mRNA_H-elongata_contig5168.12443.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: D7FPN2_ECTSI (CC2D2AN-C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN2_ECTSI) HSP 1 Score: 240 bits (612), Expect = 1.100e-69 Identity = 126/201 (62.69%), Postives = 135/201 (67.16%), Query Frame = 2
Query: 2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQEDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASITP 604
CPL+D+A V SQ+NVWACL RNVRPCDLNLDLSD KTW RWRSKRSHTAFNADVSNRLAELLPLLEKQ+L G KMG +EHRRRL TMR+RDIVGFPL SGF DVD VVQ V+ATGIHEARHP+VQFALAVQ F YP NVLS+WVYIASITP
Sbjct: 1634 CPLIDIACVASQENVWACLRRNVRPCDLNLDLSDSKTW-------------------------------------------------RWRSKRSHTAFNADVSNRLAELLPLLEKQALTGGAKMGKDEHRRRLENTMRNRDIVGFPLHSGFVDVDSVVQTVRATGIHEARHPDVQFALAVQAFPYPHNVLSVWVYIASITP 1785
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A836CHA3_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHA3_9STRA) HSP 1 Score: 215 bits (548), Expect = 4.370e-61 Identity = 109/202 (53.96%), Postives = 142/202 (70.30%), Query Frame = 2
Query: 2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQEDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASITPR 607
CPL++V VIS NVWA + R+ +P +++ D W P+F+ VNPA +Q + YR T +FVY+VEDL+RE +KRD+RRWR+K+ T+FNADVSNRLAE+LPLLE+Q GET +G+ L MR R+IVGFPL + F V V +++ATG+H+A+HPEVQFALAVQ F Y NVLS+WVYIASITPR
Sbjct: 1562 CPLIEVGCVISAANVWANVQRSAKPWEMSWDTRQTSAWRPYFAPGVNPALDPPPQPLQPPLVYRATDVAFVYKVEDLLRETIKRDVRRWRAKKGPTSFNADVSNRLAEVLPLLEQQE-RGETPLGDVTTSS-LESIMRQRNIVGFPLHAAFTSVTDVSALIRATGVHDAKHPEVQFALAVQCFPYCNNVLSVWVYIASITPR 1761
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A7S3HJT6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJT6_9STRA) HSP 1 Score: 145 bits (365), Expect = 7.690e-39 Identity = 81/222 (36.49%), Postives = 126/222 (56.76%), Query Frame = 2
Query: 2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQEDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKR--SHTAFNADVSNRLAELLPLLEKQSLHGETKM----GNE-----------EHRR----RLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASITP 604
CPL DV + + +NVWA + + RP +L+ DL + W PFF S P P+ G T+Q DI+Y T + E+E V ++++ IR+WRSKR S T F+ D + + +LLP LE G + GN+ E +R ++ +R+R + GFPL F DV++++ +K GIHE++HPEVQF +AV+ F N+LS+WV++ ++ P
Sbjct: 103 CPLRDVYLLATPNNVWANIQVSARPAELSFDLLNVSEWRPFFGSRY-PLPAGGLNTVQTDIEYVETSPGYALEIEKAVFQSIRNRIRKWRSKRQRSTTTFHPDACSVMHDLLPKLENWKRSGNPEAFENGGNDNVPVDQSGALTELQRLAQDKMKSLLRTRTLRGFPLNVPFTDVEELLTKIKTMGIHESKHPEVQFVMAVRAFPLYNNILSLWVFLGTLEP 323
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A7S4VR85_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VR85_9STRA) HSP 1 Score: 137 bits (346), Expect = 2.270e-36 Identity = 75/202 (37.13%), Postives = 118/202 (58.42%), Query Frame = 2
Query: 2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQED-IKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASITP 604
CPL +++ V+S N +A + +PC ++ D + W PF+S P P+ +IQE + Y + F E+E+ + + +K IR WR R+ T+F DVSNRL +L LE LHG++ + ++ R+ + R + G PL F DV VV V+ T IHE++HP+V+FALAV+ F Y NVLS+W++I +++P
