mRNA_H-elongata_contig51902.12471.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51902.12471.1
Unique NamemRNA_H-elongata_contig51902.12471.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51902.12471.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.830e-28
Identity = 67/144 (46.53%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    1 KGQHGVGLAIKEETVNKAGKDDIAIECISARLLKARISI-KPNFVTFVVAYAPTE--EATEG----QKSKYIAALKNTVSSVSAREYVFILTDANARTGKRGEGGGEAESKVLGAYDRDVLNGNGKLLLSFAEDNKLTLLNTRF 411
            +G HGVG+AIKE      G++   +ECIS RL+KAR+ I +   VTFVV YAPTE    T G     K  +  AL   +  V +R+++ +L DANARTG+R EG    ++K++GAY RD++N NG+ LL  A DN+L+L NT F
Sbjct:   48 RGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTGRRREGC--CDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 189          
BLAST of mRNA_H-elongata_contig51902.12471.1 vs. uniprot
Match: A0A6H5JVI3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.920e-26
Identity = 64/144 (44.44%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 KGQHGVGLAIKEETVNKAGKDDIAIECISARLLKARISI-KPNFVTFVVAYAPTE--EATEG----QKSKYIAALKNTVSSVSAREYVFILTDANARTGKRGEGGGEAESKVLGAYDRDVLNGNGKLLLSFAEDNKLTLLNTRF 411
            +G HGVG+AIKE      G++   +ECIS RL+K R+ I +   VTFVV YAPTE    T G     K  +  AL   +  V +R+++ +  DANARTG+R  G    ++K++GAY+RD++N NG+ LL  A DN+L+L NT F
Sbjct:  165 RGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLIVPMDANARTGRRRHGC--CDAKIMGAYERDIINNNGERLLGLASDNQLSLTNTYF 306          
BLAST of mRNA_H-elongata_contig51902.12471.1 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.450e-23
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    1 KGQHGVGLAIKEETVNKAGKDDIAIECISARLLKARISI-KPNFVTFVVAYAPTE--EATEG----QKSKYIAALKNTVSSVSAREYVFILTDANARTGKRGEGGGEAESKVLGAYDRDVLNGNGKLLLSFAEDNKLTLLNTRF 411
            +G HGVG+AIKE      G++   +ECIS RL+K  + + +   VTFVV YAP E    T G     K     AL   +  + + +Y+ +L DANARTG+R +G    ++K++GAY RD++N NG+ LL  A DN+L+L NT F
Sbjct:  538 RGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVCLQLGRTCGVTFVVGYAPAETVRTTAGGDVNAKDSSWTALDAAIREIHSCDYLVVLMDANARTGRRRDGC--CDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 679          
BLAST of mRNA_H-elongata_contig51902.12471.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.250e-20
Identity = 62/138 (44.93%), Postives = 85/138 (61.59%), Query Frame = 1
Query:    4 GQHGVGLAIKEETVNKAGKDDIAIECISARLLKARISIKPN--FVTFVVAYAPTEEATEGQKSKYIAALKNTVSSVSAREYVFILTDANARTGKRGEGGGEAESKVLGAYDRDVLNGNGKLLLSFAEDNKLTLLNTRF 411
            G HGVG+A+ EET+ K+ +     E +  RL+  R  +  +   VTFV AYAPT+ AT   K  +   L + V    A+EY+F+L DANA+TG  G   GE E + +G Y R+ LN NG+LLL+FA DN+L +LNT F
Sbjct:  139 GTHGVGIAV-EETLCKSSQ--YTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG--GGIAGENE-RTMGEYGRNELNDNGRLLLTFATDNRLAVLNTFF 270          
BLAST of mRNA_H-elongata_contig51902.12471.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.830e-20
Identity = 62/138 (44.93%), Postives = 85/138 (61.59%), Query Frame = 1
Query:    4 GQHGVGLAIKEETVNKAGKDDIAIECISARLLKARISIKPN--FVTFVVAYAPTEEATEGQKSKYIAALKNTVSSVSAREYVFILTDANARTGKRGEGGGEAESKVLGAYDRDVLNGNGKLLLSFAEDNKLTLLNTRF 411
            G HGVG+A+ EET+ K+ +     E +  RL+  R  +  +   VTFV AYAPT+ AT   K  +   L + V  + A+EY+F+L DANA+TG  G   GE E   +G Y R+ LN NG+LLL+FA DN+L +LNT F
Sbjct:  371 GTHGVGIAV-EETLCKSSQ--YTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTG--GGIAGENEG-TMGEYGRNELNENGELLLTFATDNRLAVLNTFF 502          
BLAST of mRNA_H-elongata_contig51902.12471.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.390e-20
Identity = 58/138 (42.03%), Postives = 80/138 (57.97%), Query Frame = 1
