mRNA_H-elongata_contig51817.12459.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51817.12459.1
Unique NamemRNA_H-elongata_contig51817.12459.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: D8LAX4_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX4_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 4.270e-71
Identity = 235/431 (54.52%), Postives = 267/431 (61.95%), Query Frame = 1
Query:    1 RSQFAVEPKRIIFQGRILNKDDQSLVECKLKDGLTVIVQIAQAAEAPTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPLGGQAAST--------------PIGQAVATVKEQPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTE-SDAGESWLLTPTATAWEILTAGRVHIQAGLASLPVSGGAARASAGTTGFGPPAGFATGLGELAPPGVY-----AGGLGGGGMXXXXXXGPNMAAIQRMAQDPAMXXXXXXXXXXXXXXXXXXRMGAAMQAMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALQRAS-MNLGGAFGA---------AQGFPQPTPGVGQAGISPAPVPPTVAAPXXXXXXXXXXXXXXXXAGD--GDDPEEKSEDDLMAEAIRRSLED 1197
            RSQF VEPKRIIFQGRILNKDDQ+L +CKLKDGLTV+VQ+     +P    XXXXXXXXXXXX     + A P   P  G AA+T              P+GQAVATV  QPAGVARECLTTL+KVIDNI  HP  +KYRKIKRANAGF RKVG+VPGGEA MRALGF E  DA ESWLL P+  AW +LTAGRV IQ  LA+LP +  AA AS G        GFA GLG L PPG +      GG GGGGM       P+MA + RMAQ+PA+   XXXXXXXXXXXXXXX     MQ++ +                  XXXXXXXXXX  ALQRA+ M+ GGA  A         AQGF  P                     XXXXXXXXXXXXX    G   G++ +E +ED+L+AEAIRRS+ED
Sbjct:   47 RSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASPXXXXXXXXXXXXXXXXXXXX-SPATPN--PAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASTG--------GFAGGLGVLPPPGAFPQAGFGGGTGGGGM-------PDMATMARMAQNPAVMQGXXXXXXXXXXXXXXXXXXXXMQSVMARPGGLAQAFEAIQNNPAMXXXXXXXXXXPTALQRAAQMDFGGALAAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEGGGEAGEEGKEMTEDELIAEAIRRSMED 459          
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A7S2SMK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMK3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.290e-20
Identity = 72/192 (37.50%), Postives = 104/192 (54.17%), Query Frame = 1
Query:    1 RSQFAVEP--KRIIFQGRILNKDDQSLVECKLKDGLTVIVQIAQ--AAEAPTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPL-----GGQAASTPIGQAVATVKEQPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDAGESWLLTPTATAWEILTAGRVHIQ 549
            +++  V+P  +R+I +G+IL KDDQ L   K+  G TV++Q+ Q  AA   TP+               Q P  A   +PP      G  A +T I  A+  +   P    R  L TL KVIDNI+Q+P  DKYR+++ ANA F RKVGS+PGG   +R +GFT+ +   + +L P+  AW  L + R  +Q
Sbjct:   37 QAKLGVDPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPSGT-------------QAPVAAAAPMPPTAAAMAGTTAPTTGIQAALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTDGEEEGTLILAPSTEAWHHLNSCRRLVQ 214          
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A7S2SNT8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNT8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.940e-19
Identity = 72/192 (37.50%), Postives = 104/192 (54.17%), Query Frame = 1
Query:    1 RSQFAVEP--KRIIFQGRILNKDDQSLVECKLKDGLTVIVQIAQ--AAEAPTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPL-----GGQAASTPIGQAVATVKEQPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDAGESWLLTPTATAWEILTAGRVHIQ 549