Sbjct: 88 CPLQNISCVVSYKNTYANIQPEGKPCQIDFDFENRLLWKPFYSKKF-PLPNSHLPSIQEPKLLYTDPNKQFSAELEEELLDTIKNSIRGWR--RAPTSFRGDVSNRLYGILEQLEDVRLHGKS-LSVDDCITRVDSITKGRLVFGMPLHFPFTDVKDVVNGVEFTAIHESKHPDVEFALAVRVFPYASNVLSVWIFICALSP 285
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: UPI001F048C62 (LOW QUALITY PROTEIN: coiled-coil and C2 domain-containing protein 2A-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F048C62) HSP 1 Score: 132 bits (333), Expect = 3.080e-32 Identity = 69/203 (33.99%), Postives = 116/203 (57.14%), Query Frame = 2
Query: 2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQ-EDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASITPR 607
CPL ++A +I+ +N+WA + + +PC ++ DLS K W PFF+ P+ G +++Q E ++Y T +V+E+++ + L+ I WRS T +N S +LL +E H + +H+ L + + S + GFPL F D++ V+ +V +TG+H P V+FALAV YP NVLS+W+Y+A++T +
Sbjct: 987 CPLQNIACLINNENIWANVQLSGQPCRISFDLSQSKLWKPFFTKKY---PNPGLSSVQRERLQYVTTDPQYVFELQEKIEHLLRDKIMEWRSH-FVTRWNRYCSQSFRDLLVNME----HTYRQRTIHDHKAELNQVLSSYKLSGFPLHMAFTDINPVINIVHSTGVHLTEDPNVEFALAVHIHPYPGNVLSLWIYVATLTRK 1181
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A6J0USJ3_9SAUR (coiled-coil and C2 domain-containing protein 2A isoform X1 n=4 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0USJ3_9SAUR) HSP 1 Score: 131 bits (329), Expect = 1.090e-31 Identity = 73/200 (36.50%), Postives = 117/200 (58.50%), Query Frame = 2
Query: 2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQ-EDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASI 598
CPL +V +IS DNVW + + P +N D+S K W PFFS ++ P G +++Q E++ Y+P ++ E++ + + LK I WR R T +N ++ L LP+LEK HG K ++H+ L K + + GFP+ F++V +++ V +TG+H P V+FALAV AYP+N+LS+W+Y+AS+
Sbjct: 1339 CPLQNVGCLISCDNVWFNIQQYDSPLRINFDVSKPKLWKPFFSRSL---PFPGLSSVQPEELFYQPANKAAALELQSRLEKILKEKIMEWRP-RHLTRWNRYCTSTLRHFLPVLEKN--HG--KGVEDDHQAELQKQLGDYRVSGFPIHRPFSEVTSLIEAVYSTGVHTTDIPNVEFALAVYVHAYPKNILSVWIYVASL 1530
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A6P8R442_GEOSA (coiled-coil and C2 domain-containing protein 2A isoform X1 n=6 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8R442_GEOSA) HSP 1 Score: 130 bits (327), Expect = 2.030e-31 Identity = 71/200 (35.50%), Postives = 112/200 (56.00%), Query Frame = 2
Query: 2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQ-EDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASI 598
CPL V +I DN+W + + P +N D+ K W FFS + P G +++Q E++ Y PT ++ E++D + + LK I WRS R T +N ++ L LPLLE+ + K ++H+ L K + GFP+ F+D+ +V+ V +TG+H P V+FALAV AYP+N+LS+W+Y+AS+
Sbjct: 1396 CPLQSVGCLIGMDNIWFNIQKYDSPVSINFDVKRPKLWKSFFSRSF---PYPGLSSVQPEELIYHPTDKAATAELQDRIEKILKEKIMDWRS-RHPTRWNRYCTSTLRHFLPLLEQN----QGKDVGDDHQAELQKQLGDYRFSGFPIHMAFSDIRPLVEAVYSTGVHNTEVPNVEFALAVYVCAYPKNILSVWIYVASL 1587
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A5N5LVF1_PANHP (C2 domain-containing protein n=2 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=A0A5N5LVF1_PANHP) HSP 1 Score: 129 bits (325), Expect = 3.780e-31 Identity = 75/200 (37.50%), Postives = 112/200 (56.00%), Query Frame = 2
