mRNA_H-elongata_contig51868.12466.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51868.12466.1
Unique NamemRNA_H-elongata_contig51868.12466.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51868.12466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51868contigH-elongata_contig51868:1023..3919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1929
Cds size1140
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.1836874-UTR-H-elongata_contig51868:1022..12061622930848.1836874-UTR-H-elongata_contig51868:1022..1206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51868 1023..1206 +
1691679596.2268977-UTR-H-elongata_contig51868:1022..12061691679596.2268977-UTR-H-elongata_contig51868:1022..1206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51868 1023..1206 +
1622930848.2005205-UTR-H-elongata_contig51868:1220..13751622930848.2005205-UTR-H-elongata_contig51868:1220..1375Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51868 1221..1375 +
1691679596.235054-UTR-H-elongata_contig51868:1220..13751691679596.235054-UTR-H-elongata_contig51868:1220..1375Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51868 1221..1375 +
1622930848.2692792-UTR-H-elongata_contig51868:3469..39191622930848.2692792-UTR-H-elongata_contig51868:3469..3919Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51868 3470..3919 +
1691679596.2836978-UTR-H-elongata_contig51868:3469..39191691679596.2836978-UTR-H-elongata_contig51868:3469..3919Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51868 3470..3919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.2156937-CDS-H-elongata_contig51868:1375..15391622930848.2156937-CDS-H-elongata_contig51868:1375..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51868 1376..1539 +
1691679596.242982-CDS-H-elongata_contig51868:1375..15391691679596.242982-CDS-H-elongata_contig51868:1375..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51868 1376..1539 +
1622930848.2269561-CDS-H-elongata_contig51868:2146..24491622930848.2269561-CDS-H-elongata_contig51868:2146..2449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51868 2147..2449 +
1691679596.2506647-CDS-H-elongata_contig51868:2146..24491691679596.2506647-CDS-H-elongata_contig51868:2146..2449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51868 2147..2449 +
1622930848.2408075-CDS-H-elongata_contig51868:2634..32821622930848.2408075-CDS-H-elongata_contig51868:2634..3282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51868 2635..3282 +
