mRNA_H-elongata_contig51845.12465.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51845.12465.1
Unique NamemRNA_H-elongata_contig51845.12465.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51845.12465.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.120e-6
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 PQIAAKDIRKCLPARFDGRDKTFLEAEAAIDPLLNNTPP 117
            PQI  KDIRKCLPA+F+G D+  L AE A+ PL N+ PP
Sbjct:  464 PQIDPKDIRKCLPAKFEGTDEDHLNAEMALYPLSNDAPP 502
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BLAST of mRNA_H-elongata_contig51845.12465.1 vs. uniprot
Match: A0A6H5KA20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA20_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 5.170e-6
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 PQIAAKDIRKCLPARFDGRDKTFLEAEAAIDPLLNNTPP 117
            P+I +  I++CLPARF G ++  L AE A+DPL N TPP
Sbjct:   19 PRIESNSIKECLPARFKGTNQDLLNAEMALDPLENKTPP 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51845.12465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8W6_9PHAE5.120e-661.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KA20_9PHAE5.170e-653.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51845contigH-elongata_contig51845:3446..4036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size592
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.1236668-UTR-H-elongata_contig51845:3445..37271622930848.1236668-UTR-H-elongata_contig51845:3445..3727Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51845 3446..3727 +
1691679596.2075999-UTR-H-elongata_contig51845:3445..37271691679596.2075999-UTR-H-elongata_contig51845:3445..3727Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51845 3446..3727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.141685-CDS-H-elongata_contig51845:3727..40361622930848.141685-CDS-H-elongata_contig51845:3727..4036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51845 3728..4036 +
1691679596.218319-CDS-H-elongata_contig51845:3727..40361691679596.218319-CDS-H-elongata_contig51845:3727..4036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51845 3728..4036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51845.12465.1prot_H-elongata_contig51845.12465.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51845 3728..4036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51845.12465.1

>prot_H-elongata_contig51845.12465.1 ID=prot_H-elongata_contig51845.12465.1|Name=mRNA_H-elongata_contig51845.12465.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MCAGGDSNGMRISIDMLHFGSPYPIVPAPYIRGDLSRRLLLVVQFARISE
KGSFSIHTLSIWSTLPISPVVLSSRSILKHREEGRKGKLGLKEDRVLAPI
GVP
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mRNA from alignment at H-elongata_contig51845:3446..4036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51845.12465.1 ID=mRNA_H-elongata_contig51845.12465.1|Name=mRNA_H-elongata_contig51845.12465.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=591bp|location=Sequence derived from alignment at H-elongata_contig51845:3446..4036+ (Himanthalia elongata Himel1 dioecious)
CCTCAGATCGCCGCCAAGGATATTCGCAAGTGTCTCCCGGCGCGGTTCGA
CGGAAGAGACAAGACTTTCCTCGAGGCAGAGGCCGCGATCGACCCCCTGC
TCAACAACACCCCTCCCACCAGGGATGACGTCGACCTAGACGACGAATAG
ATAACACAGGGCAGCCTTAATTTTGTGGATATATGCAGCAACCACCAATC
GGTTACCAACGCAGGGGTAGGAGGTTAACAACACGCTGTGTAGGTTTATT
TTGCTGTTTACCAACCCTGAAGTTTTTAAGATATGTGCGCGGGCGGTGAT
AGCAACGGTATGAGAATTAGTATTGACATGCTGCATTTTGGGTCTCCATA
TCCCATAGTACCAGCACCATATATCCGAGGGGATTTATCACGTCGCTTGT
TGCTGGTGGTGCAATTCGCCCGGATCAGTGAGAAGGGGTCGTTCTCGATT
CACACCCTTAGCATATGGTCAACTCTACCGATTTCGCCTGTTGTGCTCTC
AAGTAGATCGATACTAAAACATCGAGAGGAAGGAAGGAAGGGAAAGCTCG
GCTTGAAAGAGGACAGAGTTCTCGCACCAATCGGCGTCCCT
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Coding sequence (CDS) from alignment at H-elongata_contig51845:3446..4036+

>mRNA_H-elongata_contig51845.12465.1 ID=mRNA_H-elongata_contig51845.12465.1|Name=mRNA_H-elongata_contig51845.12465.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig51845:3446..4036+ (Himanthalia elongata Himel1 dioecious)
ATGTGCGCGGGCGGTGATAGCAACGGTATGAGAATTAGTATTGACATGCT
GCATTTTGGGTCTCCATATCCCATAGTACCAGCACCATATATCCGAGGGG
ATTTATCACGTCGCTTGTTGCTGGTGGTGCAATTCGCCCGGATCAGTGAG
AAGGGGTCGTTCTCGATTCACACCCTTAGCATATGGTCAACTCTACCGAT
TTCGCCTGTTGTGCTCTCAAGTAGATCGATACTAAAACATCGAGAGGAAG
GAAGGAAGGGAAAGCTCGGCTTGAAAGAGGACAGAGTTCTCGCACCAATC
GGCGTCCCTATGTGCGCGGGCGGTGATAGCAACGGTATGAGAATTAGTAT
TGACATGCTGCATTTTGGGTCTCCATATCCCATAGTACCAGCACCATATA
TCCGAGGGGATTTATCACGTCGCTTGTTGCTGGTGGTGCAATTCGCCCGG
ATCAGTGAGAAGGGGTCGTTCTCGATTCACACCCTTAGCATATGGTCAAC
TCTACCGATTTCGCCTGTTGTGCTCTCAAGTAGATCGATACTAAAACATC
GAGAGGAAGGAAGGAAGGGAAAGCTCGGCTTGAAAGAGGACAGAGTTCTC
GCACCAATCGGCGTCCCT
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