mRNA_H-elongata_contig51712.12446.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51712.12446.1
Unique NamemRNA_H-elongata_contig51712.12446.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51712.12446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51712contigH-elongata_contig51712:2159..3667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size463
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51712.12446.1prot_H-elongata_contig51712.12446.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51712 2268..3637 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.1784687-UTR-H-elongata_contig51712:2158..22671622930846.1784687-UTR-H-elongata_contig51712:2158..2267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51712 2159..2267 -
1691679595.4402611-UTR-H-elongata_contig51712:2158..22671691679595.4402611-UTR-H-elongata_contig51712:2158..2267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51712 2159..2267 -
1622930846.2488034-UTR-H-elongata_contig51712:3637..36671622930846.2488034-UTR-H-elongata_contig51712:3637..3667Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51712 3638..3667 -
1691679595.470887-UTR-H-elongata_contig51712:3637..36671691679595.470887-UTR-H-elongata_contig51712:3637..3667Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51712 3638..3667 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.2009237-CDS-H-elongata_contig51712:2267..23121622930846.2009237-CDS-H-elongata_contig51712:2267..2312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51712 2268..2312 -
1691679595.4493432-CDS-H-elongata_contig51712:2267..23121691679595.4493432-CDS-H-elongata_contig51712:2267..2312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51712 2268..2312 -
1622930846.2288237-CDS-H-elongata_contig51712:3358..36371622930846.2288237-CDS-H-elongata_contig51712:3358..3637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51712 3359..3637 -
1691679595.4589992-CDS-H-elongata_contig51712:3358..36371691679595.4589992-CDS-H-elongata_contig51712:3358..3637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51712 3359..3637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51712.12446.1

>prot_H-elongata_contig51712.12446.1 ID=prot_H-elongata_contig51712.12446.1|Name=mRNA_H-elongata_contig51712.12446.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MGDREKKPLEHGTSNGDGSPKRLRPATPQVPACRSVTAMFLLVIATTVVA
VLEDRTQQQQKKRQGVIERPRIDWGEHMARSIREKTFRRKYRLASTRARE
WCLWGPA*
back to top

