mRNA_H-elongata_contig5168.12443.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5168.12443.1
Unique NamemRNA_H-elongata_contig5168.12443.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: D7FPN2_ECTSI (CC2D2AN-C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN2_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 1.100e-69
Identity = 126/201 (62.69%), Postives = 135/201 (67.16%), Query Frame = 2
Query:    2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQEDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASITP 604
            CPL+D+A V SQ+NVWACL RNVRPCDLNLDLSD KTW                                                 RWRSKRSHTAFNADVSNRLAELLPLLEKQ+L G  KMG +EHRRRL  TMR+RDIVGFPL SGF DVD VVQ V+ATGIHEARHP+VQFALAVQ F YP NVLS+WVYIASITP
Sbjct: 1634 CPLIDIACVASQENVWACLRRNVRPCDLNLDLSDSKTW-------------------------------------------------RWRSKRSHTAFNADVSNRLAELLPLLEKQALTGGAKMGKDEHRRRLENTMRNRDIVGFPLHSGFVDVDSVVQTVRATGIHEARHPDVQFALAVQAFPYPHNVLSVWVYIASITP 1785          
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A836CHA3_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHA3_9STRA)

HSP 1 Score: 215 bits (548), Expect = 4.370e-61
Identity = 109/202 (53.96%), Postives = 142/202 (70.30%), Query Frame = 2
Query:    2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQEDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASITPR 607
            CPL++V  VIS  NVWA + R+ +P +++ D      W P+F+  VNPA       +Q  + YR T  +FVY+VEDL+RE +KRD+RRWR+K+  T+FNADVSNRLAE+LPLLE+Q   GET +G+      L   MR R+IVGFPL + F  V  V  +++ATG+H+A+HPEVQFALAVQ F Y  NVLS+WVYIASITPR
Sbjct: 1562 CPLIEVGCVISAANVWANVQRSAKPWEMSWDTRQTSAWRPYFAPGVNPALDPPPQPLQPPLVYRATDVAFVYKVEDLLRETIKRDVRRWRAKKGPTSFNADVSNRLAEVLPLLEQQE-RGETPLGDVTTSS-LESIMRQRNIVGFPLHAAFTSVTDVSALIRATGVHDAKHPEVQFALAVQCFPYCNNVLSVWVYIASITPR 1761          
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A7S3HJT6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJT6_9STRA)

HSP 1 Score: 145 bits (365), Expect = 7.690e-39
Identity = 81/222 (36.49%), Postives = 126/222 (56.76%), Query Frame = 2
Query:    2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQEDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKR--SHTAFNADVSNRLAELLPLLEKQSLHGETKM----GNE-----------EHRR----RLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASITP 604
            CPL DV  + + +NVWA +  + RP +L+ DL +   W PFF S   P P+ G  T+Q DI+Y  T   +  E+E  V ++++  IR+WRSKR  S T F+ D  + + +LLP LE     G  +     GN+           E +R    ++   +R+R + GFPL   F DV++++  +K  GIHE++HPEVQF +AV+ F    N+LS+WV++ ++ P
Sbjct:  103 CPLRDVYLLATPNNVWANIQVSARPAELSFDLLNVSEWRPFFGSRY-PLPAGGLNTVQTDIEYVETSPGYALEIEKAVFQSIRNRIRKWRSKRQRSTTTFHPDACSVMHDLLPKLENWKRSGNPEAFENGGNDNVPVDQSGALTELQRLAQDKMKSLLRTRTLRGFPLNVPFTDVEELLTKIKTMGIHESKHPEVQFVMAVRAFPLYNNILSLWVFLGTLEP 323          
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A7S4VR85_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VR85_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.270e-36