Query:    4 GQHGVGLAIKEETVNKAGKDDIAIECISARLLKARISIKPN--FVTFVVAYAPTEEATEGQKSKYIAALKNTVSSVSAREYVFILTDANARTGKRGEGGGEAESKVLGAYDRDVLNGNGKLLLSFAEDNKLTLLNTRF 411
            G HGVG+A+KE     +       E I  RL+  R+ +  +   V FV A APTE +T   K  +   L + V  + ++E V++L DANARTG R +GG   + +V+G Y RD LN NG LLL+FA +N+L L NT F
Sbjct:  123 GVHGVGIAVKESLCKTS---TFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDRLDGG---DGRVIGMYGRDELNDNGMLLLNFATENRLALTNTFF 254          
BLAST of mRNA_H-elongata_contig51902.12471.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.150e-20
Identity = 61/138 (44.20%), Postives = 84/138 (60.87%), Query Frame = 1
Query:    4 GQHGVGLAIKEETVNKAGKDDIAIECISARLLKARISIKPN--FVTFVVAYAPTEEATEGQKSKYIAALKNTVSSVSAREYVFILTDANARTGKRGEGGGEAESKVLGAYDRDVLNGNGKLLLSFAEDNKLTLLNTRF 411
            G HGVG+A+ EE + KA +     E +  RL+  R  +  +   V FV AYAPT+ AT   K  +   L + V  + A+EY+F+L DANA+TG  G   GE E + +G Y R+ LN NG+LLL+FA DN+L +LNT F
Sbjct:  109 GTHGVGIAV-EEALCKASQ--YTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKEYLFVLMDANAQTG--GGIAGENE-RTMGEYGRNELNDNGRLLLTFATDNRLAVLNTFF 240          
BLAST of mRNA_H-elongata_contig51902.12471.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 4.560e-20
Identity = 62/138 (44.93%), Postives = 84/138 (60.87%), Query Frame = 1
Query:    4 GQHGVGLAIKEETVNKAGKDDIAIECISARLLKARISIKPN--FVTFVVAYAPTEEATEGQKSKYIAALKNTVSSVSAREYVFILTDANARTGKRGEGGGEAESKVLGAYDRDVLNGNGKLLLSFAEDNKLTLLNTRF 411
            G HGVG+A+ EET+ K+ +     E +  RL+  R  +  +   VTFV AYAPT+ AT   K  +   L + V    A+EY+F+L DANA+TG  G   GE E   +G Y R+ LN NG+LLL+FA DN+L +LNT F
Sbjct:   84 GTHGVGIAV-EETLCKSSQ--YTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG--GGIAGENEG-TMGEYGRNELNENGELLLTFATDNRLAVLNTFF 215          
BLAST of mRNA_H-elongata_contig51902.12471.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 4.660e-20
Identity = 62/138 (44.93%), Postives = 84/138 (60.87%), Query Frame = 1
Query:    4 GQHGVGLAIKEETVNKAGKDDIAIECISARLLKARISIKPN--FVTFVVAYAPTEEATEGQKSKYIAALKNTVSSVSAREYVFILTDANARTGKRGEGGGEAESKVLGAYDRDVLNGNGKLLLSFAEDNKLTLLNTRF 411
            G HGVG+A+ EET+ K+ +     E +  RL+  R  +  +   VTFV AYAPT+ AT   K  +   L + V    A+EY+F+L DANA+TG  G   GE E   +G Y R+ LN NG+LLL+FA DN+L +LNT F
Sbjct:  575 GTHGVGIAV-EETLCKSSQ--YTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG--GGIAGENEG-TMGEYGRNELNENGELLLTFATDNRLAVLNTFF 706          
BLAST of mRNA_H-elongata_contig51902.12471.1 vs. uniprot
Match: A0A6H5L3X5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X5_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 9.660e-20
Identity = 61/138 (44.20%), Postives = 82/138 (59.42%), Query Frame = 1
Query:    4 GQHGVGLAIKEETVNKAGKDDIAIECISARLLKARISIKPN--FVTFVVAYAPTEEATEGQKSKYIAALKNTVSSVSAREYVFILTDANARTGKRGEGGGEAESKVLGAYDRDVLNGNGKLLLSFAEDNKLTLLNTRF 411
            G HGVG+A+ EE + KA +     E +  RL+  R  +  +   V FV AYAPT+ AT   K  +   L + V  + A+E VF+L DANA+TG  G   GE E   +G Y R+ LN NG+LLL+FA DN+L +LNT F
Sbjct:  170 GTHGVGIAV-EEALCKASQ--YTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKECVFVLMDANAQTG--GGIAGENEG-TMGEYGRNELNDNGRLLLTFATDNRLAVLNTFF 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51902.12471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JUT2_9PHAE1.830e-2846.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVI3_9PHAE3.920e-2644.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JD10_9PHAE1.450e-2342.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQZ7_9PHAE1.250e-2044.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K319_9PHAE1.830e-2044.93Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JBD7_9PHAE2.390e-2042.03Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9G5_9PHAE3.150e-2044.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7U5_9PHAE4.560e-2044.93Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE4.660e-2044.93Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L3X5_9PHAE9.660e-2044.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51902contigH-elongata_contig51902:874..1284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.6
