mRNA_H-elongata_contig51790.12454.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51790.12454.1
Unique NamemRNA_H-elongata_contig51790.12454.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51790.12454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51790contigH-elongata_contig51790:2652..3593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size449
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51790.12454.1prot_H-elongata_contig51790.12454.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51790 2652..3593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.9413729-CDS-H-elongata_contig51790:2651..28271622930846.9413729-CDS-H-elongata_contig51790:2651..2827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51790 2652..2827 +
1691679595.733068-CDS-H-elongata_contig51790:2651..28271691679595.733068-CDS-H-elongata_contig51790:2651..2827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51790 2652..2827 +
1622930846.964076-CDS-H-elongata_contig51790:3008..30411622930846.964076-CDS-H-elongata_contig51790:3008..3041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51790 3009..3041 +
1691679595.749468-CDS-H-elongata_contig51790:3008..30411691679595.749468-CDS-H-elongata_contig51790:3008..3041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51790 3009..3041 +
1622930846.9803822-CDS-H-elongata_contig51790:3284..33591622930846.9803822-CDS-H-elongata_contig51790:3284..3359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51790 3285..3359 +
1691679595.7599382-CDS-H-elongata_contig51790:3284..33591691679595.7599382-CDS-H-elongata_contig51790:3284..3359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51790 3285..3359 +
1622930847.0035298-CDS-H-elongata_contig51790:3430..35931622930847.0035298-CDS-H-elongata_contig51790:3430..3593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51790 3431..3593 +
1691679595.769026-CDS-H-elongata_contig51790:3430..35931691679595.769026-CDS-H-elongata_contig51790:3430..3593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51790 3431..3593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51790.12454.1

>prot_H-elongata_contig51790.12454.1 ID=prot_H-elongata_contig51790.12454.1|Name=mRNA_H-elongata_contig51790.12454.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
TEPGSGARSGTPTRGSTATSGRGGLAAGVHVTDMTQKLKPLQPREAGSES
LAATNVVRRNRRYSAASTNGQGQERSYTTTVGGFLTLAPHMHLKDCLQRV
RGELREVSDWWHLHHENGIGRVVVGKYVQPLAFDARAVGYSVGVEVLLR
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mRNA from alignment at H-elongata_contig51790:2652..3593+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51790.12454.1 ID=mRNA_H-elongata_contig51790.12454.1|Name=mRNA_H-elongata_contig51790.12454.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=942bp|location=Sequence derived from alignment at H-elongata_contig51790:2652..3593+ (Himanthalia elongata Himel1 dioecious)
ACAGAGCCGGGATCGGGTGCGCGCAGCGGTACACCGACGCGCGGATCGAC
GGCGACGTCTGGCCGCGGGGGCCTCGCAGCCGGAGTGCATGTTACCGATA
TGACGCAAAAACTAAAGCCACTGCAGCCGCGAGAGGCGGGGTCGGAAAGC
CTTGCAGCGACAAACGTTGTTCGAAGGCAAGTAGTATACAAAAATACACA
TGATGATGTATATGTGGTATATAGTATTGTATGCAAAGGAAAACTATAAT
ATTTGATAGTAGTCGGCGTATTCCGTTAATACAGGAATTTTAACTCGAAA
TATGTGTTCAAAGATGCACGCCCTGTCGCATGCTCACACGCCACCGTCGG
TCCCCAGGAATCGACGTTATTCAGCGGCGTCTACTAACGGGTGAGTCCGC
GGTTTGACTGTAGCATAGCGTCCGCCTAGATGTTTTTGTGTCACAGGCCT
AGTTCGTCCGTATCCCCTTCTACGACACAGGAAATGTGGGAATGCAAACC
CTTCGTCGGCGTAAGTAGCGTAGTACGATTACTAGGCCAATGCCGGTCCA
GACTACGCTCTGTAATGCAGAGTACCTGAGTAGTAGTTCGTACGGTTGTC
GTTAACTTCACCCCCACAACTATCGACACGCAGGCAAGGTCAGGAAAGGA
GTTACACAACGACGGTTGGTGGTTTCCTTACGCTAGCGCCACACATGCAT
CTCAAAGACACGGGATGTCGAGGCCCCCTTCAGAGCAATGGAGTTGAGAA
CGAACGGGTGGACGCTATCGGCTTCTGCGTTGTTTGCAAAGGGTGCGGGG
CGAACTTCGGGAAGTGTCCGATTGGTGGCACTTGCACCATGAGAACGGCA
TTGGGCGTGTTGTTGTCGGGAAGTACGTTCAACCACTGGCTTTCGATGCA
CGAGCTGTCGGATACTCTGTTGGCGTCGAAGTCCTCCTTAGG
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Coding sequence (CDS) from alignment at H-elongata_contig51790:2652..3593+

>mRNA_H-elongata_contig51790.12454.1 ID=mRNA_H-elongata_contig51790.12454.1|Name=mRNA_H-elongata_contig51790.12454.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig51790:2652..3593+ (Himanthalia elongata Himel1 dioecious)
ACAGAGCCGGGATCGGGTGCGCGCAGCGGTACACCGACGCGCGGATCGAC
GGCGACGTCTGGCCGCGGGGGCCTCGCAGCCGGAGTGCATGTTACCGATA
TGACGCAAAAACTAAAGCCACTGCAGCCGCGAGAGGCGGGGTCGGAAAGC
CTTGCAGCGACAAACGTTGTTCGAAGACAGAGCCGGGATCGGGTGCGCGC
AGCGGTACACCGACGCGCGGATCGACGGCGACGTCTGGCCGCGGGGGCCT
CGCAGCCGGAGTGCATGTTACCGATATGACGCAAAAACTAAAGCCACTGC
AGCCGCGAGAGGCGGGGTCGGAAAGCCTTGCAGCGACAAACGTTGTTCGA
AGGAATCGACGTTATTCAGCGGCGTCTACTAACGGGAATCGACGTTATTC
AGCGGCGTCTACTAACGGGCAAGGTCAGGAAAGGAGTTACACAACGACGG
TTGGTGGTTTCCTTACGCTAGCGCCACACATGCATCTCAAAGAGCAAGGT
CAGGAAAGGAGTTACACAACGACGGTTGGTGGTTTCCTTACGCTAGCGCC
ACACATGCATCTCAAAGATTGTTTGCAAAGGGTGCGGGGCGAACTTCGGG
AAGTGTCCGATTGGTGGCACTTGCACCATGAGAACGGCATTGGGCGTGTT
GTTGTCGGGAAGTACGTTCAACCACTGGCTTTCGATGCACGAGCTGTCGG
ATACTCTGTTGGCGTCGAAGTCCTCCTTAGGTTGTTTGCAAAGGGTGCGG
GGCGAACTTCGGGAAGTGTCCGATTGGTGGCACTTGCACCATGAGAACGG
CATTGGGCGTGTTGTTGTCGGGAAGTACGTTCAACCACTGGCTTTCGATG
CACGAGCTGTCGGATACTCTGTTGGCGTCGAAGTCCTCCTTAGG
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