Identity = 75/202 (37.13%), Postives = 118/202 (58.42%), Query Frame = 2
Query:    2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQED-IKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASITP 604
            CPL +++ V+S  N +A +    +PC ++ D  +   W PF+S    P P+    +IQE  + Y    + F  E+E+ + + +K  IR WR  R+ T+F  DVSNRL  +L  LE   LHG++ +  ++   R+    + R + G PL   F DV  VV  V+ T IHE++HP+V+FALAV+ F Y  NVLS+W++I +++P
Sbjct:   88 CPLQNISCVVSYKNTYANIQPEGKPCQIDFDFENRLLWKPFYSKKF-PLPNSHLPSIQEPKLLYTDPNKQFSAELEEELLDTIKNSIRGWR--RAPTSFRGDVSNRLYGILEQLEDVRLHGKS-LSVDDCITRVDSITKGRLVFGMPLHFPFTDVKDVVNGVEFTAIHESKHPDVEFALAVRVFPYASNVLSVWIFICALSP 285          
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: UPI001F048C62 (LOW QUALITY PROTEIN: coiled-coil and C2 domain-containing protein 2A-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F048C62)

HSP 1 Score: 132 bits (333), Expect = 3.080e-32
Identity = 69/203 (33.99%), Postives = 116/203 (57.14%), Query Frame = 2
Query:    2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQ-EDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASITPR 607
            CPL ++A +I+ +N+WA +  + +PC ++ DLS  K W PFF+      P+ G +++Q E ++Y  T   +V+E+++ +   L+  I  WRS    T +N   S    +LL  +E    H   +    +H+  L + + S  + GFPL   F D++ V+ +V +TG+H    P V+FALAV    YP NVLS+W+Y+A++T +
Sbjct:  987 CPLQNIACLINNENIWANVQLSGQPCRISFDLSQSKLWKPFFTKKY---PNPGLSSVQRERLQYVTTDPQYVFELQEKIEHLLRDKIMEWRSH-FVTRWNRYCSQSFRDLLVNME----HTYRQRTIHDHKAELNQVLSSYKLSGFPLHMAFTDINPVINIVHSTGVHLTEDPNVEFALAVHIHPYPGNVLSLWIYVATLTRK 1181          
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A6J0USJ3_9SAUR (coiled-coil and C2 domain-containing protein 2A isoform X1 n=4 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0USJ3_9SAUR)

HSP 1 Score: 131 bits (329), Expect = 1.090e-31
Identity = 73/200 (36.50%), Postives = 117/200 (58.50%), Query Frame = 2
Query:    2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQ-EDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASI 598
            CPL +V  +IS DNVW  + +   P  +N D+S  K W PFFS ++   P  G +++Q E++ Y+P  ++   E++  + + LK  I  WR  R  T +N   ++ L   LP+LEK   HG  K   ++H+  L K +    + GFP+   F++V  +++ V +TG+H    P V+FALAV   AYP+N+LS+W+Y+AS+
Sbjct: 1339 CPLQNVGCLISCDNVWFNIQQYDSPLRINFDVSKPKLWKPFFSRSL---PFPGLSSVQPEELFYQPANKAAALELQSRLEKILKEKIMEWRP-RHLTRWNRYCTSTLRHFLPVLEKN--HG--KGVEDDHQAELQKQLGDYRVSGFPIHRPFSEVTSLIEAVYSTGVHTTDIPNVEFALAVYVHAYPKNILSVWIYVASL 1530          
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A6P8R442_GEOSA (coiled-coil and C2 domain-containing protein 2A isoform X1 n=6 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8R442_GEOSA)

HSP 1 Score: 130 bits (327), Expect = 2.030e-31
Identity = 71/200 (35.50%), Postives = 112/200 (56.00%), Query Frame = 2
Query:    2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQ-EDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASI 598