Query: 2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQ-EDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASI 598
CPL V +++ DNVW + P + D++ K W PFFS A PS G +++Q E++ YR T+++ E++D + + L+ I WR R T +N ++ L LP LE+ G ++ EEHR L + I GFPL F+++ +V+ V +TG+H P V+FALAV YP NVLS+WVYIAS+
Sbjct: 1456 CPLQTVGCLVNADNVWFNIQPYTTPMRMGFDVTKPKCWKPFFSRAF---PSPGLSSVQPEELVYRRTEKAAAAELQDRIEKVLREKIMEWRP-RHPTRWNRYCTSTLRHFLPKLERS---GGREVA-EEHRLELQSLLGDYRISGFPLHLPFSEIRPIVEAVHSTGVHNVEAPNVEFALAVYVHPYPSNVLSVWVYIASL 1647
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A2D4INJ6_MICLE (Uncharacterized protein (Fragment) n=2 Tax=Micrurus lemniscatus TaxID=129464 RepID=A0A2D4INJ6_MICLE) HSP 1 Score: 124 bits (311), Expect = 4.340e-31 Identity = 68/200 (34.00%), Postives = 113/200 (56.50%), Query Frame = 2
Query: 2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQ-EDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASI 598
CPL V+ +IS DNVW + + P +N D++ K W PFFS ++ P G +++Q E++ Y+ +S +++ + + LK I WR T +N ++ L + LPLLEK + K E+H+ L + + + GFP+ F+DV +V+ +TG+H+ P +FALAV AYP+ +LS+W+Y+AS+
Sbjct: 107 CPLKRVSCLISADNVWFNIQQYDSPPRINFDVNKTKFWKPFFSRSL---PFSGLSSVQPEELFYQNADKSVALHLQNRLEKILKEKIMEWRPNHL-TRWNRYCTSALRQFLPLLEKH----QGKEAEEDHQAELQRQLGDYRVSGFPIHLPFSDVASIVEAAYSTGVHKTEIPNTEFALAVYVHAYPKQILSVWIYVASL 298
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A8B9H7F3_ASTMX (Coiled-coil and C2 domain containing 2A n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9H7F3_ASTMX) HSP 1 Score: 129 bits (324), Expect = 5.090e-31 Identity = 73/200 (36.50%), Postives = 113/200 (56.50%), Query Frame = 2
Query: 2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQ-EDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASI 598
CPL V +++ DNVW + P ++ D++ K W PFFS + P G +++Q ED+ YR T +++ E++D + + L+ I WR R T +N ++ L + LP LE + G ++ EEHR L + I GFPL F+++ +++ V +TG+H P V+FALAV YP NVLS+WVYIAS+
Sbjct: 1278 CPLQTVGCLVNADNVWFNIQLYATPIRMSFDVTKPKFWKPFFSRSF---PDPGLSSVQPEDLVYRRTDKAYAAELQDRIEKILREKIMEWRP-RHPTRWNRYCTSTLRQFLPKLE---MSGGREVA-EEHRLELQSLLGDYRISGFPLHLPFSEIRPIIEAVYSTGVHNVEAPNVEFALAVYVHPYPSNVLSVWVYIASL 1469 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5168.12443.1 >prot_H-elongata_contig5168.12443.1 ID=prot_H-elongata_contig5168.12443.1|Name=mRNA_H-elongata_contig5168.12443.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp MDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGback to top mRNA from alignment at H-elongata_contig5168:5710..7697+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5168.12443.1 ID=mRNA_H-elongata_contig5168.12443.1|Name=mRNA_H-elongata_contig5168.12443.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1988bp|location=Sequence derived from alignment at H-elongata_contig5168:5710..7697+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5168:5710..7697+ >mRNA_H-elongata_contig5168.12443.1 ID=mRNA_H-elongata_contig5168.12443.1|Name=mRNA_H-elongata_contig5168.12443.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig5168:5710..7697+ (Himanthalia elongata Himel1 dioecious)back to top |