mRNA_H-elongata_contig51781.12453.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI) HSP 1 Score: 247 bits (630), Expect = 1.610e-71 Identity = 159/315 (50.48%), Postives = 195/315 (61.90%), Query Frame = 1
Query: 16 NISNTDNKMASSRSIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG--HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKG-------RAPPCVNTTNEDLAETVRANMELVAVEDGTKELNENLV--ENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDLPS-------PPHGR-GPRHGMPCG 903
N N DN M +S SIKINFQG SRDV +P PVTLA LQA +A+ F A+LP RS + DL FTYKDP+GDDIVFDKDSEL LA+RL P +LEISAA K P + +YK+AARNLREY+GVPSMTP KL + L LKL P+ LV++GLAPK LL + + P NEDLAE+V A MEL+++ED KE N+ V E + S +N E ++D P + + IH A +A I++RPREVRPLL+AL V P R KLG+VD KDL + H R GP HG P G
Sbjct: 9 NRDNNDNTMTTS-SIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKE----KKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSLEDDKKEWNDGFVSVEPADTSSPDNDNEEKNDAVAPEVKKNL-IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKRHGPGHGGPRG 317
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE) HSP 1 Score: 246 bits (629), Expect = 2.520e-71 Identity = 162/314 (51.59%), Postives = 194/314 (61.78%), Query Frame = 1
Query: 25 NTDNKMASSRSIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG--HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLL---------RGAMVKGRAPPCVNTTNEDLAETVRANMELVAVEDGTKELNENLV--ENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDLPS-------PPHGR-GPRHGMPCG 903
N D M +S SIKINFQG SRDV++P P TLA LQAA+A+ F +LP RS+ + DL FTYKDP+GDDIVFDKDSELNLALRL P +LEISAA K + T P +YK+AARNLREY+GVPSMTP KL + L LKL P+ LV++GLAPK LL + K R N NEDLAE V A ME ++VED KE N+ V E E S +N E +D P + + IH A +A I++RPREVRPLL+AL V P R KLG+VD KDL + H R GP HG P G
Sbjct: 23 NNDKTMTTS-SIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKE----NKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGKN--NEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEPAETSSSDNGNEEENDDAAPEVKQNL-IHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKRHGPGHGGPRG 328
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI) HSP 1 Score: 241 bits (614), Expect = 1.790e-68 Identity = 150/280 (53.57%), Postives = 183/280 (65.36%), Query Frame = 1
Query: 55 SIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG--HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRA---------PPCVNTTNEDLAETVRANMELVAVEDGTKELNENLV--ENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDL 855
SIKINFQG SRDV +P PVTLA LQAA+A F A+LP RS + DL FTYKDP+GDDIVFDKDSELNLA+RL P +LEISAA K + KP + +YK+AARNLREY+GVPSMTP KL + L L+L P+ LV++GLAPK LL A +K A P NEDLAE+V A MEL++VED KE N+ V E + S N E ++D P + + IH A +A I++RPREVRPLL+AL V P R KLG+V+ KDL
Sbjct: 5 SIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKE----NKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLL--ARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEPADTSSPGNDNEEKNDAVAPEVKKNL-IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDL 277
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE) HSP 1 Score: 232 bits (592), Expect = 6.410e-66 Identity = 147/280 (52.50%), Postives = 178/280 (63.57%), Query Frame = 1
Query: 55 SIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDGHGD--LCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRA---------PPCVNTTNEDLAETVRANMELVAVEDGTKELNENLV--ENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDL 855
SIKI FQG SRDV + PV LA LQAA+A+ F +LP RS + D L FTYKDP+GDDIVFDK+SEL LALRL P +LEISAA K + T P ++YK+AARNLREY+GVPSMTP KL + L LKL P+ LV++GLAPK LL A +K A P NEDLAE+V A MEL++VEDG KE N+ V E E N E ++D + K IH A +A I++RPREVRPLL+AL V P+R KLG+V KDL
Sbjct: 23 SIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKE----NKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLL--ARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFPANDNEEKNDAAPEAK--KNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDL 294
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE) HSP 1 Score: 230 bits (586), Expect = 2.720e-64 Identity = 147/296 (49.66%), Postives = 182/296 (61.49%), Query Frame = 1
Query: 37 KMASSRSIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG--HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRA---------PPCVNTTNEDLAETVRANMELVAVEDGTKELNENLVENTEEKSG------------ENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDL 855
K ++ SIKINFQG SRDV +P PV+LA LQAA+A+ F A+LP RS + DL FTYKDP+GDDIVFDKDSEL LA+RL P +LEISA K S KP + +YK+AARNLREY+GVPSMT KL + L LKL P+ LV++GLAPK LL A +K A P NEDLAE+V A MEL++VED KE N+ V + S +N E ++ P + + IH A + I++RPREVRPLL+AL V P R KLG+VD KDL
Sbjct: 17 KTMTTPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKE----SEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLL--ARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDL-IHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDL 305