            +++  V+P  +R+I +G+IL KDDQ L   K+  G TV++Q+ Q  AA   TP+               Q P  A   +PP      G  A +T I  A+  +   P    R  L TL KVIDNI+Q+P  DKYR+++ ANA F RKVGS+PGG   +R +GFT+ +   + +L P+  AW  L + R  +Q
Sbjct:   37 QAKLGVDPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPSGT-------------QAPVAAAAPMPPTAAAMAGTTAPTTGIQAALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTDGEEEGTLILAPSTEAWHHLNSCRRLVQ 214          
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A7R9YC84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC84_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 9.070e-17
Identity = 82/202 (40.59%), Postives = 110/202 (54.46%), Query Frame = 1
Query:   19 EPKRIIFQGRILNKDDQSLVECKLKDGLTVI-VQIAQAAEAPTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPLGGQAASTPIGQAVATVKEQPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDAGESWLLTPTATAWEILTAGRVHIQAGL-ASLPVSGGAARASAGTTGFG 618
            E +R+I+ G++L      L    +KDG T++ +++     A  P A  XXXXXXXXXX          RL     Q   TP   AV T+    A    E L TL KV++NI  +P   KYR +K+ NA F R++G V G  A +R LGF   D GE+W LTP+A+AWEIL+A R H+Q  + A  P +  AA A+A    FG
Sbjct:  103 ENQRLIYTGKLLKNGADPLAPFGIKDGDTILYMRMNPPRSASAPRAPAXXXXXXXXXXXXXXXXQRTNRLTIPAHQ--RTPFTHAVETLAADDAAKRPEALRTLLKVMENIQNNPLEAKYRTLKKGNAVFNRRLGGVMGAAACLRELGF--QDRGETWELTPSASAWEILSAARTHLQRVIEAESPSTQAAAAANAPGAAFG 300          
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A485L3W8_9STRA (Aste57867_15783 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3W8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.570e-12
Identity = 62/181 (34.25%), Postives = 86/181 (47.51%), Query Frame = 1
Query:   10 FAVEPKRIIFQGRILNKDDQSLVECKLKDGLTVIVQI-AQAAEAPTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPLGGQAASTPIG----QAVATVKEQPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDAGESWLLTPTATAWEILTAGR 537
            F  E +R+IFQGR+L+ D  +L    L  GLTV + +  +   A TP+                      P   P+GG A ST       Q +  ++  P G A   + TL+K+ +NIV HP  +KYRKI+ AN   +RKV  VP G  S+ A+GF         +L P A  WE L A +
Sbjct:   41 FPPESQRLIFQGRVLD-DKNTLASYSLASGLTVHLAVNTKLVPATTPS----------------------PSAVPVGGAAPSTXXXXXXIQLLPLLRASPGGPA--AIATLTKMAENIVNHPTEEKYRKIRLANEALKRKVLDVPHGTPSVLAMGFAAGVEDGHLVLVPNAANWEHLVASK 196          
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A836CLK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.610e-12
Identity = 57/188 (30.32%), Postives = 81/188 (43.09%), Query Frame = 1
Query:    7 QFAVEPKRIIFQGRILNKDDQSLVECKLKDGLTVIVQIAQAAEAPTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPLGGQAASTPIGQAVATVKEQPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDA-GESWLLTPTATAWEILTAGRVHIQAGLASL 567
            Q     KRIIFQGR+L+KD+ +L E K++DG T+                                                                           V DNI+ HP  +KYR IK++N  F  +VG+VPGG A+++ALGFT+S    ++W+L P+A AW  L  GR  +Q+ L+SL