            CPL  V  +I  DN+W  + +   P  +N D+   K W  FFS +    P  G +++Q E++ Y PT ++   E++D + + LK  I  WRS R  T +N   ++ L   LPLLE+     + K   ++H+  L K +      GFP+   F+D+  +V+ V +TG+H    P V+FALAV   AYP+N+LS+W+Y+AS+
Sbjct: 1396 CPLQSVGCLIGMDNIWFNIQKYDSPVSINFDVKRPKLWKSFFSRSF---PYPGLSSVQPEELIYHPTDKAATAELQDRIEKILKEKIMDWRS-RHPTRWNRYCTSTLRHFLPLLEQN----QGKDVGDDHQAELQKQLGDYRFSGFPIHMAFSDIRPLVEAVYSTGVHNTEVPNVEFALAVYVCAYPKNILSVWIYVASL 1587          
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A5N5LVF1_PANHP (C2 domain-containing protein n=2 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=A0A5N5LVF1_PANHP)

HSP 1 Score: 129 bits (325), Expect = 3.780e-31
Identity = 75/200 (37.50%), Postives = 112/200 (56.00%), Query Frame = 2
Query:    2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQ-EDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASI 598
            CPL  V  +++ DNVW  +     P  +  D++  K W PFFS A    PS G +++Q E++ YR T+++   E++D + + L+  I  WR  R  T +N   ++ L   LP LE+    G  ++  EEHR  L   +    I GFPL   F+++  +V+ V +TG+H    P V+FALAV    YP NVLS+WVYIAS+
Sbjct: 1456 CPLQTVGCLVNADNVWFNIQPYTTPMRMGFDVTKPKCWKPFFSRAF---PSPGLSSVQPEELVYRRTEKAAAAELQDRIEKVLREKIMEWRP-RHPTRWNRYCTSTLRHFLPKLERS---GGREVA-EEHRLELQSLLGDYRISGFPLHLPFSEIRPIVEAVHSTGVHNVEAPNVEFALAVYVHPYPSNVLSVWVYIASL 1647          
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A2D4INJ6_MICLE (Uncharacterized protein (Fragment) n=2 Tax=Micrurus lemniscatus TaxID=129464 RepID=A0A2D4INJ6_MICLE)

HSP 1 Score: 124 bits (311), Expect = 4.340e-31
Identity = 68/200 (34.00%), Postives = 113/200 (56.50%), Query Frame = 2
Query:    2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQ-EDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASI 598
            CPL  V+ +IS DNVW  + +   P  +N D++  K W PFFS ++   P  G +++Q E++ Y+   +S    +++ + + LK  I  WR     T +N   ++ L + LPLLEK     + K   E+H+  L + +    + GFP+   F+DV  +V+   +TG+H+   P  +FALAV   AYP+ +LS+W+Y+AS+
Sbjct:  107 CPLKRVSCLISADNVWFNIQQYDSPPRINFDVNKTKFWKPFFSRSL---PFSGLSSVQPEELFYQNADKSVALHLQNRLEKILKEKIMEWRPNHL-TRWNRYCTSALRQFLPLLEKH----QGKEAEEDHQAELQRQLGDYRVSGFPIHLPFSDVASIVEAAYSTGVHKTEIPNTEFALAVYVHAYPKQILSVWIYVASL 298          
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Match: A0A8B9H7F3_ASTMX (Coiled-coil and C2 domain containing 2A n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9H7F3_ASTMX)

HSP 1 Score: 129 bits (324), Expect = 5.090e-31
Identity = 73/200 (36.50%), Postives = 113/200 (56.50%), Query Frame = 2
Query:    2 CPLMDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQGYTTIQ-EDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFADVDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASI 598
            CPL  V  +++ DNVW  +     P  ++ D++  K W PFFS +    P  G +++Q ED+ YR T +++  E++D + + L+  I  WR  R  T +N   ++ L + LP LE   + G  ++  EEHR  L   +    I GFPL   F+++  +++ V +TG+H    P V+FALAV    YP NVLS+WVYIAS+
