mRNA_H-elongata_contig51871.12467.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51871.12467.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE) HSP 1 Score: 110 bits (274), Expect = 3.660e-26 Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 1 TFSVSYIPPGEVTIKRIGLTTRAFPGSHTANDVEYWLKKITKEWFSKLVKDRVEPSDVFLAFTVDQGYNVMNAIEALNVPVVVCNAHRL 267
TF+VSY+ G+ + R+ L TRAFPGSHTA+D++ W++ +T E+F+ L+ VE DVFLAFTVDQG NV+NA AL VPVV CN HR+
Sbjct: 113 TFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRV 201
BLAST of mRNA_H-elongata_contig51871.12467.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE) HSP 1 Score: 110 bits (274), Expect = 3.890e-26 Identity = 49/89 (55.06%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 1 TFSVSYIPPGEVTIKRIGLTTRAFPGSHTANDVEYWLKKITKEWFSKLVKDRVEPSDVFLAFTVDQGYNVMNAIEALNVPVVVCNAHRL 267
TF+VSY+ G + R+ L RAFPG+HTA+D+ W++++T+E+F+ + + VEP DVFLAFTVDQG NV+NA +AL VPVV CN HR+
Sbjct: 302 TFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRV 390
BLAST of mRNA_H-elongata_contig51871.12467.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.280e-25 Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 1 TFSVSYIPPGEVTIKRIGLTTRAFPGSHTANDVEYWLKKITKEWFSKLVKDRVEPSDVFLAFTVDQGYNVMNAIEALNVPVVVCNAHRL 267
TF+V+++ G+ + RI L RAFPGSHTA D++ W++K+T E+FS + + V+PSDVFLAFTVDQG N++NA AL V VV CN HRL
Sbjct: 109 TFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRL 197
BLAST of mRNA_H-elongata_contig51871.12467.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.350e-25 Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 1 TFSVSYIPPGEVTIKRIGLTTRAFPGSHTANDVEYWLKKITKEWFSKLVKDRVEPSDVFLAFTVDQGYNVMNAIEALNVPVVVCNAHRL 267
TF+V+++ G+ + RI L RAFPGSHTA D++ W++K+T E+FS + + V+PSDVFLAFTVDQG N++NA AL V VV CN HRL
Sbjct: 304 TFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRL 392
BLAST of mRNA_H-elongata_contig51871.12467.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE) HSP 1 Score: 107 bits (268), Expect = 2.380e-25 Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 1
Query: 1 TFSVSYIPPGEVTIKRIGLTTRAFPGSHTANDVEYWLKKITKEWFSKLVKDRVEPSDVFLAFTVDQGYNVMNAIEALNVPVVVCNAHRL 267
TF+VSY+ G+ + R+ L TRAFPGSHTA+D++ W++ +T E+ + L+ VE DVFLAFTVDQG NV+NA AL VPVV CN HR+
Sbjct: 113 TFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRV 201
BLAST of mRNA_H-elongata_contig51871.12467.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE) HSP 1 Score: 107 bits (267), Expect = 3.430e-25 Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 1 TFSVSYIPPGEVTIKRIGLTTRAFPGSHTANDVEYWLKK--------ITKEWFSKLVKDRVEPSDVFLAFTVDQGYNVMNAIEALNVPVVVCNAHRL 267
TFSVSYI TI R+GL TRAFPGSHTA D+E W++K +T E+F+ ++ + V+P DVFLAFTVDQG NV+NA L+V V+ CNAHRL
Sbjct: 284 TFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWIEKASFTTFKLLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRL 380
BLAST of mRNA_H-elongata_contig51871.12467.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE) HSP 1 Score: 104 bits (259), Expect = 3.380e-24 Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 1 TFSVSYIPPGEVT-IKRIGLTTRAFPGSHTANDVEYWLKKITKEWFSKLVKDRVEPSDVFLAFTVDQGYNVMNAIEALNVPVVVCNAHRL 267
TF+VSY+ G+ + R+ L TRAFPGSHTA D++ W++ +T E+F L+ V+P DVFL FTVDQG N++NA AL VPVV CN HR+
Sbjct: 109 TFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRV 198
BLAST of mRNA_H-elongata_contig51871.12467.1 vs. uniprot
Match: D7G7X8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X8_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 3.720e-11 Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 49 IGLTTRAFPGSHTANDVEYWLKKITKEWFSKLVKDRVEPSDVFLAFTVDQGYNVMNAIEALNVPVVVCNAHRL 267
+ L T+ F G HT ++ WL+++T F +V V PSDV++A TVDQG NV+NA ++L +P + C HR+
Sbjct: 60 LSLATKVFRGQHTQATIKTWLEQLTTGVFQSIVP-AVVPSDVYVAATVDQGLNVVNACKSLGIPTIPCLGHRI 131
BLAST of mRNA_H-elongata_contig51871.12467.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 1.340e-10 Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query: 115 KITKEWFSKLVKDRVEPSDVFLAFTVDQGYNVMNAIEALNVPVVVCNAHRL 267
++TKE+F + + VEPSDVFLAFTVDQG NV+NA AL V VV CN HR+
Sbjct: 6 QLTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRI 56
BLAST of mRNA_H-elongata_contig51871.12467.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 3.030e-9 Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 115 KITKEWFSKLVKDRVEPSDVFLAFTVDQGYNVMNAIEALNVPVVVCNAHRL 267
++T E+F+ ++ + V+P DVFLAFTVDQG NV+NA L+V V+ CNAHRL
Sbjct: 2 QLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRL 52 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51871.12467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51871.12467.1 >prot_H-elongata_contig51871.12467.1 ID=prot_H-elongata_contig51871.12467.1|Name=mRNA_H-elongata_contig51871.12467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp TFSVSYIPPGEVTIKRIGLTTRAFPGSHTANDVEYWLKKITKEWFSKLVKback to top mRNA from alignment at H-elongata_contig51871:3074..3527+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51871.12467.1 ID=mRNA_H-elongata_contig51871.12467.1|Name=mRNA_H-elongata_contig51871.12467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=454bp|location=Sequence derived from alignment at H-elongata_contig51871:3074..3527+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51871:3074..3527+ >mRNA_H-elongata_contig51871.12467.1 ID=mRNA_H-elongata_contig51871.12467.1|Name=mRNA_H-elongata_contig51871.12467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig51871:3074..3527+ (Himanthalia elongata Himel1 dioecious)back to top |