Sbjct:  166 QLGKATKRIIFQGRVLSKDEATLAEMKVQDGQTI--------------------------------------------------------------------------HVADNIINHPLEEKYRSIKKSNKSFAARVGNVPGGAAAIQALGFTDSPTVPDTWVLLPSADAWPTLRQGRDLLQSTLSSL 279          
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A7S2EXK5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXK5_TRICV)

HSP 1 Score: 71.6 bits (174), Expect = 1.110e-9
Identity = 58/155 (37.42%), Postives = 82/155 (52.90%), Query Frame = 1
Query:  247 ASTPIGQAVATVKEQ--PAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFT-----ESDAGES-WLLTPTATAWEILTAGRVHIQAGLASLPVSGGAARASAGTTGFGPPAGFATGLGELAPPGVYAGGLG 687
            AS P+  A+ T++ +  PA   +  L TL K++ N+  HP  +KYR++K+ NA F+R++G +PGG  +M A GFT       DA E  + LTP+A AW  L A +  +   LA    +   A A        PP G A      A PG+ AGGLG
Sbjct:  173 ASDPLPAALGTIRSRCTPAQY-KTALQTLDKLLGNVKSHPMEEKYRRVKKGNAAFQRRLGGLPGGHDAMLAAGFTVEQECSGDACEEIYSLTPSADAWPKLVAAKDAVATALAEAERAQQQAAA--------PPVGAAP-----AFPGMGAGGLG 313          
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A448ZQX1_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQX1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.350e-9
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 1
Query:  226 PPLGGQAASTPIGQAVATVKE-QPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGF-TESDAGES---WLLTPTATAWEILTAGRVHIQAGLA 561
            PP GG  AS P+G A+  ++   P  V    + TL KV+ NIV HP  +KYR++K+ N  FR+++G + GG   M A GF  E D GE+   + L  TA +W  L   +  ++  +A
Sbjct:  139 PPSGG--ASDPLGLALERLRSGNPPSVYATAVGTLGKVLGNIVSHPMEEKYRRVKKQNPAFRKRLGGLAGGHDCMLACGFRVEVDEGENAEVYKLHATADSWNALVEAKTRVEEAVA 253          
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A7S3KXS0_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KXS0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.530e-9
Identity = 63/195 (32.31%), Postives = 97/195 (49.74%), Query Frame = 1
Query:    7 QFAVEPKRI-------IFQGRILNKDDQSLV-ECKLKDGLTVIVQIAQAAE--APTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPLGGQAASTPIGQAVATVKEQPAG-VARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGF---TESDAGESWLLTPTATAWEILTAGRVHIQ 549
            Q A+E  +I       IF+GR++  D +  V E KL+DG  +       AE  AP PAA  XXXX         PP+       P        P+  A+ T++   A  V +  + TL K++  I+ +P  +KYR +K+ N  F R++G +PGG+ASM+A+GF   T+      + +  +A AW  L A +  I+
Sbjct:   39 QLAIEATKIPAATLKLIFRGRMIADDGKKAVTEYKLEDGSVLHCMGKPQAENAAPAPAAAPXXXXASLPSVNLIPPSXXXXXXXPAA-LGVGDPLTMALRTLRASNAPQVYKTAIETLEKLLSKIISNPLEEKYRSVKKDNPAFTRRLGGLPGGDASMKAVGFNVETDESGQAVYRMQASAEAWPKLLAAQTTIR 232          
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A7S3VBJ8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VBJ8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.690e-8
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  316 LTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDAGESWLLTPTATAWEILTAGRVHI 546
            +TTL K++ NIV  PQ +KYRK+KRANA F++++G + G    M  LGF+ +D  E ++L P+  AW  L  G+  +