Sbjct: 1278 CPLQTVGCLVNADNVWFNIQLYATPIRMSFDVTKPKFWKPFFSRSF---PDPGLSSVQPEDLVYRRTDKAYAAELQDRIEKILREKIMEWRP-RHPTRWNRYCTSTLRQFLPKLE---MSGGREVA-EEHRLELQSLLGDYRISGFPLHLPFSEIRPIIEAVYSTGVHNVEAPNVEFALAVYVHPYPSNVLSVWVYIASL 1469          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5168.12443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN2_ECTSI1.100e-6962.69CC2D2AN-C2 domain-containing protein n=1 Tax=Ectoc... [more]
A0A836CHA3_9STRA4.370e-6153.96C2 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S3HJT6_9STRA7.690e-3936.49Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S4VR85_9STRA2.270e-3637.13Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
UPI001F048C623.080e-3233.99LOW QUALITY PROTEIN: coiled-coil and C2 domain-con... [more]
A0A6J0USJ3_9SAUR1.090e-3136.50coiled-coil and C2 domain-containing protein 2A is... [more]
A0A6P8R442_GEOSA2.030e-3135.50coiled-coil and C2 domain-containing protein 2A is... [more]
A0A5N5LVF1_PANHP3.780e-3137.50C2 domain-containing protein n=2 Tax=Pangasianodon... [more]
A0A2D4INJ6_MICLE4.340e-3134.00Uncharacterized protein (Fragment) n=2 Tax=Micruru... [more]
A0A8B9H7F3_ASTMX5.090e-3136.50Coiled-coil and C2 domain containing 2A n=1 Tax=As... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5168contigH-elongata_contig5168:5710..7697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.4
Seed ortholog evalue9.1e-59
Seed eggNOG ortholog2880.D7FPN2
Preferred nameCC2D2A
KEGG koko:K16457,ko:K19352
GOsGO:0000226,GO:0001578,GO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0014020,GO:0016043,GO:0016331,GO:0021915,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035082,GO:0035148,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0036477,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0044085,GO:0044292,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048568,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0097447,GO:0097458,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515,GO:1990403
EggNOG free text desc.protein localization to ciliary transition zone
EggNOG OGsKOG3639@1,KOG3639@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size610
Cds size600
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5168.12443.1prot_H-elongata_contig5168.12443.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5168 5720..7697 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.8954854-UTR-H-elongata_contig5168:5709..57191622930845.8954854-UTR-H-elongata_contig5168:5709..5719Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5168 5710..5719 +
1691679595.3215744-UTR-H-elongata_contig5168:5709..57191691679595.3215744-UTR-H-elongata_contig5168:5709..5719Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5168 5710..5719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.9114602-CDS-H-elongata_contig5168:5719..58231622930845.9114602-CDS-H-elongata_contig5168:5719..5823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5168 5720..5823 +
1691679595.3413744-CDS-H-elongata_contig5168:5719..58231691679595.3413744-CDS-H-elongata_contig5168:5719..5823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5168 5720..5823 +
