mRNA_H-elongata_contig52007.12484.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52007.12484.1
Unique NamemRNA_H-elongata_contig52007.12484.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: D7FXB9_ECTSI (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB9_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.720e-42
Identity = 67/95 (70.53%), Postives = 79/95 (83.16%), Query Frame = 1
Query:   28 RNPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLPEMHRRSNPGR 312
            RNPFDPKER+VKRLI V GD+VRP G++H ++RVP+G CWVEGDN   SGDSN FGPIPLALIEAK+THVLWPP R+  L Q+LPE+HR  NP +
Sbjct:   80 RNPFDPKERVVKRLIGVDGDWVRPRGNKHNLMRVPEGYCWVEGDNHGVSGDSNHFGPIPLALIEAKVTHVLWPPGRMRSLGQDLPEIHRGLNPSQ 174          
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A2G5CLM4_AQUCA (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CLM4_AQUCA)

HSP 1 Score: 112 bits (281), Expect = 4.430e-27
Identity = 48/87 (55.17%), Postives = 67/87 (77.01%), Query Frame = 1
Query:   25 HRNPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLPE 285
            +R+P D KE+ +KR+IA+ GD++    S  E L++P+G CWVEGDNP  S DS  FGPIPLALIE K+TH++WPP+R+G +++ LPE
Sbjct:   78 YRSPNDYKEKQIKRIIALEGDWINVPNS-FETLKIPRGHCWVEGDNPTNSVDSRSFGPIPLALIEGKVTHIIWPPQRVGKVEKILPE 163          
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A2K1K4M5_PHYPA (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K4M5_PHYPA)

HSP 1 Score: 110 bits (275), Expect = 4.560e-26
Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   28 RNPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLPE 285
            R+P +PK  +VKRLIA+ GD+V   G+ ++IL+VP+G CWVEGDN   S DS  FGPIPL L++ K+THV+WPP R GP+  +LPE
Sbjct:   82 RSPLEPKMWLVKRLIALQGDWVTVPGT-YDILQVPKGHCWVEGDNAEISLDSKSFGPIPLGLMKGKVTHVVWPPSRFGPVASHLPE 166          
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A388KQ27_CHABU (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KQ27_CHABU)

HSP 1 Score: 107 bits (268), Expect = 6.740e-26
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   31 NPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLPE 285
            +P +PK  +VKRLIA+ GD+V   G+ ++I +VP+G CWVEGDNP  S DS  FGP+PLAL+E ++THV+WPP R G ++  +PE
Sbjct:   17 SPEEPKVCLVKRLIALQGDWVSVPGT-YDITQVPKGHCWVEGDNPMVSSDSKAFGPVPLALLEGRVTHVIWPPTRAGRVESRVPE 100          
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A2P2J7I6_RHIMU (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J7I6_RHIMU)

HSP 1 Score: 106 bits (265), Expect = 1.820e-25
Identity = 42/83 (50.60%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   31 NPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNL 279
            +P + KE+ VKR+I + GD++    S H+++++PQG CWVEGD+P FS DS  FGPIPL LI  ++TH++WPPRR+G +D+ +
Sbjct:   18 SPINHKEKYVKRIIGLPGDWIGTPYS-HDVVKIPQGHCWVEGDDPSFSMDSRSFGPIPLGLINGRVTHIVWPPRRVGKVDRRI 99          
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A176VCD5_MARPO (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VCD5_MARPO)

HSP 1 Score: 108 bits (270), Expect = 2.170e-25
Identity = 46/85 (54.12%), Postives = 66/85 (77.65%), Query Frame = 1
Query:   28 RNPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLP 282
            R+P DPKE +VKRLIA+  D++   G+ +EIL++P+G CWVEGDN   S DS +FGPIP+AL+  ++THV+WPP+R+GP++   P
Sbjct:   81 RSPQDPKEYLVKRLIALQEDWITVPGT-YEILQIPKGHCWVEGDNVDVSLDSKEFGPIPIALMRGRVTHVVWPPQRLGPVESKYP 164          
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A2P5BQT5_PARAD (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5BQT5_PARAD)

HSP 1 Score: 108 bits (269), Expect = 2.390e-25
Identity = 45/87 (51.72%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   31 NPFDPKERMVKRLIAVGGDYVRPLGSRH--EILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLPE 285
            +P + KER +KR+I + GD+V   G RH  ++ RVPQG CWVEGDNP  S DSN FGP+PL L++ ++TH++WPP+R+G +++ +PE
Sbjct:   77 SPQNHKERHIKRIIGLPGDWV---GIRHSSDVFRVPQGHCWVEGDNPASSMDSNTFGPVPLGLVQGRVTHIVWPPQRLGAVEKRVPE 160          
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A6P4APA3_ZIZJJ (Mitochondrial inner membrane protease subunit 2 n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4APA3_ZIZJJ)

