mRNA_H-elongata_contig51799.12457.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51799.12457.1
Unique NamemRNA_H-elongata_contig51799.12457.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51799.12457.1 vs. uniprot
Match: D8LE61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE61_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 4.560e-51
Identity = 111/233 (47.64%), Postives = 142/233 (60.94%), Query Frame = 1 
Query:  115 VSDLLKKSGLAESFIDTMVIFINQRFETLLQAFDAKGAACALALRLRRHVQAHDATMAALGIRTGRRRSAGRTND--------ESTCFRPSRESDQNCGLEEHDLHPVVLWRQWKRCGGYWPPQLPDPDDIEFGGPDGTLKFMSQLDDGTQVFLREISQHFLETSLPEDGEDFGAACRAAPRKVRYRGRAQRHEKKEAEYLRYIEEATNRLAQLKSIVLEPVLCEVLMHQVVG 789
            +S LL+KSG+ +SF+D+MV+F+++R   L+     K AA A A RLR+HVQAHDAT  ALGIR GR R +             ES    P+   D     EEHD+  V LWRQW   GG+WPPQ+PDP+D  F G DGT +F+S+LD+GT +FL+EIS+  LET+LPED E+  AA          RG         A+  R   E  NRLAQLKS VLEP+LC++L  QVV 
Sbjct:    1 MSGLLRKSGMVDSFVDSMVVFVDRRIGALVSVMSPKDAAYAFARRLRQHVQAHDATTLALGIRAGRTRKSSENIKSQWDENVAESVGEGPAATGDGE-ETEEHDVQAVHLWRQWTCSGGFWPPQMPDPNDPVFDGLDGTEEFLSKLDEGTHLFLKEISRDILETALPEDAEELRAASGGT------RGAG-------ADSSRSFMETANRLAQLKSGVLEPMLCQMLTQQVVS 219
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BLAST of mRNA_H-elongata_contig51799.12457.1 vs. uniprot
Match: A0A6H5KAD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD1_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.230e-46
Identity = 104/221 (47.06%), Postives = 133/221 (60.18%), Query Frame = 1 
Query:  151 SFIDTMVIFINQRFETLLQAFDAKGAACALALRLRRHVQAHDATMAALGIRTGRRRSAG--------RTNDESTCFRPSRESDQNCGLEEHDLHPVVLWRQWKRCGGYWPPQLPDPDDIEFGGPDGTLKFMSQLDDGTQVFLREISQHFLETSLPEDGEDFGAACRAAPRKVRYRGRAQRHEKKEAEYLRYIEEATNRLAQLKSIVLEPVLCEVLMHQVVG 789
            SF+D++V+FI++R + L+     K AA A A RLR+HVQAHDAT  ALGIR GR R +         +   ES   RP+   D     EEHD+  V LWRQW   GG+WPPQ+PDP+D  F G DGT +F+S+LD+G  +FL+EIS+  LET+LPED E+  AA          RG         A+  R   E  NRLAQLKS VLEP+LC++L   VV 
Sbjct:   20 SFVDSVVVFIDRRIDALVSVMSPKDAAYAFARRLRQHVQAHDATTLALGIRAGRTRKSSENIKGQRDQNVTESVGERPAATGDGE-ETEEHDVQAVQLWRQWTCSGGFWPPQMPDPNDPVFDGLDGTEEFLSKLDEGIHLFLKEISRDILETALPEDAEELRAASGGT------RGAG-------ADSSRSFMETANRLAQLKSGVLEPMLCQMLTQHVVS 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51799.12457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE61_ECTSI4.560e-5147.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAD1_9PHAE2.230e-4647.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51799contigH-elongata_contig51799:485..2647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001070.1
Exons4
Model size792
Cds size792
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51799.12457.1prot_H-elongata_contig51799.12457.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51799 485..2647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930847.290197-CDS-H-elongata_contig51799:484..7581622930847.290197-CDS-H-elongata_contig51799:484..758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51799 485..758 -
1691679595.867222-CDS-H-elongata_contig51799:484..7581691679595.867222-CDS-H-elongata_contig51799:484..758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51799 485..758 -