1622930845.9256802-CDS-H-elongata_contig5168:6398..65451622930845.9256802-CDS-H-elongata_contig5168:6398..6545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5168 6399..6545 +
1691679595.352499-CDS-H-elongata_contig5168:6398..65451691679595.352499-CDS-H-elongata_contig5168:6398..6545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5168 6399..6545 +
1622930845.9409873-CDS-H-elongata_contig5168:6709..68061622930845.9409873-CDS-H-elongata_contig5168:6709..6806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5168 6710..6806 +
1691679595.3642385-CDS-H-elongata_contig5168:6709..68061691679595.3642385-CDS-H-elongata_contig5168:6709..6806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5168 6710..6806 +
1622930845.9576106-CDS-H-elongata_contig5168:6994..70671622930845.9576106-CDS-H-elongata_contig5168:6994..7067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5168 6995..7067 +
1691679595.3752675-CDS-H-elongata_contig5168:6994..70671691679595.3752675-CDS-H-elongata_contig5168:6994..7067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5168 6995..7067 +
1622930845.974528-CDS-H-elongata_contig5168:7518..76971622930845.974528-CDS-H-elongata_contig5168:7518..7697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5168 7519..7697 +
1691679595.3844047-CDS-H-elongata_contig5168:7518..76971691679595.3844047-CDS-H-elongata_contig5168:7518..7697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5168 7519..7697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5168.12443.1

>prot_H-elongata_contig5168.12443.1 ID=prot_H-elongata_contig5168.12443.1|Name=mRNA_H-elongata_contig5168.12443.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
MDVASVISQDNVWACLHRNVRPCDLNLDLSDGKTWTPFFSSAVNPAPSQG
YTTIQEDIKYRPTQQSFVYEVEDLVREALKRDIRRWRSKRSHTAFNADVS
NRLAELLPLLEKQSLHGETKMGNEEHRRRLGKTMRSRDIVGFPLQSGFAD
VDQVVQMVKATGIHEARHPEVQFALAVQGFAYPQNVLSIWVYIASITPR*
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mRNA from alignment at H-elongata_contig5168:5710..7697+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5168.12443.1 ID=mRNA_H-elongata_contig5168.12443.1|Name=mRNA_H-elongata_contig5168.12443.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1988bp|location=Sequence derived from alignment at H-elongata_contig5168:5710..7697+ (Himanthalia elongata Himel1 dioecious)
GTGCCCTCTCATGGACGTTGCATCTGTCATCAGCCAGGACAACGTTTGGG CTTGCCTTCACCGAAACGTTCGACCGTGCGATCTCAACCTCGACCTCAGC GACGGAAAAACGTGGTAAGGCATCACAGGACATTCGTTGTGGAGGAGGGA TCGTCTGATGATATCCTATAATCAACAGTTTGAGCATTTCTGGTGTCCCT AAGTAGCGATTAAGTTCGAAAACAAAATATCGGGCGATTACCCCTTTAAA ATTGTACCAGTAAGAGGTAATGTCGATCATGCATTGCGGGTGTGTCATCG TACAATCCAGGTCACTTACCGTACATGATATGCTGAGTTTCTCACCTGGA TTTTGACGTGCTAACTTAAGCACCAGATTTATCGCGGTACCTCGGATTTT CACCTTGTTTGGGATAACCTCAGCGTGGAGATTCATGACCACATATCTTT ACTCATGTCGAGAGAATCCGACGTCGGGATAAAACACCCAAGTGTTCCTA TTTCAATGCAGCACATATAGATATCAGGAGATGGATCAAATTAGTGCTCA AGAGAATCTCAGCGGCGCTTTGTTGGTCGCTTTCCCGACCCTGTGGGGAG