mRNA_H-elongata_contig51845.12464.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51845.12464.1
Unique NamemRNA_H-elongata_contig51845.12464.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51845.12464.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 5.760e-47
Identity = 92/172 (53.49%), Postives = 114/172 (66.28%), Query Frame = 1
Query:    1 MKFGKFKMDVLDMRKELKVYGIPALGDNDLPDPGAAKGDLPFKMVKPGDLHPVASRTRAELSKAFVSRLYRRVWDSSPPDPSFFRDASILLTPPFNGGHYLTAFRLTEKDADSLPLSSLVTAPTTDDTVKEKLQGAWDGIKKRAVDAQREKQTRAASVDPQGP---FKRQRT 507
            MKFG+ KM+VLD  K LKV+ IP LG + LPD    K  LP KMV+P DLHPVA + R++L +A VSRLY RVWD +  DPSFF DAS LLTPPF+ GH+L+A +LT ++   LP  S+V APT+ + VKEKL G W  IK+ AV A +  Q+ A      G    FKR RT
Sbjct:  219 MKFGELKMEVLDPSKPLKVFDIPPLGQDGLPDREEQKKALPHKMVEPDDLHPVAKKARSKLGRALVSRLYGRVWDHNTLDPSFFCDASCLLTPPFSEGHHLSAMKLTAEEHAYLPAGSVVVAPTSYEEVKEKLDGVWTKIKQGAVKAVKTAQSEAEGSGGDGSGGLFKRART 390          
BLAST of mRNA_H-elongata_contig51845.12464.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.030e-44
Identity = 92/174 (52.87%), Postives = 113/174 (64.94%), Query Frame = 1
Query:    1 MKFGKFKMDVLDMRKELKVYGIPALGDNDLPDPGAAKGDLPFKMVKPGDLHPVASRTRAELSKAFVSRLYRRVWDSSPPDPSFFRDASILLTPPFNGGHYLTAFRLTEKDADSLPLSSLVTAPTTDDTVKEKLQGAWDGIKKRAVDAQREKQTRAASVDP-QG--PFKRQRTSG 513
            MKFG  KM VL+   +LKV+ IP LG++ LPD    K  LP KMV   +LHPVA + R EL +A VSR Y RVWD S  DPS F DA+ LLTPPF+ G+YL+A +LT ++ + L   S V APT+D+ V+EKL+G W  I KRAV A +    RAA     QG  PFKR RTSG
Sbjct:  250 MKFGMLKMGVLNSSADLKVFDIPPLGEDGLPDREEQKKPLPHKMVAHDELHPVAQKARNELCRALVSRFYGRVWDDSCLDPSMFCDAACLLTPPFSEGNYLSAMKLTAEEDEYLAAGSTVVAPTSDEDVREKLEGIWVEINKRAVTAVKTAHNRAAGEGGGQGLDPFKRARTSG 423          
BLAST of mRNA_H-elongata_contig51845.12464.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.880e-44
Identity = 88/174 (50.57%), Postives = 112/174 (64.37%), Query Frame = 1
Query:    1 MKFGKFKMDVLDMRKELKVYGIPALGDNDLPDPGAAKGDLPFKMVKPGDLHPVASRTRAELSKAFVSRLYRRVWDSSPPDPSFFRDASILLTPPFNGGHYLTAFRLTEKDADSLPLSSLVTAPTTDDTVKEKLQGAWDGIKKRAVDAQREKQTRAASVDPQG---PFKRQRTSG 513
            MKF   K +VLDM + L+V+ IPALG++ LP+ G  K  LP KMV    LHP  +  R EL +A +SRLY RVW+   P+PSFF DA+ LLTPPF+ G +++A RLT +DA  LP SS + APT D  V  KL  AW  I+KRAV++ + +Q RA   D  G   PFKR  TSG
Sbjct:  181 MKFATLKTNVLDMSEPLRVFDIPALGEDGLPNRGEQKKALPSKMVSADQLHPTTTLAREELCRALMSRLYERVWNEQSPNPSFFCDAACLLTPPFSEGRHVSAMRLTAEDAMYLPNSSNIIAPTADFEVTAKLDWAWTEIRKRAVESVKTEQDRAGGSDAGGGGGPFKRAHTSG 354          
BLAST of mRNA_H-elongata_contig51845.12464.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.520e-44
Identity = 92/174 (52.87%), Postives = 114/174 (65.52%), Query Frame = 1
Query:    1 MKFGKFKMDVLDMRKELKVYGIPALGDNDLPDPGAAKGDLPFKMVKPGDLHPVASRTRAELSKAFVSRLYRRVWDSSPPDPSFFRDASILLTPPFNGGHYLTAFRLTEKDADSLPLSSLVTAPTTDDTVKEKLQGAWDGIKKRAVDAQREKQTRAASVDP-QG--PFKRQRTSG 513
            MKFG  KM VL+   +LKV+ IP LG++ LPD    K  LP KMV   +LHPVA + R EL +A VSR Y RVWD S  DPS F DA+ LLTPPF+ G+Y +A +LT ++ + L   S V APT+D+ V+EKL+G W  IKKRA+ A +  Q RAA     QG  PFKR RTSG