HSP 1 Score: 107 bits (266), Expect = 7.370e-25
Identity = 44/86 (51.16%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   31 NPFDPKERMVKRLIAVGGDYVRPLGSRH--EILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLP 282
            +P + KE+ +KR+IA+ GD++   G RH  ++LR+P G CWVEGDNP  S DSN FGPIPL L++ ++TH++WPP+RIG +++ +P
Sbjct:   81 SPSNHKEKHIKRVIALPGDWI---GIRHTSDVLRIPDGHCWVEGDNPSSSMDSNSFGPIPLGLVKGRVTHIVWPPQRIGAVEKRIP 163          
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A8K0HBZ9_9ROSA (Uncharacterized protein n=2 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HBZ9_9ROSA)

HSP 1 Score: 106 bits (265), Expect = 9.280e-25
Identity = 46/98 (46.94%), Postives = 71/98 (72.45%), Query Frame = 1
Query:    1 CFLRRGRSHRN--PFDPKERMVKRLIAVGGDYVRPLGSRH--EILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLP 282
            C ++   SH +  P + KE+ +KR+IA+ GD++   G RH  ++ R+P+G CWVEGDNP  S DSN FGPIPL L++ ++TH++WPP+RIG +++ +P
Sbjct:   65 CLVKYKFSHGDVLPSNHKEKHIKRIIALPGDWI---GIRHCSDVRRIPEGHCWVEGDNPSSSMDSNSFGPIPLGLVKGRVTHIVWPPQRIGAVEKRIP 159          
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A3S3QY08_9MAGN (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3QY08_9MAGN)

HSP 1 Score: 108 bits (271), Expect = 2.040e-24
Identity = 49/85 (57.65%), Postives = 66/85 (77.65%), Query Frame = 1
Query:   28 RNPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLP 282
            R+P + KE +VKRLIA+ GD++R   SR EIL++PQG CWVEGDN   S DS  FGPIPLALI+ + +HV+WPP+R+G +++ LP
Sbjct:  196 RSPSNHKETLVKRLIALPGDWIRVPESR-EILKIPQGHCWVEGDNSTSSLDSRSFGPIPLALIQGRASHVIWPPQRMGEVERKLP 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXB9_ECTSI1.720e-4270.53Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A2G5CLM4_AQUCA4.430e-2755.17Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A2K1K4M5_PHYPA4.560e-2656.98Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A388KQ27_CHABU6.740e-2654.12Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A2P2J7I6_RHIMU1.820e-2550.60Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A176VCD5_MARPO2.170e-2554.12Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A2P5BQT5_PARAD2.390e-2551.72Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A6P4APA3_ZIZJJ7.370e-2551.16Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A8K0HBZ9_9ROSA9.280e-2546.94Uncharacterized protein n=2 Tax=Rhamnella rubriner... [more]
A0A3S3QY08_9MAGN2.040e-2457.65Mitochondrial inner membrane protease subunit 2 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52007contigH-elongata_contig52007:1181..2645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue4.7e-28
Seed eggNOG ortholog2880.D7FXB9
KEGG koko:K09648
KEGG Pathwayko03060,map03060
EggNOG free text desc.protein processing involved in protein targeting to mitochondrion
EggNOG OGsCOG0681@1,KOG1568@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionImp2 homolog, Inner Membrane Peptidase complex subunit 2
Ec32 orthologEc-04_000030.1
Exons2
Model size853
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52007.12484.1prot_H-elongata_contig52007.12484.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52007 1719..2591 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930850.493157-UTR-H-elongata_contig52007:1180..17181622930850.493157-UTR-H-elongata_contig52007:1180..1718Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52007 1181..1718 -
1691679597.2067933-UTR-H-elongata_contig52007:1180..17181691679597.2067933-UTR-H-elongata_contig52007:1180..1718Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52007 1181..1718 -
1622930850.549635-UTR-H-elongata_contig52007:2591..26451622930850.549635-UTR-H-elongata_contig52007:2591..2645Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52007 2592..2645 -
1691679597.2398133-UTR-H-elongata_contig52007:2591..26451691679597.2398133-UTR-H-elongata_contig52007:2591..2645Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52007 2592..2645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930850.514296-CDS-H-elongata_contig52007:1718..18351622930850.514296-CDS-H-elongata_contig52007:1718..1835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52007 1719..1835 -
1691679597.2202218-CDS-H-elongata_contig52007:1718..18351691679597.2202218-CDS-H-elongata_contig52007:1718..1835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52007 1719..1835 -
1622930850.5321968-CDS-H-elongata_contig52007:2447..25911622930850.5321968-CDS-H-elongata_contig52007:2447..2591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52007 2448..2591 -
1691679597.2302895-CDS-H-elongata_contig52007:2447..25911691679597.2302895-CDS-H-elongata_contig52007:2447..2591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52007 2448..2591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52007.12484.1