Sbjct:   46 ITTLQKILGNIVTKPQEEKYRKVKRANAAFQKRLGRLNGAHDVMTMLGFSVNDQNE-YVLVPSPEAWPKLVEGKKEV 121          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LAX4_ECTSI4.270e-7154.52Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A7S2SMK3_9STRA3.290e-2037.50Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SNT8_9STRA3.940e-1937.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9YC84_9STRA9.070e-1740.59Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A485L3W8_9STRA1.570e-1234.25Aste57867_15783 protein n=1 Tax=Aphanomyces stella... [more]
A0A836CLK8_9STRA1.610e-1230.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2EXK5_TRICV1.110e-937.42Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A448ZQX1_9STRA3.350e-937.61Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
A0A7S3KXS0_9STRA4.530e-932.31Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A7S3VBJ8_9STRA3.690e-842.86Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51817contigH-elongata_contig51817:478..2380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.7
Seed ortholog evalue3.5e-47
Seed eggNOG ortholog2880.D8LAX4
KEGG koko:K04523
KEGG Pathwayko04141,map04141
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016043,GO:0019538,GO:0019941,GO:0022402,GO:0022607,GO:0030163,GO:0030433,GO:0030474,GO:0030674,GO:0031023,GO:0032446,GO:0033554,GO:0034976,GO:0036211,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051300,GO:0051603,GO:0051716,GO:0060090,GO:0070647,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0010@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPUG domain
Ec32 orthologEc-27_006090.1
Exons3
Model size1406
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51817.12459.1prot_H-elongata_contig51817.12459.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51817 685..2177 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930847.530254-UTR-H-elongata_contig51817:477..6841622930847.530254-UTR-H-elongata_contig51817:477..684Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51817 478..684 +
1691679595.9828925-UTR-H-elongata_contig51817:477..6841691679595.9828925-UTR-H-elongata_contig51817:477..684Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51817 478..684 +
1622930847.5973873-UTR-H-elongata_contig51817:2177..23801622930847.5973873-UTR-H-elongata_contig51817:2177..2380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51817 2178..2380 +
1691679596.0262985-UTR-H-elongata_contig51817:2177..23801691679596.0262985-UTR-H-elongata_contig51817:2177..2380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51817 2178..2380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930847.5484498-CDS-H-elongata_contig51817:684..8911622930847.5484498-CDS-H-elongata_contig51817:684..891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51817 685..891 +
1691679595.996605-CDS-H-elongata_contig51817:684..8911691679595.996605-CDS-H-elongata_contig51817:684..891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51817 685..891 +