Sbjct:  379 MKFGMLKMGVLNSSADLKVFDIPPLGEDGLPDREEQKKPLPHKMVAHDELHPVAQKARNELCRALVSRFYGRVWDDSCLDPSMFCDAACLLTPPFSEGNYPSAMKLTAEEDEYLAAGSTVVAPTSDEDVREKLEGIWAEIKKRAITAVKTAQNRAAGEGGGQGSDPFKRARTSG 552          
BLAST of mRNA_H-elongata_contig51845.12464.1 vs. uniprot
Match: A0A6H5JGB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB7_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.310e-43
Identity = 89/173 (51.45%), Postives = 113/173 (65.32%), Query Frame = 1
Query:    1 MKFGKFKMDVLDMRKELKVYGIPALGDNDLPDPGAAKGDLPFKMVKPGDLHPVASRTRAELSKAFVSRLYRRVWDSSPPDPSFFRDASILLTPPFNGGHYLTAFRLTEKDADSLPLSSLVTAPTTDDTVKEKLQGAWDGIKKRAVDAQREKQTRAASVDP---QGPFKRQRTS 510
            MKFG  KM VL   +ELKV+ +P LG++ LP+    K  LP KMV   DLHPVA + R +L +A V+R Y RVWD+S  DPS   DA+ LLTPPF+ G+YL+A +LT +  + LP  S VTAPT D+ V++KL GAW  IKKRAV A +  Q+RAA       + P KR RTS
Sbjct:  166 MKFGMLKMRVLHPSEELKVFDVPPLGEDGLPE--EQKKALPQKMVAHDDLHPVAQKARNKLCRALVTRFYGRVWDTSTLDPSVLCDAACLLTPPFSEGNYLSAMKLTAEGCEYLPTGSCVTAPTPDEEVQKKLDGAWAEIKKRAVAAVKTAQSRAAGXXXXXXKRPLKRARTS 336          
BLAST of mRNA_H-elongata_contig51845.12464.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.090e-42
Identity = 90/174 (51.72%), Postives = 114/174 (65.52%), Query Frame = 1
Query:    1 MKFGKFKMDVLDMRKELKVYGIPALGDNDLPDPGAAKGDLPFKMVKPGDLHPVASRTRAELSKAFVSRLYRRVWDSSPPDPSFFRDASILLTPPFNGGHYLTAFRLTEKDADSLPLSSLVTAPTTDDTVKEKLQGAWDGIKKRAVDAQREKQTRAASVDP-QG--PFKRQRTSG 513
            +KFG  KM VL+   +LKV+ IP LG++ LPD    K  L  KMV   +LHPVA + R +L +A VSR Y  VWD S  DPS F DA+ LLTPPF+ G+YL+A +LT ++ D+L   S V APT+D+ V+EKL+G W  IKKRAV A + +Q R A     QG  PFKR RTSG
Sbjct:  259 IKFGMLKMGVLNSSADLKVFDIPPLGEDGLPDRKEQKKPLRHKMVAHDELHPVAQKARDKLCRALVSRFYGHVWDDSCLDPSMFCDAACLLTPPFSEGNYLSAMKLTAEEDDNLAAVSTVVAPTSDEDVREKLEGIWAEIKKRAVTAVKTEQNRVAGEGGGQGSDPFKRARTSG 432          
BLAST of mRNA_H-elongata_contig51845.12464.1 vs. uniprot
Match: A0A6H5JWE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE7_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 5.100e-41
Identity = 85/172 (49.42%), Postives = 110/172 (63.95%), Query Frame = 1
Query:   10 GKFKMDVLDMRKEL--KVYGIPALGDNDLPDPGAAKGDLPFKMVKPGDLHPVASRTRAELSKAFVSRLYRRVWDSSPPDPSFFRDASILLTPPFNGGHYLTAFRLTEKDADSLPLSSLVTAPTTDDTVKEKLQGAWDGIKKRAVDAQREKQTRAASVDPQG---PFKRQRTS 510
              FK+ + D++ ++  +V+ IP LG++ LPD    K  LP KMV   DLHPVA + R EL +A V+R Y RVWD+S  DPS   DA  LLTPPF+ G+Y++A +LT ++ + LP  S VTAPT D+ VKEKL GAW  IKKRAV A +  Q+RAA         P KR RTS
Sbjct:  130 ANFKVKIDDLQVDVLGEVFDIPPLGEDGLPDRKDQKKALPHKMVAHDDLHPVAHKARNELCRALVTRFYGRVWDTSTLDPSVLCDAPCLLTPPFSEGNYVSAMKLTAEECEYLPAGSCVTAPTLDEEVKEKLDGAWTEIKKRAVAAVKTAQSRAAXXXXXXXXXPLKRARTS 301          
BLAST of mRNA_H-elongata_contig51845.12464.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 7.480e-41
Identity = 85/173 (49.13%), Postives = 109/173 (63.01%), Query Frame = 1
Query:    1 MKFGKFKMDVLDMRKELKVYGIPALGDNDLPDPGAAKGDLPFKMVKPGDLHPVASRTRAELSKAFVSRLYRRVWDSSPPDPSFFRDASILLTPPFNGGHYLTAFRLTEKDADSLPLSSLVTAPTTDDTVKEKLQGAWDGIKKRAVDAQREKQTRAASVDP--QGPFKRQRTSG 513