1622930847.3091495-CDS-H-elongata_contig51799:1203..13131622930847.3091495-CDS-H-elongata_contig51799:1203..1313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51799 1204..1313 -
1691679595.875005-CDS-H-elongata_contig51799:1203..13131691679595.875005-CDS-H-elongata_contig51799:1203..1313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51799 1204..1313 -
1622930847.3250713-CDS-H-elongata_contig51799:1613..18711622930847.3250713-CDS-H-elongata_contig51799:1613..1871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51799 1614..1871 -
1691679595.8831637-CDS-H-elongata_contig51799:1613..18711691679595.8831637-CDS-H-elongata_contig51799:1613..1871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51799 1614..1871 -
1622930847.341759-CDS-H-elongata_contig51799:2497..26471622930847.341759-CDS-H-elongata_contig51799:2497..2647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51799 2498..2647 -
1691679595.8957517-CDS-H-elongata_contig51799:2497..26471691679595.8957517-CDS-H-elongata_contig51799:2497..2647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51799 2498..2647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51799.12457.1

>prot_H-elongata_contig51799.12457.1 ID=prot_H-elongata_contig51799.12457.1|Name=mRNA_H-elongata_contig51799.12457.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
LLGSWDDDDKCFLQALKGFVESAVNLLDANSEGVGSRVVSDLLKKSGLAE
SFIDTMVIFINQRFETLLQAFDAKGAACALALRLRRHVQAHDATMAALGI
RTGRRRSAGRTNDESTCFRPSRESDQNCGLEEHDLHPVVLWRQWKRCGGY
WPPQLPDPDDIEFGGPDGTLKFMSQLDDGTQVFLREISQHFLETSLPEDG
EDFGAACRAAPRKVRYRGRAQRHEKKEAEYLRYIEEATNRLAQLKSIVLE
PVLCEVLMHQVVG*
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mRNA from alignment at H-elongata_contig51799:485..2647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51799.12457.1 ID=mRNA_H-elongata_contig51799.12457.1|Name=mRNA_H-elongata_contig51799.12457.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2163bp|location=Sequence derived from alignment at H-elongata_contig51799:485..2647- (Himanthalia elongata Himel1 dioecious)
TTGCTCGGGTCATGGGATGACGATGACAAATGTTTCCTGCAGGCCTTGAA
GGGTTTTGTAGAGAGCGCTGTGAACCTGCTTGATGCGAACAGCGAAGGTG
TCGGCTCGCGCGTCGTGAGCGACTTGTTGAAGAAGAGCGGGCTGGCCGAG
GTAAGCTTGACGCGACTGACGCGGTCTTGAATACCATTAGTAGTAGTAAC
GAACGGTTGCTCCTGCTTTTCCCCTGTGTATTATTGATTGATTGATGATT
GATTGATTGTGTAGGCCAGATTTGCAGAGCGGCTAGAGAGTGCCTCGTAG
TGCGTGTTCCAAAGCGCAACAAAGCTTAACAACTGTATCAAATTAAACTT
GAAAGGATTCGCCGATACATTAGGATAATCATTTTATTGAATCTGGTCGT
AAACGTCTAGGTACTAGGTTTCGACAAGATAAAAACAACACTTCCAGGGT
AACTCATTAATCATATATGAGTTGTATAAAATATTGATTATAGCCCCTAA
AATTGGCTATTTGATTTATTTTTTAAACTAAAATATTTATTTTCGAGGTT
CGGTACATTGATATGGTAACCCTGCCTAATCATTATTATTGTAGGCCAGG
GTCGGTGAGCGGTAGACAACTCTCAATTCCATAGAGCTCCTGGGCTCGAC
TCGGTATCGCAAACGACAAAAATCGTGGAGCCACTCCACTAATCTTATCC
CACCGCATCGTCCTCTCATCTCCCCTTCCCTCCCCTCTCCAATCCTTCCA
AAAAATTGTTGTTCCTGACGGAACAGTCTTTTATCGATACCATGGTAATT
TTCATCAACCAGCGCTTCGAGACCCTTTTGCAAGCTTTCGATGCCAAGGG
CGCCGCGTGTGCGCTCGCGCTTAGGCTGAGGCGGCACGTTCAGGCGCATG
ATGCTACCATGGCGGCCCTGGGGATTCGGACGGGCAGGCGTCGGAGCGCG
GGCCGCACAAACGATGAGAGCACTTGTTTTCGGCCTTCTCGTGAAAGCGA