1691679596.2668314-CDS-H-elongata_contig51868:2634..32821691679596.2668314-CDS-H-elongata_contig51868:2634..3282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51868 2635..3282 +
1622930848.2543538-CDS-H-elongata_contig51868:3444..34691622930848.2543538-CDS-H-elongata_contig51868:3444..3469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51868 3445..3469 +
1691679596.2756991-CDS-H-elongata_contig51868:3444..34691691679596.2756991-CDS-H-elongata_contig51868:3444..3469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51868 3445..3469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51868.12466.1prot_H-elongata_contig51868.12466.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51868 1376..3469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51868.12466.1

>prot_H-elongata_contig51868.12466.1 ID=prot_H-elongata_contig51868.12466.1|Name=mRNA_H-elongata_contig51868.12466.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=380bp
MRSSGFCTATPEPSVGGQVGPSKVEEERIEGVKRTPPTTAPDGHNTGYGG
VISMRSRWMGEPALQAMMSTSTWDYFLTTDELGSFLGIEKDDLKPILSRM
SRSSSGDAAFLRTCGIRSVQFRNKIRYCLLGCGNLVTLGKELGDDLMAAE
PKPLYWGINRWGVDPATNIVAGFQSLRVVMIVSDLSKAIQASLKCRRCCG
GVGTGWSYMRRESIARMIISRGAPQELGLNFACEQCGCIHLGEPLPDTAV
RHLERSALSDATEVLLRTLPSLYKHDSGSSSKATGRSGGNTGNFQVERRN
SAYPPPKPHPSKAIATPPAQTQTHDAGSPQLTVPQHHLGADTLTLRTTYS
EADASVRGSVSGDGQEQVTVRSWEQPPKI*
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mRNA from alignment at H-elongata_contig51868:1023..3919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51868.12466.1 ID=mRNA_H-elongata_contig51868.12466.1|Name=mRNA_H-elongata_contig51868.12466.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2897bp|location=Sequence derived from alignment at H-elongata_contig51868:1023..3919+ (Himanthalia elongata Himel1 dioecious)
GCCAGCTAGACGTGGAGAAATCCCTAGGCCTGGAGAAGGGGGAGATCAGT
AGGTATTTTCAACGGTTGGGGCGGGGTCATAAGTCACCGAGAACACCCGA
GGCGCGCCGCCAGTTGAAGGCGGCGGGCGTATACCGCGTCAAAGGCCGCC
GATCGGGAAGATCACCTATAAATTGGTTGATCGCGTTCGCTGGTAAAGGT
AATCGAAAGCCCAAGTTCTTTCTTTCGGAACAGAGCCACCCGTTTGTGCC
GGAGCGCCTAGGAAAAGAACGAGTCGGCTCCTCAGCAGGTGCGCAGGTGC
GTACTGAAGGGGTGCAAAGCAGTCCTTCCACAGCTGGACCCGAGACAAGG
AAGATGAGGTCGAGTGGTTTTTGTACAGCGACACCTGAGCCGAGCGTAGG
GGGTCAAGTCGGACCATCGAAAGTTGAAGAGGAGCGGATCGAAGGGGTTA
AAAGGACCCCACCCACAACTGCACCAGACGGCCATAATACCGGATACGGT
GGTGTTATCAGTATGAGGTGGGCTTCGGACCGCTAGCTGTGCGTTGAACT
CCTGAAAACGACATTTTGTCCACACAGCACTTTTGTCCGGTGTGCCTGCA
ACTTTGTGAGTGATTGCTGATTGCTCTGACTTCTGTCCCGCGCAGTAAGG
ATTTTTATTTGGGTAGTAAAGGCTGCCGCACAGTGCTGTACAGGATTATT
GTGCGGCGTACAACCAAGCTCTTTGTGACCTCCTTTGGGAAATGTTTTGC