            MKFG    DVLD  K+LKV+ +P +G++ LPD G  K  LPFKMV P  LH    +TR E+ +A VSR Y RVWD +  DP FF  A+ LLTPPF+ G ++ A +L   D + LP +S  TAPT D+ V  KL   W  IK+RAV+A +++Q  AAS  P   G FKR RT+G
Sbjct:  503 MKFGMLNTDVLDPSKDLKVFQVPPIGEDGLPDRGQQKKPLPFKMVPPEQLHAAVEKTRVEMRRALVSRFYGRVWDENTLDPPFFCHAACLLTPPFSEGLHVAAMKLAAGDDEYLPSTSTATAPTMDEEVTAKLDETWKEIKERAVEAVKKEQA-AASSGPGAAGVFKRARTAG 674          
BLAST of mRNA_H-elongata_contig51845.12464.1 vs. uniprot
Match: A0A6H5KBZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ2_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 2.190e-35
Identity = 70/131 (53.44%), Postives = 88/131 (67.18%), Query Frame = 1
Query:  130 MVKPGDLHPVASRTRAELSKAFVSRLYRRVWDSSPPDPSFFRDASILLTPPFNGGHYLTAFRLTEKDADSLPLSSLVTAPTTDDTVKEKLQGAWDGIKKRAVDAQREKQTRAASVDP---QGPFKRQRTSG 513
            MV   DLHPVA + R EL +A V+R Y RVWD S  DPS F D + LLTPPF+ G+YL+A +LT ++ D LP  S V APT+D+ V+EKL GAW  I+KRAV A ++ Q +AA        GPFKR RT+G
Sbjct:    1 MVAHDDLHPVAQKARQELCRALVTRFYGRVWDESTLDPSIFADVACLLTPPFSEGNYLSAMKLTVEEGDYLPAGSSVIAPTSDEDVREKLDGAWAEIQKRAVTAVKKAQRQAAGDSDGGGAGPFKRARTNG 131          
BLAST of mRNA_H-elongata_contig51845.12464.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 3.920e-34
Identity = 69/131 (52.67%), Postives = 87/131 (66.41%), Query Frame = 1
Query:   19 KMDVLDMRKELKVYGIPALGDNDLPDPGAAKGDLPFKMVKPGDLHPVASRTRAELSKAFVSRLYRRVWDSSPPDPSFFRDASILLTPPFNGGHYLTAFRLTEKDADSLPLSSLVTAPTTDDTVKEKLQGAW 411
            KM VLD  +ELKV+ IP LG++ LPD    K  LP  MV    L PVA + R EL +A  +R Y RVWD+S  DPS   DA+ LLTPPF+ G+YL+A +LT ++ + LP  S VTAPT D+ V+EKL GAW
Sbjct:  221 KMRVLDPSEELKVFDIPPLGEDGLPDRKEQKKALPHHMVAHDYLDPVAQKERNELCRALGTRFYGRVWDTSTLDPSVLCDAACLLTPPFSEGNYLSAMKLTAEEGEYLPAGSCVTAPTLDEEVQEKLDGAW 351          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51845.12464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KEE6_9PHAE5.760e-4753.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ66_9PHAE1.030e-4452.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8W6_9PHAE3.880e-4450.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K0P1_9PHAE4.520e-4452.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGB7_9PHAE2.310e-4351.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB08_9PHAE1.090e-4251.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWE7_9PHAE5.100e-4149.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJJ9_9PHAE7.480e-4149.13Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KBZ2_9PHAE2.190e-3553.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JTT2_9PHAE3.920e-3452.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51845contigH-elongata_contig51845:2223..2735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size514
Cds size513
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.0603874-CDS-H-elongata_contig51845:2222..27351622930848.0603874-CDS-H-elongata_contig51845:2222..2735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51845 2223..2735 +
