG
CCAGGCCTCTCCCACCACTTGTTGCCCTTGCGACGGATTACC
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