CTTTTCTTGTTTCCAAAGTTGTTGCTTGAGAGCGCGCAATCGTTTTGAAT
TCGGCAACGCGGTGGAGGTTACCCATCACCCATGTGTATAAAACGACAAA
TAGGCGTGCGCAGGTAACAGACGAACCACGCCCAAGTTTCTGCGTACGGT
CTATCGCATTTTAAGATTTTGCGTTGGACCATTGTCTGAGAGGATACTAT
AGGTACCATGTATTTTGTTTTCGTGTTTACCCCTGTTCGGTCAGTTTGGT
CTAAACCAGCGTATATTTTAGCACCACTCAAAATATATTTCTGGTATACA
CGCTATATTTGATACAAGTGGCCCTAAGACGGCAACGCTAAACAAATATT
GTTTGCGCGTGCGGCCCAACATAGGTCACGTTGGATGGGAGAACCGGCGT
TACAGGCGATGATGTCGACAAGCACGTGGGATTACTTTTTGACCACCGAT
GAGCTCGGGAGCTTCCTGGGTATAGAAAAAGATGATCTCAAACCGATCTT
GTCCCGAATGTCGCGGAGCAGCTCCGGTGACGCCGCCTTCTTGCGCACGT
GTGGTATCAGGAGTGTGCAGTTCAGGAACAAGATTAGGTATTGCCTCCTT
GGCTGCGGCAACCTTGTAACCCTCGGAAAAGAACTTGGCGACGACCTCAT
GGCCGCGGAGCCAAAGCCCTTGTACTGGTGAGTGACTTATGGCGTGATCT
CATAGGATTTAGCACTGCCCAAGAGTATATCCAAATCTCAACTTCGGTCC
TGTCTTTTGACTAACTATTAGTTGGTTCAGTGGGTGTTTATGGAGATACC
CCCGTGGTGTGAGGCTTAAACACATCTAACCAAACACGTGCTATGTGATA
TCGTGTGCGCAGGGGCATAAACAGATGGGGGGTAGACCCGGCTACAAATA
TCGTGGCAGGGTTTCAATCTCTCCGCGTGGTCATGATCGTGTCCGATCTC
TCGAAAGCGATACAGGCGTCGTTGAAGTGTCGGCGATGTTGCGGTGGGGT
GGGAACTGGGTGGTCGTACATGCGTCGCGAATCCATAGCTCGCATGATCA
TCTCGAGAGGAGCACCCCAAGAGCTAGGGCTGAATTTTGCTTGCGAACAG
TGCGGTTGCATCCATTTGGGGGAGCCGCTGCCGGATACCGCTGTGAGACA
CTTAGAAAGGTCAGCCCTATCTGACGCTACTGAGGTTTTATTGAGGACCC
TCCCTAGTTTGTATAAGCATGATTCGGGCAGCTCCTCCAAAGCCACGGGC
CGTTCGGGCGGCAACACCGGTAACTTTCAGGTCGAAAGGAGAAACTCCGC
TTATCCGCCACCGAAGCCACACCCGTCAAAAGCCATCGCCACACCCCCAG
CCCAAACCCAAACCCATGACGCTGGAAGCCCACAACTTACAGTGCCACAG
CACCACCTGGGGGCTGACACCCTCACCCTGCGTACCACTTATTCTGAGGC
CGACGCCAGCGTCAGAGGAAGCGTTTCAGGGGACGGACAAGAACAAGTCA
CCGTAAGAAGGTGATTCTTGTCGGATCAAGATTCACATTTACTAACGTGG
AAACAGCGAAATGTCACTAGCTCAGCTTGTTGGTGTGTAAACTGCGTCGC
GGTATTGACTTTGACGCCGCCACGTTGCCCGCGCAAATTCGCCGACGGAC
ATGCTGGGAGCAACTATCGCAGTTGGGAGCAACCCCCGAAGATCTGAGGG
AGAAGCGACTGCGAACTTAAAAGGTGCGCGTCGGCGTGACAAAGCGCAAC
CCAGAGTTAACAAAGCACCGTCGTCGAGGTGCCATGCTTGCAGGAAACGA
GGAATCCCGGAAGATTTCTTGACAACACAAAAATATTACAAGAAAAGGGA
AAAGACTTGCGAGGCTGCTGAACTGGCTTGATCCGCGAGTGGAAGCAGAT
CCGGCTCGGGGGCAGAGGACGCGACCGTATGAAGGGGGTTTTCCGTTTAT
TTCCTATGTGATACCGTATAGCCTTGTTTCGTTTGGGCCGAGGATCGACG
CGTTTCAAGTGTGAGTTTTGTTTTTCTAAAGCTGTTTCTTCTCGACACTC
TTGTTTTTCGACCTTGTAGTCGGCAAGGAGTGGCGGTTTGGCGACGAAAG
AAGCCGACCTTGAGGAGCTGTAAATAAGATATTCGACACACCACGAC
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Coding sequence (CDS) from alignment at H-elongata_contig51868:1023..3919+

>mRNA_H-elongata_contig51868.12466.1 ID=mRNA_H-elongata_contig51868.12466.1|Name=mRNA_H-elongata_contig51868.12466.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2280bp|location=Sequence derived from alignment at H-elongata_contig51868:1023..3919+ (Himanthalia elongata Himel1 dioecious)
