mRNA_H-elongata_contig51817.12459.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: D8LAX4_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX4_ECTSI) HSP 1 Score: 241 bits (616), Expect = 4.270e-71 Identity = 235/431 (54.52%), Postives = 267/431 (61.95%), Query Frame = 1
Query: 1 RSQFAVEPKRIIFQGRILNKDDQSLVECKLKDGLTVIVQIAQAAEAPTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPLGGQAAST--------------PIGQAVATVKEQPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTE-SDAGESWLLTPTATAWEILTAGRVHIQAGLASLPVSGGAARASAGTTGFGPPAGFATGLGELAPPGVY-----AGGLGGGGMXXXXXXGPNMAAIQRMAQDPAMXXXXXXXXXXXXXXXXXXRMGAAMQAMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALQRAS-MNLGGAFGA---------AQGFPQPTPGVGQAGISPAPVPPTVAAPXXXXXXXXXXXXXXXXAGD--GDDPEEKSEDDLMAEAIRRSLED 1197
RSQF VEPKRIIFQGRILNKDDQ+L +CKLKDGLTV+VQ+ +P XXXXXXXXXXXX + A P P G AA+T P+GQAVATV QPAGVARECLTTL+KVIDNI HP +KYRKIKRANAGF RKVG+VPGGEA MRALGF E DA ESWLL P+ AW +LTAGRV IQ LA+LP + AA AS G GFA GLG L PPG + GG GGGGM P+MA + RMAQ+PA+ XXXXXXXXXXXXXXX MQ++ + XXXXXXXXXX ALQRA+ M+ GGA A AQGF P XXXXXXXXXXXXX G G++ +E +ED+L+AEAIRRS+ED
Sbjct: 47 RSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASPXXXXXXXXXXXXXXXXXXXX-SPATPN--PAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASTG--------GFAGGLGVLPPPGAFPQAGFGGGTGGGGM-------PDMATMARMAQNPAVMQGXXXXXXXXXXXXXXXXXXXXMQSVMARPGGLAQAFEAIQNNPAMXXXXXXXXXXPTALQRAAQMDFGGALAAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEGGGEAGEEGKEMTEDELIAEAIRRSMED 459
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A7S2SMK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMK3_9STRA) HSP 1 Score: 100 bits (248), Expect = 3.290e-20 Identity = 72/192 (37.50%), Postives = 104/192 (54.17%), Query Frame = 1
Query: 1 RSQFAVEP--KRIIFQGRILNKDDQSLVECKLKDGLTVIVQIAQ--AAEAPTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPL-----GGQAASTPIGQAVATVKEQPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDAGESWLLTPTATAWEILTAGRVHIQ 549
+++ V+P +R+I +G+IL KDDQ L K+ G TV++Q+ Q AA TP+ Q P A +PP G A +T I A+ + P R L TL KVIDNI+Q+P DKYR+++ ANA F RKVGS+PGG +R +GFT+ + + +L P+ AW L + R +Q
Sbjct: 37 QAKLGVDPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPSGT-------------QAPVAAAAPMPPTAAAMAGTTAPTTGIQAALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTDGEEEGTLILAPSTEAWHHLNSCRRLVQ 214
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A7S2SNT8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNT8_9STRA) HSP 1 Score: 100 bits (248), Expect = 3.940e-19 Identity = 72/192 (37.50%), Postives = 104/192 (54.17%), Query Frame = 1
Query: 1 RSQFAVEP--KRIIFQGRILNKDDQSLVECKLKDGLTVIVQIAQ--AAEAPTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPL-----GGQAASTPIGQAVATVKEQPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDAGESWLLTPTATAWEILTAGRVHIQ 549
+++ V+P +R+I +G+IL KDDQ L K+ G TV++Q+ Q AA TP+ Q P A +PP G A +T I A+ + P R L TL KVIDNI+Q+P DKYR+++ ANA F RKVGS+PGG +R +GFT+ + + +L P+ AW L + R +Q
Sbjct: 37 QAKLGVDPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPSGT-------------QAPVAAAAPMPPTAAAMAGTTAPTTGIQAALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTDGEEEGTLILAPSTEAWHHLNSCRRLVQ 214