CAGATCGTTTCAAAACCGTGTCAATCGCGTGAAGCAGTGTGATATTACGT CGATCGACGCCCCCCCCCCCCTCCAAACCAATGTCTCAGGACTCCTTTCT TCTCCAGCGCCGTGAACCCGGCGCCTTCTCAGGGCTACACCACCATTCAG GAAGATATTAAGTACCGCCCGACCCAGCAGTCTTTCGTGTACGAGGTAGA GGATTTAGTCCGGGAGGCTCTCAAACGGGATATCAGGTACTCGGCCCGCT TGTGTCACAGTTTTGTCAACTGTCGATGATCTGAACCACCCTCCTCTCCT GTATGAATACAAGATGCCGTTGCTACATCACGTTTGAAAAACTAGTTTTC ACCTCGTTGCCTCGCGGCTACATCACCAACGCGTTCTTTGATGGTAACAG GCGGTGGCGATCAAAGCGTTCCCACACGGCTTTTAATGCCGATGTCTCGA ATCGGCTCGCGGAGCTTCTTCCACTACTCGAGAAACAGAGCCTCCACGTG AGATGAGGCTAGAGAGACCCTTCACGCTAAGGTGTCTCGAGAGGGTAAAA CACTAGGCCCGCTTTCGTCTCTGCACGAGTCAGTCAGATGATTATGTTCC TTGGAAGGGGATAACGAGCCTAAAGTTAGACATCTGATGGCGGGGATCTC TATAATACTCCTTAACCTTTTTCCATGTGCGGCAGGGGGAAACAAAAATG GGGAATGAGGAGCATCGTCGCCGCCTCGGAAAAACCATGCGGAGCCGAGA TATCGTCGGTAAGGTGCCTGCCTCAGAATAATAGCACCGATAGAACACCT TTATAAAACAACACATGAACTCAATCAAACCCTCCGAACATCCACACTAT ATCGTATATACTTCATTACGCCACACATGGTAAAGTCAGGGAGACCAACT ATCTTCACGTTCGAGTGTGTACATTCCTATCTCTTATGAGCAAAAAATCT TCACAAGAAAGTAGTTCACATTACAGGTAGTGGTTATTATTCAATATTAA ATAGTTCATCAGCTATAGACACTAGACAGAATACTTGATCCAAGATCATT CGATTACAAGTTCCAAATCAGGGAACGAGATAGAGCCAGTCATACCAATT GTTGGGGGGAAATACCAAAGCCTGTGACATAGTCTATATAAGTCCTTCGA GTTTCTTGCGTTCGCGCATCTTCCACCTAAACCGCCTTCACTATAAAAAC GCCTCGCAGGTTTTCCGCTACAATCCGGGTTCGCAGACGTAGACCAGGTG GTACAGATGGTGAAGGCCACGGGTATCCACGAAGCCAGACATCCGGAAGT TCAGTTCGCCCTTGCCGTGCAGGGGTTCGCCTATCCGCAAAATGTGCTTT CTATCTGGGTGTATATCGCCTCCATCACACCTCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig5168:5710..7697+

>mRNA_H-elongata_contig5168.12443.1 ID=mRNA_H-elongata_contig5168.12443.1|Name=mRNA_H-elongata_contig5168.12443.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig5168:5710..7697+ (Himanthalia elongata Himel1 dioecious)
ATGGACGTTGCATCTGTCATCAGCCAGGACAACGTTTGGGCTTGCCTTCA
CCGAAACGTTCGACCGTGCGATCTCAACCTCGACCTCAGCGACGGAAAAA
CGTGATGGACGTTGCATCTGTCATCAGCCAGGACAACGTTTGGGCTTGCC
TTCACCGAAACGTTCGACCGTGCGATCTCAACCTCGACCTCAGCGACGGA
AAAACGTGGACTCCTTTCTTCTCCAGCGCCGTGAACCCGGCGCCTTCTCA
GGGCTACACCACCATTCAGGAAGATATTAAGTACCGCCCGACCCAGCAGT
CTTTCGTGTACGAGGTAGAGGATTTAGTCCGGGAGGCTCTCAAACGGGAT
ATCAGGACTCCTTTCTTCTCCAGCGCCGTGAACCCGGCGCCTTCTCAGGG
CTACACCACCATTCAGGAAGATATTAAGTACCGCCCGACCCAGCAGTCTT
TCGTGTACGAGGTAGAGGATTTAGTCCGGGAGGCTCTCAAACGGGATATC
AGGCGGTGGCGATCAAAGCGTTCCCACACGGCTTTTAATGCCGATGTCTC
GAATCGGCTCGCGGAGCTTCTTCCACTACTCGAGAAACAGAGCCTCCACG
CGGTGGCGATCAAAGCGTTCCCACACGGCTTTTAATGCCGATGTCTCGAA
TCGGCTCGCGGAGCTTCTTCCACTACTCGAGAAACAGAGCCTCCACGGGG
AAACAAAAATGGGGAATGAGGAGCATCGTCGCCGCCTCGGAAAAACCATG
CGGAGCCGAGATATCGTCGGGGGAAACAAAAATGGGGAATGAGGAGCATC
GTCGCCGCCTCGGAAAAACCATGCGGAGCCGAGATATCGTCGGTTTTCCG
CTACAATCCGGGTTCGCAGACGTAGACCAGGTGGTACAGATGGTGAAGGC
CACGGGTATCCACGAAGCCAGACATCCGGAAGTTCAGTTCGCCCTTGCCG
TGCAGGGGTTCGCCTATCCGCAAAATGTGCTTTCTATCTGGGTGTATATC
GCCTCCATCACACCTCGATGAGTTTTCCGCTACAATCCGGGTTCGCAGAC
GTAGACCAGGTGGTACAGATGGTGAAGGCCACGGGTATCCACGAAGCCAG
ACATCCGGAAGTTCAGTTCGCCCTTGCCGTGCAGGGGTTCGCCTATCCGC
AAAATGTGCTTTCTATCTGGGTGTATATCGCCTCCATCACACCTCGATGA
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