ATGAGGTCGAGTGGTTTTTGTACAGCGACACCTGAGCCGAGCGTAGGGGG
TCAAGTCGGACCATCGAAAGTTGAAGAGGAGCGGATCGAAGGGGTTAAAA
GGACCCCACCCACAACTGCACCAGACGGCCATAATACCGGATACGGTGGT
GTTATCAGTATGAGATGAGGTCGAGTGGTTTTTGTACAGCGACACCTGAG
CCGAGCGTAGGGGGTCAAGTCGGACCATCGAAAGTTGAAGAGGAGCGGAT
CGAAGGGGTTAAAAGGACCCCACCCACAACTGCACCAGACGGCCATAATA
CCGGATACGGTGGTGTTATCAGTATGAGGTCACGTTGGATGGGAGAACCG
GCGTTACAGGCGATGATGTCGACAAGCACGTGGGATTACTTTTTGACCAC
CGATGAGCTCGGGAGCTTCCTGGGTATAGAAAAAGATGATCTCAAACCGA
TCTTGTCCCGAATGTCGCGGAGCAGCTCCGGTGACGCCGCCTTCTTGCGC
ACGTGTGGTATCAGGAGTGTGCAGTTCAGGAACAAGATTAGGTATTGCCT
CCTTGGCTGCGGCAACCTTGTAACCCTCGGAAAAGAACTTGGCGACGACC
TCATGGCCGCGGAGCCAAAGCCCTTGTACTGGTCACGTTGGATGGGAGAA
CCGGCGTTACAGGCGATGATGTCGACAAGCACGTGGGATTACTTTTTGAC
CACCGATGAGCTCGGGAGCTTCCTGGGTATAGAAAAAGATGATCTCAAAC
CGATCTTGTCCCGAATGTCGCGGAGCAGCTCCGGTGACGCCGCCTTCTTG
CGCACGTGTGGTATCAGGAGTGTGCAGTTCAGGAACAAGATTAGGTATTG
CCTCCTTGGCTGCGGCAACCTTGTAACCCTCGGAAAAGAACTTGGCGACG
ACCTCATGGCCGCGGAGCCAAAGCCCTTGTACTGGGGCATAAACAGATGG
GGGGTAGACCCGGCTACAAATATCGTGGCAGGGTTTCAATCTCTCCGCGT
GGTCATGATCGTGTCCGATCTCTCGAAAGCGATACAGGCGTCGTTGAAGT
GTCGGCGATGTTGCGGTGGGGTGGGAACTGGGTGGTCGTACATGCGTCGC
GAATCCATAGCTCGCATGATCATCTCGAGAGGAGCACCCCAAGAGCTAGG
GCTGAATTTTGCTTGCGAACAGTGCGGTTGCATCCATTTGGGGGAGCCGC
TGCCGGATACCGCTGTGAGACACTTAGAAAGGTCAGCCCTATCTGACGCT
ACTGAGGTTTTATTGAGGACCCTCCCTAGTTTGTATAAGCATGATTCGGG
CAGCTCCTCCAAAGCCACGGGCCGTTCGGGCGGCAACACCGGTAACTTTC
AGGTCGAAAGGAGAAACTCCGCTTATCCGCCACCGAAGCCACACCCGTCA
AAAGCCATCGCCACACCCCCAGCCCAAACCCAAACCCATGACGCTGGAAG
CCCACAACTTACAGTGCCACAGCACCACCTGGGGGCTGACACCCTCACCC
TGCGTACCACTTATTCTGAGGCCGACGCCAGCGTCAGAGGAAGCGTTTCA
GGGGACGGACAAGAACAAGTCACCGTAAGAAGGGGCATAAACAGATGGGG
GGTAGACCCGGCTACAAATATCGTGGCAGGGTTTCAATCTCTCCGCGTGG
TCATGATCGTGTCCGATCTCTCGAAAGCGATACAGGCGTCGTTGAAGTGT
CGGCGATGTTGCGGTGGGGTGGGAACTGGGTGGTCGTACATGCGTCGCGA
ATCCATAGCTCGCATGATCATCTCGAGAGGAGCACCCCAAGAGCTAGGGC
TGAATTTTGCTTGCGAACAGTGCGGTTGCATCCATTTGGGGGAGCCGCTG
CCGGATACCGCTGTGAGACACTTAGAAAGGTCAGCCCTATCTGACGCTAC
TGAGGTTTTATTGAGGACCCTCCCTAGTTTGTATAAGCATGATTCGGGCA
GCTCCTCCAAAGCCACGGGCCGTTCGGGCGGCAACACCGGTAACTTTCAG
GTCGAAAGGAGAAACTCCGCTTATCCGCCACCGAAGCCACACCCGTCAAA
AGCCATCGCCACACCCCCAGCCCAAACCCAAACCCATGACGCTGGAAGCC
CACAACTTACAGTGCCACAGCACCACCTGGGGGCTGACACCCTCACCCTG
CGTACCACTTATTCTGAGGCCGACGCCAGCGTCAGAGGAAGCGTTTCAGG
GGACGGACAAGAACAAGTCACCGTAAGAAGTTGGGAGCAACCCCCGAAGA
TCTGATTGGGAGCAACCCCCGAAGATCTGA
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