mRNA_H-elongata_contig52007.12484.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: D7FXB9_ECTSI (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB9_ECTSI) HSP 1 Score: 152 bits (385), Expect = 1.720e-42 Identity = 67/95 (70.53%), Postives = 79/95 (83.16%), Query Frame = 1
Query: 28 RNPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLPEMHRRSNPGR 312
RNPFDPKER+VKRLI V GD+VRP G++H ++RVP+G CWVEGDN SGDSN FGPIPLALIEAK+THVLWPP R+ L Q+LPE+HR NP +
Sbjct: 80 RNPFDPKERVVKRLIGVDGDWVRPRGNKHNLMRVPEGYCWVEGDNHGVSGDSNHFGPIPLALIEAKVTHVLWPPGRMRSLGQDLPEIHRGLNPSQ 174
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A2G5CLM4_AQUCA (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CLM4_AQUCA) HSP 1 Score: 112 bits (281), Expect = 4.430e-27 Identity = 48/87 (55.17%), Postives = 67/87 (77.01%), Query Frame = 1
Query: 25 HRNPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLPE 285
+R+P D KE+ +KR+IA+ GD++ S E L++P+G CWVEGDNP S DS FGPIPLALIE K+TH++WPP+R+G +++ LPE
Sbjct: 78 YRSPNDYKEKQIKRIIALEGDWINVPNS-FETLKIPRGHCWVEGDNPTNSVDSRSFGPIPLALIEGKVTHIIWPPQRVGKVEKILPE 163
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A2K1K4M5_PHYPA (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K4M5_PHYPA) HSP 1 Score: 110 bits (275), Expect = 4.560e-26 Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 1
Query: 28 RNPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLPE 285
R+P +PK +VKRLIA+ GD+V G+ ++IL+VP+G CWVEGDN S DS FGPIPL L++ K+THV+WPP R GP+ +LPE
Sbjct: 82 RSPLEPKMWLVKRLIALQGDWVTVPGT-YDILQVPKGHCWVEGDNAEISLDSKSFGPIPLGLMKGKVTHVVWPPSRFGPVASHLPE 166
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A388KQ27_CHABU (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KQ27_CHABU) HSP 1 Score: 107 bits (268), Expect = 6.740e-26 Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 1
Query: 31 NPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLPE 285
+P +PK +VKRLIA+ GD+V G+ ++I +VP+G CWVEGDNP S DS FGP+PLAL+E ++THV+WPP R G ++ +PE
Sbjct: 17 SPEEPKVCLVKRLIALQGDWVSVPGT-YDITQVPKGHCWVEGDNPMVSSDSKAFGPVPLALLEGRVTHVIWPPTRAGRVESRVPE 100
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A2P2J7I6_RHIMU (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J7I6_RHIMU) HSP 1 Score: 106 bits (265), Expect = 1.820e-25 Identity = 42/83 (50.60%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 31 NPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNL 279
+P + KE+ VKR+I + GD++ S H+++++PQG CWVEGD+P FS DS FGPIPL LI ++TH++WPPRR+G +D+ +
Sbjct: 18 SPINHKEKYVKRIIGLPGDWIGTPYS-HDVVKIPQGHCWVEGDDPSFSMDSRSFGPIPLGLINGRVTHIVWPPRRVGKVDRRI 99
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A176VCD5_MARPO (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VCD5_MARPO) HSP 1 Score: 108 bits (270), Expect = 2.170e-25 Identity = 46/85 (54.12%), Postives = 66/85 (77.65%), Query Frame = 1
Query: 28 RNPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLP 282
R+P DPKE +VKRLIA+ D++ G+ +EIL++P+G CWVEGDN S DS +FGPIP+AL+ ++THV+WPP+R+GP++ P
Sbjct: 81 RSPQDPKEYLVKRLIALQEDWITVPGT-YEILQIPKGHCWVEGDNVDVSLDSKEFGPIPIALMRGRVTHVVWPPQRLGPVESKYP 164