Seed ortholog evalue1e-08
Seed eggNOG ortholog8479.XP_005314530.1
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs39VM0@33154,3BPUP@33208,3D6HY@33213,48ETK@7711,49BUS@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.6577313-CDS-H-elongata_contig51902:873..12841622930848.6577313-CDS-H-elongata_contig51902:873..1284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51902 874..1284 -
1691679596.4251392-CDS-H-elongata_contig51902:873..12841691679596.4251392-CDS-H-elongata_contig51902:873..1284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51902 874..1284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51902.12471.1prot_H-elongata_contig51902.12471.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51902 874..1284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51902.12471.1

>prot_H-elongata_contig51902.12471.1 ID=prot_H-elongata_contig51902.12471.1|Name=mRNA_H-elongata_contig51902.12471.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
KGQHGVGLAIKEETVNKAGKDDIAIECISARLLKARISIKPNFVTFVVAY
APTEEATEGQKSKYIAALKNTVSSVSAREYVFILTDANARTGKRGEGGGE
AESKVLGAYDRDVLNGNGKLLLSFAEDNKLTLLNTRF
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mRNA from alignment at H-elongata_contig51902:874..1284-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51902.12471.1 ID=mRNA_H-elongata_contig51902.12471.1|Name=mRNA_H-elongata_contig51902.12471.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig51902:874..1284- (Himanthalia elongata Himel1 dioecious)
AAGGGGCAACATGGGGTGGGACTAGCGATAAAGGAGGAGACCGTTAACAA GGCCGGTAAGGACGACATCGCAATCGAGTGTATCAGCGCACGTCTCCTGA AGGCTCGAATATCGATTAAACCTAACTTTGTTACATTTGTGGTAGCCTAC GCTCCGACCGAGGAAGCGACGGAGGGGCAAAAGTCCAAGTACATCGCAGC CCTAAAAAACACCGTGTCGTCAGTGTCCGCTCGGGAATACGTCTTCATTT TGACCGACGCAAATGCCAGGACAGGAAAAAGGGGCGAGGGGGGCGGGGAA GCAGAAAGCAAGGTATTGGGCGCATATGACCGAGACGTGCTAAACGGAAA CGGCAAACTCCTGCTGAGTTTCGCAGAAGACAACAAACTCACTCTTCTGA ACACACGTTTT
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Coding sequence (CDS) from alignment at H-elongata_contig51902:874..1284-

>mRNA_H-elongata_contig51902.12471.1 ID=mRNA_H-elongata_contig51902.12471.1|Name=mRNA_H-elongata_contig51902.12471.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig51902:874..1284- (Himanthalia elongata Himel1 dioecious)
AAGGGGCAACATGGGGTGGGACTAGCGATAAAGGAGGAGACCGTTAACAA
GGCCGGTAAGGACGACATCGCAATCGAGTGTATCAGCGCACGTCTCCTGA
AGGCTCGAATATCGATTAAACCTAACTTTGTTACATTTGTGGTAGCCTAC
GCTCCGACCGAGGAAGCGACGGAGGGGCAAAAGTCCAAGTACATCGCAGC
CCTAAAAAACACCGTGTCGTCAGTGTCCGCTCGGGAATACGTCTTCATTT
TGACCGACGCAAATGCCAGGACAGGAAAAAGGGGCGAGGGGGGCGGGGAA
GCAGAAAGCAAGGTATTGGGCGCATATGACCGAGACGTGCTAAACGGAAA
CGGCAAACTCCTGCTGAGTTTCGCAGAAGACAACAAACTCACTCTTCTGA
ACACACGTTTTAAGGGGCAACATGGGGTGGGACTAGCGATAAAGGAGGAG
ACCGTTAACAAGGCCGGTAAGGACGACATCGCAATCGAGTGTATCAGCGC
ACGTCTCCTGAAGGCTCGAATATCGATTAAACCTAACTTTGTTACATTTG
TGGTAGCCTACGCTCCGACCGAGGAAGCGACGGAGGGGCAAAAGTCCAAG
TACATCGCAGCCCTAAAAAACACCGTGTCGTCAGTGTCCGCTCGGGAATA
CGTCTTCATTTTGACCGACGCAAATGCCAGGACAGGAAAAAGGGGCGAGG
GGGGCGGGGAAGCAGAAAGCAAGGTATTGGGCGCATATGACCGAGACGTG
CTAAACGGAAACGGCAAACTCCTGCTGAGTTTCGCAGAAGACAACAAACT
CACTCTTCTGAACACACGTTTT
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