mRNA_H-elongata_contig51672.12441.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51672.12441.1
Unique NamemRNA_H-elongata_contig51672.12441.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A6H5JH71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH71_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 2.820e-64
Identity = 124/217 (57.14%), Postives = 138/217 (63.59%), Query Frame = 1 
Query:   28 QVTLPNKPPPQPDSSACWGYLRLALRPLDSRLLNNALRTPENEGKLPGTKPFLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENP-VPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRG-------SDAPEEPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDMARGRSGNAAGYVR 654
            QV+LP KPPPQPD S  W YLRLALRPLDS  L + L TPE      G +PFLANPLSPHVVM+T  NA DTLCC+KPTRDG QVAAGFTDR+VRAWRTAP+AP+P  ADE   VPA                                                 + +R VGHS+PVY VSWSPDGRFLLSAGGDGGVRLWD+ARGR G++AGYVR
Sbjct:  245 QVSLPLKPPPQPDPSENWPYLRLALRPLDSAQLKDTLSTPEG-----GARPFLANPLSPHVVMVTFFNAVDTLCCLKPTRDGMQVAAGFTDRMVRAWRTAPNAPHPPTADETAAVPARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLSDTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARGRVGSSAGYVR 456
[Close]
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 5.060e-43
Identity = 138/257 (53.70%), Postives = 151/257 (58.75%), Query Frame = 1 
Query:   31 VTLPNKPPPQPDSSACWGYLRLALRPLDSRLLNNALRTPENEGKLPGTKPFLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPE----EPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDMARGRSGNAAGYVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDHPQPLRMFAG 789
            V+LP KPPPQPD    W YLRLALRPLDS  L + L TPE      G +PFLANPLSPHVVM+T  NA DTLCC+KPTRDG                                                          M R+GA           +    + +R VGHS+PVY VSWSPDGRFLLSAGGDGGVRLWD+ARGR G +AG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTD   PLR+FAG
Sbjct:  326 VSLPLKPPPQPDPPENWPYLRLALRPLDSAQLKDTLSTPEG-----GARPFLANPLSPHVVMVTFYNAVDTLCCLKPTRDG----------------------------------------------------------MQRNGAAXXXXXXXXXQDSGLADTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARGRVGGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDCASPLRIFAG 519
[Close]
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A835YMV1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.020e-17
Identity = 76/264 (28.79%), Postives = 100/264 (37.88%), Query Frame = 1 
Query:   64 DSSACWGYLR-LALRPLDSRLLNNALRTPENEGKLPG-TKPFLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPEEPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDMA--------RGRSGN----AAGYVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDHPQPLRMFAGHLKGVICV 813
            DS     YLR + L+PLD R    +      +   P      LA+ L P V+M T IN   +L CV    D  +VAAGF D   R +R+ P                                                G  GS +   P+R VGH++P+Y++SW+PD RFLL+ GGDG VRLWD+         R   G+    A   +                                 STD PQPLR+F GH+  V  V
Sbjct:  320 DSEWYAEYLRNVVLQPLDPRAAVASAAEALRKAAAPSDADAALADALEPTVLMTTLINTGASLVCVDTAPDAARVAAGFEDCSARVYRSGPQ----------------------------------------------QGAEGSGSEPPPVRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDLGWSSGSYGERSEEGSGDSPAKCLMAYKGHKCAIWGVDFSPLGYYFASGGADRTARLWSTDRPQPLRLFVGHMGDVTAV 537
[Close]
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A4T0X3H0_9ASCO (LisH domain-containing protein n=1 Tax=[Candida] inconspicua TaxID=52247 RepID=A0A4T0X3H0_9ASCO)

HSP 1 Score: 65.5 bits (158), Expect = 4.560e-8
Identity = 47/148 (31.76%), Postives = 67/148 (45.27%), Query Frame = 1 
Query:  169 GTKPFLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPEEPMR-FVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLW 609
            G K F++ P  P V M T  N  + L  ++   D T +A GF D  ++ W          + D +P+            +S+ K +  +S             K  SD P    R  VGHS PVY +S+SPDG++LLS+  D  VRLW
Sbjct:  421 GHKVFISQPALPSVCMYTFHNTNNDLTSLEFHPDSTMIAGGFQDSFIKLW----------SIDGSPL------------KSIIKSDPYNS-------------KVDSDLPTNTSRKLVGHSGPVYGLSFSPDGKYLLSSSADSTVRLW 533
[Close]
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: G8BGA3_CANPC (LisH domain-containing protein n=3 Tax=Candida TaxID=1535326 RepID=G8BGA3_CANPC)