CCAAAATTGTGGCCTGGAGGAGCACGACCTGCATGTGTGGCGTGTTACTA
TTTCATAAATAGTTGAATTACTTGCATTATGTATTATTGATAAAACTGGA
GAGCTGTTTTCTCTTTTGTCTAAGCTTTATTGCCCTTGCTTGCCCCAAGC
AGGGTTTCCGCCGAGGCGTTCTCGTCAGAATAAACTCAAACCACTGGTGG
GTCGTACCTACTGTACCTGTTTTTGCTAGTGCCTTGTTAAGCGGCTTCCT
GTGCTCAACTTCCTGACTCTTCGTTTCGCTTGTGCGTCCGTCCGCGGCGT
TCCTTTCGGGGGTGGGGGACACTCTGGGTTAAAGCCTGTCGTGCTTTGGC
GTCAATGGAAGCGATGTGGTGGCTACTGGCCGCCGCAACTGCCCGACCCT
GATGACATCGAGTTCGGAGGACCTGACGGCACTTTGAAATTCATGTGAGT
TCGTTGTGGTTTGAATTAAAACTTTGGTCGAAGCTTTTGAGGTACAGTTA
GAGGTTGTGTATGGCAGCGGGGTTGGTCGCCCCGGTGATTCAGTTGGCAA
CCTCGAAACCCCTCTGATGTTGGGACATGCGTTCGAATCTCGGCGGAGTC
ACACGAACTGGAATTTTCATTTCATATCGTGCCCATCAAGTGGAGAACGA
TTATTTCGTGGGTATACAAAATTCGACTTGACGACCGACGAGGGAATAAA
ACTGCTAAATCCTTTTCACGATAAAAAAATGAAGGCAAGCGCCGCAGGAG
GAAAGATGTGTAGAAATCATGTGTGACCTTCCTCCCGTGTGACCTTCCTC
CGGCTAGTGCCTCCACAAGTCTGACATCCAGAATAAAACGGGACGACAAT
ACATCATATTATGTCCTTCGCTCAACCCTCTCTGTCCAGGTCGCAGCTTG
ACGACGGCACCCAAGTGTTCCTCAGAGAAATTTCTCAGCATTTTCTCGAG
ACTAGTCTGCCTGAAGATGGAGAGGATTTTGGAGCGGCGTGCAGAGCAGC
ACCTAGAAAAGTACGTTATCGAGGTCGCGCTCAACGGCATGAAAAAAAAG
AGGCCGAATACTTAAGGTACATCGAGGAGGCCACGAACCGGCTAGCCCAG
CTGAAAAGCATTGTCCTGGAACCCGTGCTCTGCGAGGTCTTGATGCACCA
GGTGGTTGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig51799:485..2647-

>mRNA_H-elongata_contig51799.12457.1 ID=mRNA_H-elongata_contig51799.12457.1|Name=mRNA_H-elongata_contig51799.12457.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig51799:485..2647- (Himanthalia elongata Himel1 dioecious)
TTGCTCGGGTCATGGGATGACGATGACAAATGTTTCCTGCAGGCCTTGAA
GGGTTTTGTAGAGAGCGCTGTGAACCTGCTTGATGCGAACAGCGAAGGTG
TCGGCTCGCGCGTCGTGAGCGACTTGTTGAAGAAGAGCGGGCTGGCCGAG
TTGCTCGGGTCATGGGATGACGATGACAAATGTTTCCTGCAGGCCTTGAA
GGGTTTTGTAGAGAGCGCTGTGAACCTGCTTGATGCGAACAGCGAAGGTG
TCGGCTCGCGCGTCGTGAGCGACTTGTTGAAGAAGAGCGGGCTGGCCGAG
TCTTTTATCGATACCATGGTAATTTTCATCAACCAGCGCTTCGAGACCCT
TTTGCAAGCTTTCGATGCCAAGGGCGCCGCGTGTGCGCTCGCGCTTAGGC
TGAGGCGGCACGTTCAGGCGCATGATGCTACCATGGCGGCCCTGGGGATT
CGGACGGGCAGGCGTCGGAGCGCGGGCCGCACAAACGATGAGAGCACTTG
TTTTCGGCCTTCTCGTGAAAGCGACCAAAATTGTGGCCTGGAGGAGCACG
ACCTGCATTCTTTTATCGATACCATGGTAATTTTCATCAACCAGCGCTTC
GAGACCCTTTTGCAAGCTTTCGATGCCAAGGGCGCCGCGTGTGCGCTCGC
GCTTAGGCTGAGGCGGCACGTTCAGGCGCATGATGCTACCATGGCGGCCC
TGGGGATTCGGACGGGCAGGCGTCGGAGCGCGGGCCGCACAAACGATGAG
AGCACTTGTTTTCGGCCTTCTCGTGAAAGCGACCAAAATTGTGGCCTGGA
GGAGCACGACCTGCATCCTGTCGTGCTTTGGCGTCAATGGAAGCGATGTG
GTGGCTACTGGCCGCCGCAACTGCCCGACCCTGATGACATCGAGTTCGGA
GGACCTGACGGCACTTTGAAATTCATCCTGTCGTGCTTTGGCGTCAATGG
AAGCGATGTGGTGGCTACTGGCCGCCGCAACTGCCCGACCCTGATGACAT
CGAGTTCGGAGGACCTGACGGCACTTTGAAATTCATGTCGCAGCTTGACG
ACGGCACCCAAGTGTTCCTCAGAGAAATTTCTCAGCATTTTCTCGAGACT
AGTCTGCCTGAAGATGGAGAGGATTTTGGAGCGGCGTGCAGAGCAGCACC
TAGAAAAGTACGTTATCGAGGTCGCGCTCAACGGCATGAAAAAAAAGAGG
CCGAATACTTAAGGTACATCGAGGAGGCCACGAACCGGCTAGCCCAGCTG
AAAAGCATTGTCCTGGAACCCGTGCTCTGCGAGGTCTTGATGCACCAGGT
GGTTGGGTGAGTCGCAGCTTGACGACGGCACCCAAGTGTTCCTCAGAGAA
ATTTCTCAGCATTTTCTCGAGACTAGTCTGCCTGAAGATGGAGAGGATTT
TGGAGCGGCGTGCAGAGCAGCACCTAGAAAAGTACGTTATCGAGGTCGCG
CTCAACGGCATGAAAAAAAAGAGGCCGAATACTTAAGGTACATCGAGGAG
GCCACGAACCGGCTAGCCCAGCTGAAAAGCATTGTCCTGGAACCCGTGCT
CTGCGAGGTCTTGATGCACCAGGTGGTTGGGTGA
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