>prot_H-elongata_contig52007.12484.1 ID=prot_H-elongata_contig52007.12484.1|Name=mRNA_H-elongata_contig52007.12484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIP
LALIEAKITHVLWPPRRIGPLDQNLPEMHRRSNPGR*
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mRNA from alignment at H-elongata_contig52007:1181..2645-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52007.12484.1 ID=mRNA_H-elongata_contig52007.12484.1|Name=mRNA_H-elongata_contig52007.12484.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1465bp|location=Sequence derived from alignment at H-elongata_contig52007:1181..2645- (Himanthalia elongata Himel1 dioecious)
TGTTTTCTGCGTCGGGGACGTTCGCACAGGAATCCGTTTGACCCGAAGGA GCGAATGGTGAAGAGGCTTATTGCGGTCGGCGGGGACTATGTGCGACCCC TAGGGAGCAGGCATGAAATTCTTCGAGTGCCTCAAGGGTCTTGCTGGGTG GAAGGGGACAATCCCAGGTTTAGCGGAGACAGCAATCAGTTCGGACCGGT ACGTTCTTTTCAAAAGGCAAACGTAACACGTCACAAATTTTGAAAGCTCC CAGCGATCCCAAATTTGACACACTGTTACGCCTTATGTGCTTGTATAAAA TTAATGTCAGTGGGGGCCATGTTTTCTCGTGTTGGGCTAACGTAAATATT TTCTATTTTAGATTTTCTGCTAGGTATAGAGACAAGTGTTTTTGCTTCTC ACTAAATATATATTAGCCACGTTGTACAGTAGTTAGGTAGGTCGTGTTGG TAACCGATACGCTTAAACTGAGAGACAAGACGGTATGTCTTCCAATGCCT ATACTCTAGTATAGTACCGTTTACGTTAAAAAATCTCTTGTTCCAGATGT ACCATAGTATTACTAGATGTACCATAGTATTACTTCTAACGGGTCCTCCA GTATAACTGCACCTCTAAGCAACGCAGCGCTCGTTTTGGTGTATGCGTAG GAGACTAGTGGTCGAGGATCACCGACCTACGCTCGGTGCACCTTCGTAGG TCGGCGCGAAAATACACCAAAATCATAAAATACCCGCTCCTCAGCGCTAG CCGACGCTTTTTTCAAGTCTCTCCCTCCGTCTCTCATGCTCCGTGATTGT TTGTTCACAGATACCGCTCGCCCTCATCGAGGCAAAGATTACCCACGTGC TGTGGCCGCCAAGGCGAATAGGGCCCCTCGATCAAAATCTTCCAGAGATG CACCGGCGCTCCAATCCTGGCCGATGAAAACAGTAATTGACTTCTTGATC AGTGCGAATGGTCTACCCGCTACCCTTTACCCGCTGCGGAGCTCTGCGCA ATGTCGTGTGCGTCCTCATGGGGAGAGGAGTTTTCGTCTTGCCCAATCCT CCTCAACCAGTTTAAATGATGGCACACGTCCAACTTTTGTCAAGCGTGAT TTGCTGTACGCCGTTCGCGAGTGTTCTTGTACTACAGATATTTTGCGGGT TGGATATCTTTTTGCTTTCACAAGTAGGCACTCTGATCAAAGTAGAAATG GGCGTTGAAATCGACACGGAAAAACGCTACCATCCCAAGATGCGATCACT TCTAATATATCGTACCATATTCCGTCCTGGTCGATTATTCCTCATCTGCT GTCAAATTGTGAGACGGTGGAGATCAAGCCTAGCATCCACTGGAGGTAGG TCTTCCGCGCATTGAGAAACCGGTAATGGCCGCATGACATCATCGATCTG TATTAACTACATTAATTAGGACAAATCAGTAACTACTGTTTTTTTGTACG CATGTTTGTCTGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig52007:1181..2645-

>mRNA_H-elongata_contig52007.12484.1 ID=mRNA_H-elongata_contig52007.12484.1|Name=mRNA_H-elongata_contig52007.12484.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig52007:1181..2645- (Himanthalia elongata Himel1 dioecious)
ATGGTGAAGAGGCTTATTGCGGTCGGCGGGGACTATGTGCGACCCCTAGG
GAGCAGGCATGAAATTCTTCGAGTGCCTCAAGGGTCTTGCTGGGTGGAAG
GGGACAATCCCAGGTTTAGCGGAGACAGCAATCAGTTCGGACCGATGGTG
AAGAGGCTTATTGCGGTCGGCGGGGACTATGTGCGACCCCTAGGGAGCAG
GCATGAAATTCTTCGAGTGCCTCAAGGGTCTTGCTGGGTGGAAGGGGACA
ATCCCAGGTTTAGCGGAGACAGCAATCAGTTCGGACCGATACCGCTCGCC
CTCATCGAGGCAAAGATTACCCACGTGCTGTGGCCGCCAAGGCGAATAGG
GCCCCTCGATCAAAATCTTCCAGAGATGCACCGGCGCTCCAATCCTGGCC
GATGAATACCGCTCGCCCTCATCGAGGCAAAGATTACCCACGTGCTGTGG
CCGCCAAGGCGAATAGGGCCCCTCGATCAAAATCTTCCAGAGATGCACCG
GCGCTCCAATCCTGGCCGATGA
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