1622930847.5648906-CDS-H-elongata_contig51817:1135..15611622930847.5648906-CDS-H-elongata_contig51817:1135..1561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51817 1136..1561 +
1691679596.0060987-CDS-H-elongata_contig51817:1135..15611691679596.0060987-CDS-H-elongata_contig51817:1135..1561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51817 1136..1561 +
1622930847.5806181-CDS-H-elongata_contig51817:1814..21771622930847.5806181-CDS-H-elongata_contig51817:1814..2177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51817 1815..2177 +
1691679596.0165281-CDS-H-elongata_contig51817:1814..21771691679596.0165281-CDS-H-elongata_contig51817:1814..2177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51817 1815..2177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51817.12459.1

>prot_H-elongata_contig51817.12459.1 ID=prot_H-elongata_contig51817.12459.1|Name=mRNA_H-elongata_contig51817.12459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=332bp
MAIPRLPPLGGQAASTPIGQAVATVKEQPAGVARECLTTLSKVIDNIVQH
PQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDAGESWLLTPTA
TAWEILTAGRVHIQAGLASLPVSGGAARASAGTTGFGPPAGFATGLGELA
PPGVYAGGLGGGGMGMGAGGGPNMAAIQRMAQDPAMMQSMMNDPTVRAMM
GNNPRMGAAMQAMASNPALMSQAFNMMQSNPAMMQQAQRMLQDPAALQRA
SMNLGGAFGAAQGFPQPTPGVGQAGISPAPVPPTVAAPPPAPPAPVTAPT
TPAPAGDGDDPEEKSEDDLMAEAIRRSLEDS*
back to top

mRNA from alignment at H-elongata_contig51817:478..2380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51817.12459.1 ID=mRNA_H-elongata_contig51817.12459.1|Name=mRNA_H-elongata_contig51817.12459.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1903bp|location=Sequence derived from alignment at H-elongata_contig51817:478..2380+ (Himanthalia elongata Himel1 dioecious)
AGGTCCCAATTTGCTGTGGAGCCCAAGCGTATAATATTTCAGGGGCGCAT CCTGAACAAAGACGACCAGTCTCTGGTTGAGTGCAAGCTGAAGGATGGCC TAACCGTCATCGTTCAAATCGCACAAGCGGCAGAAGCTCCCACACCGGCG GCCGCAACGCCTTCACCGGCAGCAGTTTTCCCGAATCCTCCCGGCCAGCC GCCAGCCATGGCAATCCCGAGACTGCCTCCACTGGGTGGCCAAGCGGCCT CGACTCCAATTGGACAGGCGGTGGCAACAGTAAAGGAGCAGCCAGCCGGC GTTGCGAGAGAGTGTCTGACAACGCTGTCAAAGGTAATCGATAACATTGT CCAGCACCCACAGGTCGACAAGTACAGGAAAATCAAGCGAGCCAACGCCG GGTTCCGTCGGAAGGTGAAATTATTTATGTGGGGATGTCGAATAATAAGC AGCGCAGTGGAACGTCTCGCGTAGTGCTTCGTGGTGGCTTTTGGGTTTAG GAGGCGCGGTAGAGAGCGTATGCGCGATCGGTAAAGTGTTGAATGCATTT TGTACTCATGTGAGGCACCCTTTGATCTCCTTATTTCATTGTTCCTCTGT GAATACATTGATAGCTACAGTTTTCTAACAAACCGCGTCGTCATCCGGAT ACTGGCAGGTGGGAAGTGTGCCAGGCGGAGAAGCGTCCATGCGAGCCCTC GGCTTCACAGAGAGTGACGCCGGCGAAAGTTGGCTCTTAACCCCGACTGC AACCGCGTGGGAAATTCTCACAGCGGGCCGCGTCCACATTCAGGCAGGTT TGGCGTCTCTTCCCGTGTCAGGGGGCGCCGCACGTGCTAGTGCGGGAACA ACTGGCTTCGGCCCGCCTGCTGGCTTCGCGACAGGTCTCGGGGAACTGGC ACCGCCCGGGGTGTACGCCGGGGGCTTGGGAGGAGGCGGGATGGGTATGG GAGCAGGGGGCGGACCAAACATGGCGGCGATTCAGCGTATGGCTCAAGAC CCCGCGATGATGCAAAGTATGATGAACGATCCTACGGTGCGGGCCATGAT GGGTAACAATCCACGGATGGGAGCGGCTATGCAGGTGTGTTTTCTTTGTC CGCTGGCCTTCAGTACCCTTTGATGTTCATGCCCTTTTGCAAGTTCGTGC CGCTCAAGACGTTGCTCTCTCAGTTTTAATATGTGCTCCAAGCACACCTG ACGAACAAAAAACATTTCCAGCTCTCGTACCAATGATGCTTGTCTGTCAT GTATACTATTTTAGTATTAATTTTACCAATAACCGTGATCGCATCCCTCG