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE) HSP 1 Score: 229 bits (585), Expect = 6.930e-64 Identity = 147/290 (50.69%), Postives = 180/290 (62.07%), Query Frame = 1
Query: 55 SIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG--HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRAPPCVNTT---------NEDLAETVRANMELVAVEDGTKELNENLVE------------NTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDL 855
SIKINFQG SR+V + P TLA LQA +A+ F A+LP RS + DL FTYKDP+GDDIVFDKDSELNLA+RL PD+LEISAA K + P KP +YK+AARNLREY+GVPSMT KL + L LKL PR LV++GLAPK LL A +K A + + NEDLAE+V A MEL++VED KE N V + S +N E +D P + + IHTA +A I++RPREVRPLL+AL V P R KLG+V+ K L
Sbjct: 5 SIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGK---ENKPDN-KPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLL--ARMKAEAANNMKVSKVTLGDGENNEDLAESVAAGMELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDAAPEVKKNL-IHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYL 287
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI) HSP 1 Score: 201 bits (510), Expect = 1.460e-55 Identity = 134/270 (49.63%), Postives = 165/270 (61.11%), Query Frame = 1
Query: 37 KMASSRSIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDG--HGDLCFTYKDPEGDDIVFDKDSELNLALRLIPDTLEISAASKVPFQFSPQTAKPHESSEIYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRA---------PPCVNTTNEDLAETVRANMELVAVEDGTKELNENLVE------------NTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPRE 777
KM ++ SIKINFQG SRDV +P PVTL LQAA+A+ F A+LP RS + DL FTYKDP+GDDIVFDKDSEL LA+RL P +LEISAA K S KP + +YK+AARNLREY+GVPSMTP KL + L LKL P+ LV++GLAPK LL A +K A P NEDLA++V A MEL++VED KE N+ V E S +N E +D P + + IH A +A I++RPRE
Sbjct: 14 KMMTTSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKE----SKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLL--ARMKAEAANNAKVSKVPLGDGKNNEDLADSVAAGMELMSVED-KKEWNDGFVSAESDAPAAAAPITAETSSPDNDKEEENDDAAPEVKKNL-IHKAFIAGGIQLRPRE 275
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE) HSP 1 Score: 113 bits (283), Expect = 3.690e-23 Identity = 80/189 (42.33%), Postives = 102/189 (53.97%), Query Frame = 1
Query: 367 IYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRAPPCVNTTNEDLAETVRANMELVAVEDGTKELNENLVENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIVDAKDLP-SPPHGR--GP---RHGMPCGPMDR 915
+YK ARNLREYHGVPSMT D L + + LL+L P LV +GLAP+KLL+G +++ +E + V D + + +N + +R K P+H ALVAA I +RPRE RPLL ALGV PHR VKLG+V ++L S P GR GP RHG P GP R
Sbjct: 26 LYKATARNLREYHGVPSMTADNLEKTMVLLRLRPGRLVVQGLAPEKLLKGFSAADAHADTTDSSGSSGSEVEPEQADDNQVSDDXXX----XXXXSGDTEHDNIRKHNSLGFETNKRSKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELRRSRPGGRRGGPSHLRHGHPGGPGGR 210
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 1.300e-11 Identity = 56/143 (39.16%), Postives = 72/143 (50.35%), Query Frame = 1
Query: 367 IYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRAPPCVNTTNEDLAETV-RANMELVAVEDGTKELNENLVENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLL 792
+YK AARNL EYHGVPSMT L + + LL+L P LV +GLAPK+LL G G A + E + + N N + T+ + A + D ET K PIH VAA +++RPRE RPLL
Sbjct: 51 LYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLEGKSAAGDAXXXXXXXXXXXXXXXXEVDPEQADNNQVSDDSNTNSRDGTDIEHDHVATQDSIDIETGAS--KHPIHAVFVAAGVQLRPRETRPLL 191
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 1.320e-11 Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 1
Query: 367 IYKLAARNLREYHGVPSMTPDKLTRMLTLLKLGPRHLVRRGLAPKKLLRGAMVKGRAPPCVNTTNEDLAETVRANMELVAVEDGTKELNENLVENTEEKSGENAMEMRDDCETPGRRPKMPIHTALVAAEIKIRPREVRPLLIALGVHPHRFVKLGIV 840
++K AARNLREYHGVPS+TP L + LL+L P LV +GLAPK LL+G G + + AE +AN + + +L+ N + + +G + + ++ R K PI VA +++RPRE RPLL + + V L +V
Sbjct: 41 MFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLKGNSTAGVDADSTDGSGGFEAEEEQANNQF------SHDLSSNSSDGGD--TGNDNIVTQNSIGFEARASKHPIQAVFVAVGVQLRPRETRPLLRGVVLLTSSTVALEVV 190 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51781.12453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51781.12453.1 >prot_H-elongata_contig51781.12453.1 ID=prot_H-elongata_contig51781.12453.1|Name=mRNA_H-elongata_contig51781.12453.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=376bp MASSRSIKINFQGESRDVALPTPVTLAGLQAAVASTFSADLPPRSVEDDGback to top mRNA from alignment at H-elongata_contig51781:413..4040+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51781.12453.1 ID=mRNA_H-elongata_contig51781.12453.1|Name=mRNA_H-elongata_contig51781.12453.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3628bp|location=Sequence derived from alignment at H-elongata_contig51781:413..4040+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51781:413..4040+ >mRNA_H-elongata_contig51781.12453.1 ID=mRNA_H-elongata_contig51781.12453.1|Name=mRNA_H-elongata_contig51781.12453.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2256bp|location=Sequence derived from alignment at H-elongata_contig51781:413..4040+ (Himanthalia elongata Himel1 dioecious)back to top |