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A7R9YC84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC84_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 9.070e-17 Identity = 82/202 (40.59%), Postives = 110/202 (54.46%), Query Frame = 1
Query: 19 EPKRIIFQGRILNKDDQSLVECKLKDGLTVI-VQIAQAAEAPTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPLGGQAASTPIGQAVATVKEQPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDAGESWLLTPTATAWEILTAGRVHIQAGL-ASLPVSGGAARASAGTTGFG 618
E +R+I+ G++L L +KDG T++ +++ A P A XXXXXXXXXX RL Q TP AV T+ A E L TL KV++NI +P KYR +K+ NA F R++G V G A +R LGF D GE+W LTP+A+AWEIL+A R H+Q + A P + AA A+A FG
Sbjct: 103 ENQRLIYTGKLLKNGADPLAPFGIKDGDTILYMRMNPPRSASAPRAPAXXXXXXXXXXXXXXXXQRTNRLTIPAHQ--RTPFTHAVETLAADDAAKRPEALRTLLKVMENIQNNPLEAKYRTLKKGNAVFNRRLGGVMGAAACLRELGF--QDRGETWELTPSASAWEILSAARTHLQRVIEAESPSTQAAAAANAPGAAFG 300
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A485L3W8_9STRA (Aste57867_15783 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3W8_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.570e-12 Identity = 62/181 (34.25%), Postives = 86/181 (47.51%), Query Frame = 1
Query: 10 FAVEPKRIIFQGRILNKDDQSLVECKLKDGLTVIVQI-AQAAEAPTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPLGGQAASTPIG----QAVATVKEQPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDAGESWLLTPTATAWEILTAGR 537
F E +R+IFQGR+L+ D +L L GLTV + + + A TP+ P P+GG A ST Q + ++ P G A + TL+K+ +NIV HP +KYRKI+ AN +RKV VP G S+ A+GF +L P A WE L A +
Sbjct: 41 FPPESQRLIFQGRVLD-DKNTLASYSLASGLTVHLAVNTKLVPATTPS----------------------PSAVPVGGAAPSTXXXXXXIQLLPLLRASPGGPA--AIATLTKMAENIVNHPTEEKYRKIRLANEALKRKVLDVPHGTPSVLAMGFAAGVEDGHLVLVPNAANWEHLVASK 196
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A836CLK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK8_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.610e-12 Identity = 57/188 (30.32%), Postives = 81/188 (43.09%), Query Frame = 1
Query: 7 QFAVEPKRIIFQGRILNKDDQSLVECKLKDGLTVIVQIAQAAEAPTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPLGGQAASTPIGQAVATVKEQPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDA-GESWLLTPTATAWEILTAGRVHIQAGLASL 567
Q KRIIFQGR+L+KD+ +L E K++DG T+ V DNI+ HP +KYR IK++N F +VG+VPGG A+++ALGFT+S ++W+L P+A AW L GR +Q+ L+SL
Sbjct: 166 QLGKATKRIIFQGRVLSKDEATLAEMKVQDGQTI--------------------------------------------------------------------------HVADNIINHPLEEKYRSIKKSNKSFAARVGNVPGGAAAIQALGFTDSPTVPDTWVLLPSADAWPTLRQGRDLLQSTLSSL 279
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A7S2EXK5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXK5_TRICV) HSP 1 Score: 71.6 bits (174), Expect = 1.110e-9 Identity = 58/155 (37.42%), Postives = 82/155 (52.90%), Query Frame = 1
Query: 247 ASTPIGQAVATVKEQ--PAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFT-----ESDAGES-WLLTPTATAWEILTAGRVHIQAGLASLPVSGGAARASAGTTGFGPPAGFATGLGELAPPGVYAGGLG 687
AS P+ A+ T++ + PA + L TL K++ N+ HP +KYR++K+ NA F+R++G +PGG +M A GFT DA E + LTP+A AW L A + + LA + A A PP G A A PG+ AGGLG