CTTTCGCTACTCCCCCGCAATTTCTCCACCCTCCCAGGCTATGGCATCCA ACCCTGCCCTGATGAGCCAGGCGTTCAACATGATGCAGAGCAACCCCGCC ATGATGCAGCAGGCACAACGAATGTTACAGGACCCAGCCGCTCTACAACG AGCCTCCATGAATTTGGGAGGGGCATTTGGAGCAGCCCAAGGTTTTCCAC AGCCCACTCCAGGTGTTGGCCAAGCGGGAATCTCCCCGGCCCCTGTCCCG CCTACTGTAGCAGCACCACCCCCCGCCCCCCCGGCTCCTGTAACTGCGCC CACGACCCCCGCACCAGCTGGTGACGGGGATGACCCAGAGGAGAAATCTG AAGACGACCTGATGGCAGAAGCAATTCGGCGATCATTAGAAGACAGTTGA TCTTCTAGAGAAGTTTTTCTGTAGGTGAAGTTGGCTAACGGGGTGATCAT TCGACGGTGGGCACGCACGACTGTCTGCTGTGATTGTTTTGAGTTTTCGC TGTATACCTGAAGTCATCGGGTGATATATATTTTCTCGAGCGTGTCGTGA CGCTAAAATTTCCCTCGATTCTGAACTAACTCTGTATGCCGCGTATCTCG CCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51817:478..2380+

>mRNA_H-elongata_contig51817.12459.1 ID=mRNA_H-elongata_contig51817.12459.1|Name=mRNA_H-elongata_contig51817.12459.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1992bp|location=Sequence derived from alignment at H-elongata_contig51817:478..2380+ (Himanthalia elongata Himel1 dioecious)
ATGGCAATCCCGAGACTGCCTCCACTGGGTGGCCAAGCGGCCTCGACTCC
AATTGGACAGGCGGTGGCAACAGTAAAGGAGCAGCCAGCCGGCGTTGCGA
GAGAGTGTCTGACAACGCTGTCAAAGGTAATCGATAACATTGTCCAGCAC
CCACAGGTCGACAAGTACAGGAAAATCAAGCGAGCCAACGCCGGGTTCCG
TCGGAAGATGGCAATCCCGAGACTGCCTCCACTGGGTGGCCAAGCGGCCT
CGACTCCAATTGGACAGGCGGTGGCAACAGTAAAGGAGCAGCCAGCCGGC
GTTGCGAGAGAGTGTCTGACAACGCTGTCAAAGGTAATCGATAACATTGT
CCAGCACCCACAGGTCGACAAGTACAGGAAAATCAAGCGAGCCAACGCCG
GGTTCCGTCGGAAGGTGGGAAGTGTGCCAGGCGGAGAAGCGTCCATGCGA
GCCCTCGGCTTCACAGAGAGTGACGCCGGCGAAAGTTGGCTCTTAACCCC
GACTGCAACCGCGTGGGAAATTCTCACAGCGGGCCGCGTCCACATTCAGG
CAGGTTTGGCGTCTCTTCCCGTGTCAGGGGGCGCCGCACGTGCTAGTGCG
GGAACAACTGGCTTCGGCCCGCCTGCTGGCTTCGCGACAGGTCTCGGGGA
ACTGGCACCGCCCGGGGTGTACGCCGGGGGCTTGGGAGGAGGCGGGATGG
GTATGGGAGCAGGGGGCGGACCAAACATGGCGGCGATTCAGCGTATGGCT
CAAGACCCCGCGATGATGCAAAGTATGATGAACGATCCTACGGTGCGGGC
CATGATGGGTAACAATCCACGGATGGGAGCGGCTATGCAGGTGGGAAGTG
TGCCAGGCGGAGAAGCGTCCATGCGAGCCCTCGGCTTCACAGAGAGTGAC
GCCGGCGAAAGTTGGCTCTTAACCCCGACTGCAACCGCGTGGGAAATTCT
CACAGCGGGCCGCGTCCACATTCAGGCAGGTTTGGCGTCTCTTCCCGTGT
CAGGGGGCGCCGCACGTGCTAGTGCGGGAACAACTGGCTTCGGCCCGCCT
GCTGGCTTCGCGACAGGTCTCGGGGAACTGGCACCGCCCGGGGTGTACGC
CGGGGGCTTGGGAGGAGGCGGGATGGGTATGGGAGCAGGGGGCGGACCAA
ACATGGCGGCGATTCAGCGTATGGCTCAAGACCCCGCGATGATGCAAAGT
ATGATGAACGATCCTACGGTGCGGGCCATGATGGGTAACAATCCACGGAT
GGGAGCGGCTATGCAGGCTATGGCATCCAACCCTGCCCTGATGAGCCAGG
CGTTCAACATGATGCAGAGCAACCCCGCCATGATGCAGCAGGCACAACGA
ATGTTACAGGACCCAGCCGCTCTACAACGAGCCTCCATGAATTTGGGAGG
GGCATTTGGAGCAGCCCAAGGTTTTCCACAGCCCACTCCAGGTGTTGGCC
AAGCGGGAATCTCCCCGGCCCCTGTCCCGCCTACTGTAGCAGCACCACCC
CCCGCCCCCCCGGCTCCTGTAACTGCGCCCACGACCCCCGCACCAGCTGG
TGACGGGGATGACCCAGAGGAGAAATCTGAAGACGACCTGATGGCAGAAG
CAATTCGGCGATCATTAGAAGACAGTTGAGCTATGGCATCCAACCCTGCC
CTGATGAGCCAGGCGTTCAACATGATGCAGAGCAACCCCGCCATGATGCA
GCAGGCACAACGAATGTTACAGGACCCAGCCGCTCTACAACGAGCCTCCA
TGAATTTGGGAGGGGCATTTGGAGCAGCCCAAGGTTTTCCACAGCCCACT
CCAGGTGTTGGCCAAGCGGGAATCTCCCCGGCCCCTGTCCCGCCTACTGT
AGCAGCACCACCCCCCGCCCCCCCGGCTCCTGTAACTGCGCCCACGACCC
CCGCACCAGCTGGTGACGGGGATGACCCAGAGGAGAAATCTGAAGACGAC
CTGATGGCAGAAGCAATTCGGCGATCATTAGAAGACAGTTGA
back to top