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A2P5BQT5_PARAD (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5BQT5_PARAD) HSP 1 Score: 108 bits (269), Expect = 2.390e-25 Identity = 45/87 (51.72%), Postives = 66/87 (75.86%), Query Frame = 1
Query: 31 NPFDPKERMVKRLIAVGGDYVRPLGSRH--EILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLPE 285
+P + KER +KR+I + GD+V G RH ++ RVPQG CWVEGDNP S DSN FGP+PL L++ ++TH++WPP+R+G +++ +PE
Sbjct: 77 SPQNHKERHIKRIIGLPGDWV---GIRHSSDVFRVPQGHCWVEGDNPASSMDSNTFGPVPLGLVQGRVTHIVWPPQRLGAVEKRVPE 160
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A6P4APA3_ZIZJJ (Mitochondrial inner membrane protease subunit 2 n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4APA3_ZIZJJ) HSP 1 Score: 107 bits (266), Expect = 7.370e-25 Identity = 44/86 (51.16%), Postives = 66/86 (76.74%), Query Frame = 1
Query: 31 NPFDPKERMVKRLIAVGGDYVRPLGSRH--EILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLP 282
+P + KE+ +KR+IA+ GD++ G RH ++LR+P G CWVEGDNP S DSN FGPIPL L++ ++TH++WPP+RIG +++ +P
Sbjct: 81 SPSNHKEKHIKRVIALPGDWI---GIRHTSDVLRIPDGHCWVEGDNPSSSMDSNSFGPIPLGLVKGRVTHIVWPPQRIGAVEKRIP 163
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A8K0HBZ9_9ROSA (Uncharacterized protein n=2 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HBZ9_9ROSA) HSP 1 Score: 106 bits (265), Expect = 9.280e-25 Identity = 46/98 (46.94%), Postives = 71/98 (72.45%), Query Frame = 1
Query: 1 CFLRRGRSHRN--PFDPKERMVKRLIAVGGDYVRPLGSRH--EILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLP 282
C ++ SH + P + KE+ +KR+IA+ GD++ G RH ++ R+P+G CWVEGDNP S DSN FGPIPL L++ ++TH++WPP+RIG +++ +P
Sbjct: 65 CLVKYKFSHGDVLPSNHKEKHIKRIIALPGDWI---GIRHCSDVRRIPEGHCWVEGDNPSSSMDSNSFGPIPLGLVKGRVTHIVWPPQRIGAVEKRIP 159
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Match: A0A3S3QY08_9MAGN (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3QY08_9MAGN) HSP 1 Score: 108 bits (271), Expect = 2.040e-24 Identity = 49/85 (57.65%), Postives = 66/85 (77.65%), Query Frame = 1
Query: 28 RNPFDPKERMVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPLALIEAKITHVLWPPRRIGPLDQNLP 282
R+P + KE +VKRLIA+ GD++R SR EIL++PQG CWVEGDN S DS FGPIPLALI+ + +HV+WPP+R+G +++ LP
Sbjct: 196 RSPSNHKETLVKRLIALPGDWIRVPESR-EILKIPQGHCWVEGDNSTSSLDSRSFGPIPLALIQGRASHVIWPPQRMGEVERKLP 279 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52007.12484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52007.12484.1 >prot_H-elongata_contig52007.12484.1 ID=prot_H-elongata_contig52007.12484.1|Name=mRNA_H-elongata_contig52007.12484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp MVKRLIAVGGDYVRPLGSRHEILRVPQGSCWVEGDNPRFSGDSNQFGPIPback to top mRNA from alignment at H-elongata_contig52007:1181..2645- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52007.12484.1 ID=mRNA_H-elongata_contig52007.12484.1|Name=mRNA_H-elongata_contig52007.12484.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1465bp|location=Sequence derived from alignment at H-elongata_contig52007:1181..2645- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52007:1181..2645- >mRNA_H-elongata_contig52007.12484.1 ID=mRNA_H-elongata_contig52007.12484.1|Name=mRNA_H-elongata_contig52007.12484.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig52007:1181..2645- (Himanthalia elongata Himel1 dioecious)back to top |