1691679596.194156-CDS-H-elongata_contig51845:2222..27351691679596.194156-CDS-H-elongata_contig51845:2222..2735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51845 2223..2735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51845.12464.1prot_H-elongata_contig51845.12464.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51845 2223..2735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51845.12464.1

>prot_H-elongata_contig51845.12464.1 ID=prot_H-elongata_contig51845.12464.1|Name=mRNA_H-elongata_contig51845.12464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
MKFGKFKMDVLDMRKELKVYGIPALGDNDLPDPGAAKGDLPFKMVKPGDL
HPVASRTRAELSKAFVSRLYRRVWDSSPPDPSFFRDASILLTPPFNGGHY
LTAFRLTEKDADSLPLSSLVTAPTTDDTVKEKLQGAWDGIKKRAVDAQRE
KQTRAASVDPQGPFKRQRTSG
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mRNA from alignment at H-elongata_contig51845:2223..2735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51845.12464.1 ID=mRNA_H-elongata_contig51845.12464.1|Name=mRNA_H-elongata_contig51845.12464.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at H-elongata_contig51845:2223..2735+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTTTGGCAAGTTCAAAATGGACGTGCTGGACATGCGAAAAGAGCT TAAGGTGTACGGCATCCCCGCCCTTGGAGACAACGACCTTCCCGACCCCG GAGCAGCGAAAGGGGACCTGCCCTTCAAGATGGTGAAACCAGGCGACCTG CATCCTGTGGCCTCTCGGACGCGGGCCGAGCTCTCCAAGGCTTTCGTCTC GAGGTTGTACAGGCGCGTGTGGGACTCGTCCCCGCCGGACCCCTCTTTCT TCCGCGACGCCTCTATCCTGCTCACGCCACCGTTCAACGGTGGCCACTAC CTGACGGCGTTTAGGCTCACAGAGAAGGACGCCGATTCCCTGCCACTATC CTCGCTTGTAACGGCCCCTACGACTGATGACACGGTGAAAGAGAAACTTC AGGGCGCGTGGGATGGTATCAAAAAGCGCGCTGTCGATGCTCAGAGAGAG AAGCAGACGCGGGCGGCGTCGGTCGATCCACAAGGTCCTTTCAAGCGCCA ACGCACGTCTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig51845:2223..2735+

>mRNA_H-elongata_contig51845.12464.1 ID=mRNA_H-elongata_contig51845.12464.1|Name=mRNA_H-elongata_contig51845.12464.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig51845:2223..2735+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTTTGGCAAGTTCAAAATGGACGTGCTGGACATGCGAAAAGAGCT
TAAGGTGTACGGCATCCCCGCCCTTGGAGACAACGACCTTCCCGACCCCG
GAGCAGCGAAAGGGGACCTGCCCTTCAAGATGGTGAAACCAGGCGACCTG
CATCCTGTGGCCTCTCGGACGCGGGCCGAGCTCTCCAAGGCTTTCGTCTC
GAGGTTGTACAGGCGCGTGTGGGACTCGTCCCCGCCGGACCCCTCTTTCT
TCCGCGACGCCTCTATCCTGCTCACGCCACCGTTCAACGGTGGCCACTAC
CTGACGGCGTTTAGGCTCACAGAGAAGGACGCCGATTCCCTGCCACTATC
CTCGCTTGTAACGGCCCCTACGACTGATGACACGGTGAAAGAGAAACTTC
AGGGCGCGTGGGATGGTATCAAAAAGCGCGCTGTCGATGCTCAGAGAGAG
AAGCAGACGCGGGCGGCGTCGGTCGATCCACAAGGTCCTTTCAAGCGCCA
ACGCACGTCTGGGATGAAGTTTGGCAAGTTCAAAATGGACGTGCTGGACA
TGCGAAAAGAGCTTAAGGTGTACGGCATCCCCGCCCTTGGAGACAACGAC
CTTCCCGACCCCGGAGCAGCGAAAGGGGACCTGCCCTTCAAGATGGTGAA
ACCAGGCGACCTGCATCCTGTGGCCTCTCGGACGCGGGCCGAGCTCTCCA
AGGCTTTCGTCTCGAGGTTGTACAGGCGCGTGTGGGACTCGTCCCCGCCG
GACCCCTCTTTCTTCCGCGACGCCTCTATCCTGCTCACGCCACCGTTCAA
CGGTGGCCACTACCTGACGGCGTTTAGGCTCACAGAGAAGGACGCCGATT
CCCTGCCACTATCCTCGCTTGTAACGGCCCCTACGACTGATGACACGGTG
AAAGAGAAACTTCAGGGCGCGTGGGATGGTATCAAAAAGCGCGCTGTCGA
TGCTCAGAGAGAGAAGCAGACGCGGGCGGCGTCGGTCGATCCACAAGGTC
CTTTCAAGCGCCAACGCACGTCTGGG
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