mRNA from alignment at H-elongata_contig51712:2159..3667-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51712.12446.1 ID=mRNA_H-elongata_contig51712.12446.1|Name=mRNA_H-elongata_contig51712.12446.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1509bp|location=Sequence derived from alignment at H-elongata_contig51712:2159..3667- (Himanthalia elongata Himel1 dioecious)
GAGACATCATCTCCGCACCACACAGACTTGATGGGAGACCGTGAGAAGAA
GCCACTGGAACATGGGACGTCGAATGGTGATGGCAGCCCAAAGCGCCTCC
GGCCTGCTACGCCCCAAGTTCCAGCGTGTAGAAGTGTCACTGCCATGTTT
CTGCTGGTCATCGCGACTACTGTAGTCGCGGTTCTCGAAGACAGGACACA
GCAGCAACAGAAGAAGCGGCAAGGAGTCATCGAACGCCCGCGAATAGACT
GGGGTGAGCACATGGCTAGGTCAATCAGGGAAAAGACCTTCAGGCGTAAA
TACAGGCTGGTGAGTCTACTGAGGCTGGTGAGTCTACTGAGGCCAGCACT
GGAGAGGAATGCCGACCTCGTACGTGAGTTCTTGTTCGCCCTTTTCGCCC
TTTTTTATGGCTGGTCCAGTCAGCGCTTGTCTGGTCGCAGCTACGATCAT
ACGTACGTATTGATGTATCTCGGTGGAAAGGTTCACCTTAGCAACGACGT
GCCCGCAGACAAAATGTGAAGTGGGTTCAGCAATCAGGTTACTGCTGTTG
TGCAGCTCAATCTACAGCCTCAGCAGTTTCATTTCAGCTCTGGGTTTGTT
CGGGTTCGCCCTCTCCATCTCATTTTCTTGTTTTCAGCAGCGCTTGTTTG
GCAGTTTGGACTTGTCCCCGTATATGTTTGGGAAAGGTGCCACCAACAAA
AGTGTGATGCGAGAGCAGCAGTGAAGGTTCTGGTAGAGCGGTGCAGTTCC
CTGACTCGTCCGCAGGAGTGCACCAGAGGGAGTATCGTTTTTTTGCAGCA
GGGTGCTGTCAGCTGTAGATATGTTGTTTCCCGTCCTGTCGCGCTGATGA
TGATGATGAGTTCTAATTGGCCCTCGTTTGGTGTTGTTTTCAGTCGCCAA
GCCCATGTTGGACCTATCGCTATTGGTCGGGGGGAAGGCGCAACGTAGCA
GGACGGTGCCCTCCAGCACTGAACCCTAGTGAGATGCAAGTGCAGCAGTC
AGTGCTGTACAGCAGCAGCAGTAGAGCGTAGTTTCATACAAGTACAGCAG
TCAGTGCTGTACAGAAATTAGGGTGTCGTTTATTCATAATTGCACCGCCG
TGGCAAACAGGATTGGGAGACATCGCTTTCTCCGAAATCCTCCTCGCAAG
TGGATACCCTTGCGGCCTAAAAATCGTCGCTTCAAATATATGTGGAAGTT
ATCTTCGTCCTTCATTTAAAACTCTTCTCGTTTTTTAATAGCAAGTCGCA
GTGGTGATGTGTGCGTCTCTTTGAAAAATGAGGGGACTTTCTTTGCTTGG
CCGTTGAAATGTTTAGCTGTTCTTTCCCACCCTGAATGATGTGCTCCGCG
TGCAGGCCTCCACACGAGCTCGGGAGTGGTGTCTGTGGGGTCCCGCGTAG
CTATCACTCTTCGAATACCACCGCCGTCTTGTACAGCGTGGAACGGACAG
GATGTAGATGTGTAGAGAGAGGGACCAAAGAACTTTTGAATTAAAAAAAA
ATCTTCCTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51712:2159..3667-

>mRNA_H-elongata_contig51712.12446.1 ID=mRNA_H-elongata_contig51712.12446.1|Name=mRNA_H-elongata_contig51712.12446.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig51712:2159..3667- (Himanthalia elongata Himel1 dioecious)
ATGGGAGACCGTGAGAAGAAGCCACTGGAACATGGGACGTCGAATGGTGA
TGGCAGCCCAAAGCGCCTCCGGCCTGCTACGCCCCAAGTTCCAGCGTGTA
GAAGTGTCACTGCCATGTTTCTGCTGGTCATCGCGACTACTGTAGTCGCG
GTTCTCGAAGACAGGACACAGCAGCAACAGAAGAAGCGGCAAGGAGTCAT
CGAACGCCCGCGAATAGACTGGGGTGAGCACATGGCTAGGTCAATCAGGG
AAAAGACCTTCAGGCGTAAATACAGGCTGATGGGAGACCGTGAGAAGAAG
CCACTGGAACATGGGACGTCGAATGGTGATGGCAGCCCAAAGCGCCTCCG
GCCTGCTACGCCCCAAGTTCCAGCGTGTAGAAGTGTCACTGCCATGTTTC
TGCTGGTCATCGCGACTACTGTAGTCGCGGTTCTCGAAGACAGGACACAG
CAGCAACAGAAGAAGCGGCAAGGAGTCATCGAACGCCCGCGAATAGACTG
GGGTGAGCACATGGCTAGGTCAATCAGGGAAAAGACCTTCAGGCGTAAAT
ACAGGCTGGCCTCCACACGAGCTCGGGAGTGGTGTCTGTGGGGTCCCGCG
TAGGCCTCCACACGAGCTCGGGAGTGGTGTCTGTGGGGTCCCGCGTAG
back to top