Sbjct: 173 ASDPLPAALGTIRSRCTPAQY-KTALQTLDKLLGNVKSHPMEEKYRRVKKGNAAFQRRLGGLPGGHDAMLAAGFTVEQECSGDACEEIYSLTPSADAWPKLVAAKDAVATALAEAERAQQQAAA--------PPVGAAP-----AFPGMGAGGLG 313
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A448ZQX1_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQX1_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 3.350e-9 Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 1
Query: 226 PPLGGQAASTPIGQAVATVKE-QPAGVARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGF-TESDAGES---WLLTPTATAWEILTAGRVHIQAGLA 561
PP GG AS P+G A+ ++ P V + TL KV+ NIV HP +KYR++K+ N FR+++G + GG M A GF E D GE+ + L TA +W L + ++ +A
Sbjct: 139 PPSGG--ASDPLGLALERLRSGNPPSVYATAVGTLGKVLGNIVSHPMEEKYRRVKKQNPAFRKRLGGLAGGHDCMLACGFRVEVDEGENAEVYKLHATADSWNALVEAKTRVEEAVA 253
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A7S3KXS0_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KXS0_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 4.530e-9 Identity = 63/195 (32.31%), Postives = 97/195 (49.74%), Query Frame = 1
Query: 7 QFAVEPKRI-------IFQGRILNKDDQSLV-ECKLKDGLTVIVQIAQAAE--APTPAAXXXXXXXXXXXXPGQPPAMAIPRLPPLGGQAASTPIGQAVATVKEQPAG-VARECLTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGF---TESDAGESWLLTPTATAWEILTAGRVHIQ 549
Q A+E +I IF+GR++ D + V E KL+DG + AE AP PAA XXXX PP+ P P+ A+ T++ A V + + TL K++ I+ +P +KYR +K+ N F R++G +PGG+ASM+A+GF T+ + + +A AW L A + I+
Sbjct: 39 QLAIEATKIPAATLKLIFRGRMIADDGKKAVTEYKLEDGSVLHCMGKPQAENAAPAPAAAPXXXXASLPSVNLIPPSXXXXXXXPAA-LGVGDPLTMALRTLRASNAPQVYKTAIETLEKLLSKIISNPLEEKYRSVKKDNPAFTRRLGGLPGGDASMKAVGFNVETDESGQAVYRMQASAEAWPKLLAAQTTIR 232
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Match: A0A7S3VBJ8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VBJ8_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 3.690e-8 Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 316 LTTLSKVIDNIVQHPQVDKYRKIKRANAGFRRKVGSVPGGEASMRALGFTESDAGESWLLTPTATAWEILTAGRVHI 546
+TTL K++ NIV PQ +KYRK+KRANA F++++G + G M LGF+ +D E ++L P+ AW L G+ +
Sbjct: 46 ITTLQKILGNIVTKPQEEKYRKVKRANAAFQKRLGRLNGAHDVMTMLGFSVNDQNE-YVLVPSPEAWPKLVEGKKEV 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51817.12459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51817.12459.1 >prot_H-elongata_contig51817.12459.1 ID=prot_H-elongata_contig51817.12459.1|Name=mRNA_H-elongata_contig51817.12459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=332bp MAIPRLPPLGGQAASTPIGQAVATVKEQPAGVARECLTTLSKVIDNIVQHback to top mRNA from alignment at H-elongata_contig51817:478..2380+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51817.12459.1 ID=mRNA_H-elongata_contig51817.12459.1|Name=mRNA_H-elongata_contig51817.12459.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1903bp|location=Sequence derived from alignment at H-elongata_contig51817:478..2380+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51817:478..2380+ >mRNA_H-elongata_contig51817.12459.1 ID=mRNA_H-elongata_contig51817.12459.1|Name=mRNA_H-elongata_contig51817.12459.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1992bp|location=Sequence derived from alignment at H-elongata_contig51817:478..2380+ (Himanthalia elongata Himel1 dioecious)back to top |