mRNA_H-elongata_contig51688.12444.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51688.12444.1
Unique NamemRNA_H-elongata_contig51688.12444.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51688.12444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51688contigH-elongata_contig51688:2929..3721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size793
Cds size792
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.02392-CDS-H-elongata_contig51688:2928..37201622930846.02392-CDS-H-elongata_contig51688:2928..3720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51688 2929..3720 +
1691679595.394662-CDS-H-elongata_contig51688:2928..37201691679595.394662-CDS-H-elongata_contig51688:2928..3720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51688 2929..3720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51688.12444.1prot_H-elongata_contig51688.12444.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51688 2929..3720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51688.12444.1

>prot_H-elongata_contig51688.12444.1 ID=prot_H-elongata_contig51688.12444.1|Name=mRNA_H-elongata_contig51688.12444.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
ETSSWTGPTVATVPATTTAIKYLENPTVADQGPANAGTVAMGVKSPVLGP
GVGAVLERGVGGFASPGLSEYERLLGSLGAESNAGADAGERRRVNCGREN
GQSRCALVARGDNLSARRGGVSSWKQSHDSSIGKTSNAAVGYWSEEAVGV
AAADTGARDAGEVAGSERCRARRDRRQSLEDVRGKKHTTSIDSGTGTAMA
TAYIDRSTIDGCHRRDRHRAEEDSDGEVPLSKLVEEKTAREFLRLLSERS
SSLISDAPASINDG
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mRNA from alignment at H-elongata_contig51688:2929..3721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51688.12444.1 ID=mRNA_H-elongata_contig51688.12444.1|Name=mRNA_H-elongata_contig51688.12444.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=793bp|location=Sequence derived from alignment at H-elongata_contig51688:2929..3721+ (Himanthalia elongata Himel1 dioecious)
GAAACGTCTTCTTGGACCGGGCCTACTGTTGCCACCGTCCCTGCCACCAC
CACCGCTATCAAATATTTAGAAAACCCCACCGTTGCCGATCAAGGACCAG
CTAACGCGGGAACAGTGGCCATGGGAGTGAAGTCACCAGTCTTGGGACCA
GGGGTTGGTGCGGTCTTAGAGCGAGGAGTGGGAGGGTTCGCATCTCCCGG
CTTGAGCGAGTACGAACGCCTTCTGGGATCGTTGGGTGCAGAAAGCAATG
CCGGTGCTGATGCTGGGGAGCGGCGGAGAGTTAACTGCGGGCGGGAGAAT
GGACAATCGCGGTGCGCACTGGTCGCCCGCGGTGACAACCTTTCAGCGCG
TCGTGGAGGCGTCAGCTCTTGGAAGCAGAGCCACGACTCATCGATCGGCA
AAACCTCTAACGCAGCCGTAGGGTACTGGAGTGAAGAGGCAGTCGGCGTC
GCTGCCGCGGATACGGGCGCGAGGGATGCTGGGGAAGTCGCAGGCTCTGA
ACGGTGTAGAGCCAGAAGAGACCGACGACAATCCCTCGAGGACGTTCGCG
GCAAAAAACATACGACATCGATTGATTCCGGGACTGGAACCGCGATGGCG
ACCGCGTACATAGATCGGTCGACGATTGATGGCTGCCACCGTCGTGACCG
CCACCGAGCAGAGGAAGACTCGGATGGAGAGGTTCCGCTTTCTAAACTCG
TGGAGGAAAAAACAGCGCGAGAATTTCTCCGCCTCCTCAGCGAGCGGTCC
TCCTCCTTGATATCTGACGCACCGGCTTCCATAAATGATGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig51688:2929..3721+

>mRNA_H-elongata_contig51688.12444.1 ID=mRNA_H-elongata_contig51688.12444.1|Name=mRNA_H-elongata_contig51688.12444.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig51688:2929..3721+ (Himanthalia elongata Himel1 dioecious)
GAAACGTCTTCTTGGACCGGGCCTACTGTTGCCACCGTCCCTGCCACCAC
CACCGCTATCAAATATTTAGAAAACCCCACCGTTGCCGATCAAGGACCAG
CTAACGCGGGAACAGTGGCCATGGGAGTGAAGTCACCAGTCTTGGGACCA
GGGGTTGGTGCGGTCTTAGAGCGAGGAGTGGGAGGGTTCGCATCTCCCGG
CTTGAGCGAGTACGAACGCCTTCTGGGATCGTTGGGTGCAGAAAGCAATG
CCGGTGCTGATGCTGGGGAGCGGCGGAGAGTTAACTGCGGGCGGGAGAAT
GGACAATCGCGGTGCGCACTGGTCGCCCGCGGTGACAACCTTTCAGCGCG
TCGTGGAGGCGTCAGCTCTTGGAAGCAGAGCCACGACTCATCGATCGGCA
AAACCTCTAACGCAGCCGTAGGGTACTGGAGTGAAGAGGCAGTCGGCGTC
GCTGCCGCGGATACGGGCGCGAGGGATGCTGGGGAAGTCGCAGGCTCTGA
ACGGTGTAGAGCCAGAAGAGACCGACGACAATCCCTCGAGGACGTTCGCG
GCAAAAAACATACGACATCGATTGATTCCGGGACTGGAACCGCGATGGCG
ACCGCGTACATAGATCGGTCGACGATTGATGGCTGCCACCGTCGTGACCG
CCACCGAGCAGAGGAAGACTCGGATGGAGAGGTTCCGCTTTCTAAACTCG
TGGAGGAAAAAACAGCGCGAGAATTTCTCCGCCTCCTCAGCGAGCGGTCC
TCCTCCTTGATATCTGACGCACCGGCTTCCATAAATGATGGGGAAACGTC
TTCTTGGACCGGGCCTACTGTTGCCACCGTCCCTGCCACCACCACCGCTA
TCAAATATTTAGAAAACCCCACCGTTGCCGATCAAGGACCAGCTAACGCG
GGAACAGTGGCCATGGGAGTGAAGTCACCAGTCTTGGGACCAGGGGTTGG
TGCGGTCTTAGAGCGAGGAGTGGGAGGGTTCGCATCTCCCGGCTTGAGCG
AGTACGAACGCCTTCTGGGATCGTTGGGTGCAGAAAGCAATGCCGGTGCT
GATGCTGGGGAGCGGCGGAGAGTTAACTGCGGGCGGGAGAATGGACAATC
GCGGTGCGCACTGGTCGCCCGCGGTGACAACCTTTCAGCGCGTCGTGGAG
GCGTCAGCTCTTGGAAGCAGAGCCACGACTCATCGATCGGCAAAACCTCT
AACGCAGCCGTAGGGTACTGGAGTGAAGAGGCAGTCGGCGTCGCTGCCGC
GGATACGGGCGCGAGGGATGCTGGGGAAGTCGCAGGCTCTGAACGGTGTA
GAGCCAGAAGAGACCGACGACAATCCCTCGAGGACGTTCGCGGCAAAAAA
CATACGACATCGATTGATTCCGGGACTGGAACCGCGATGGCGACCGCGTA
CATAGATCGGTCGACGATTGATGGCTGCCACCGTCGTGACCGCCACCGAG
CAGAGGAAGACTCGGATGGAGAGGTTCCGCTTTCTAAACTCGTGGAGGAA
AAAACAGCGCGAGAATTTCTCCGCCTCCTCAGCGAGCGGTCCTCCTCCTT
GATATCTGACGCACCGGCTTCCATAAATGATGGG
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