HSP 1 Score: 63.2 bits (152), Expect = 2.510e-7
Identity = 41/139 (29.50%), Postives = 58/139 (41.73%), Query Frame = 1 
Query:  199 SPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPEEPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDM 615
            +P V M T  N  + + CV    D T VAAGF    VR W          + D  P+            ES  KK+                 ++    PE   + +GHS P+Y +S+SPD +FLL+   D  +RLW +
Sbjct:  432 APSVCMYTFHNTNNEMTCVAFNEDSTLVAAGFQGSYVRIW----------SLDGKPL------------ESSLKKD-----------------RKNHQLPENSRKLIGHSGPIYGISFSPDNKFLLTCSEDKTIRLWSL 531
[Close]
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A099P2A2_PICKU (LisH domain-containing protein n=4 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A099P2A2_PICKU)

HSP 1 Score: 62.8 bits (151), Expect = 3.510e-7
Identity = 47/150 (31.33%), Postives = 67/150 (44.67%), Query Frame = 1 
Query:  181 FLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVND----GKRGSDAPEEPMR-FVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDM 615
            +++ P  P V M T  N  + L  ++   D T +A GF D  ++ W          + D +P+             SV K +         RD  +ND    G   S  P    R  VGHS PVY +S+SPDG++LLS+  D  VRLW +
Sbjct:  480 YISQPSLPSVCMYTFHNTNNDLTSLEYHPDSTMIAGGFQDSFIKLW----------SIDGSPL------------RSVLKNDP------YNRDIDLNDDNDNGGANSGIPNILSRKLVGHSGPVYGLSFSPDGKYLLSSSADSTVRLWSL 601
[Close]
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A150GP73_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GP73_GONPE)

HSP 1 Score: 60.5 bits (145), Expect = 2.220e-6
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:  496 PEEPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDMARGR 627
            P  P   VGH  PV AV+WSPDGR +  AGGDG VRLW+ A GR
Sbjct: 1121 PLGPPPLVGHMGPVNAVAWSPDGRLIAGAGGDGTVRLWEAATGR 1164
[Close]
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A0E9NFN2_SAICN (LisH domain-containing protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NFN2_SAICN)

HSP 1 Score: 59.7 bits (143), Expect = 3.170e-6
Identity = 46/141 (32.62%), Postives = 59/141 (41.84%), Query Frame = 1 
Query:  202 PHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPEEPM---RFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDM 615
            P V + T  N  D L CV  + D + VA GF +  VR W                           +GE    K +G+ A            K G   PE+ +   R +GHS PVY VS+SPD ++LLS   D  VRLW M
Sbjct:  317 PSVCIYTFHNTYDGLNCVDFSEDASLVAGGFGESYVRVWSL-------------------------KGE----KLVGAQA------------KYGGQHPEDGLSTRRMIGHSGPVYGVSFSPDSKYLLSCSEDKSVRLWSM 416
[Close]
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A7S4JJI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JJI4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.680e-6
Identity = 42/127 (33.07%), Postives = 49/127 (38.58%), Query Frame = 1 
Query:  268 DGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPEEPMR--------FVGHSR--PVYAVSWSPDGRFLLSAGGDGGVRLWDMA 618
            DG +VAAG  D  VR W                                    +GS  S   R  +   GK   D    P R         +GH    PV+ V+W+ DGR LLSAGGDG VRLWD A
Sbjct:  563 DGRRVAAGCDDAAVRIWT-----------------------------------LGSGGSGSHRSSSFRSGKASVDTAASPARPAEESAQVLLGHKNGFPVFDVNWNRDGRTLLSAGGDGSVRLWDTA 654
[Close]
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Match: A0A1E3NEA8_9ASCO (LisH domain-containing protein n=2 Tax=Pichia membranifaciens TaxID=4926 RepID=A0A1E3NEA8_9ASCO)

HSP 1 Score: 58.9 bits (141), Expect = 6.330e-6
Identity = 51/169 (30.18%), Postives = 73/169 (43.20%), Query Frame = 1 
Query:  109 LDSRLLNNALRTPENEGKLPGTKPFLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTDRVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAMVRDGAVNDGKRGSDAPEEPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGVRLWDM 615
            L+S   NNA     N G   G   +++ P  P V M T  N  + L  +    D T +A GF D  V+ W          + D +P+             SV K +  +    +  D   N G   + +     + VGHS PVY +S+SPDG +LLS+  D  VRLW +
Sbjct:  465 LNSTSANNA-----NGG---GRTTYISQPSLPSVCMYTFHNTNNDLTNLAFHPDSTMIAGGFQDSFVKLW----------SIDGSPL------------RSVLKNDPYN----IEVDNESNQGLPTNTS----RKLVGHSGPVYGLSFSPDGHYLLSSSADSTVRLWAL 595
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51672.12441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH71_9PHAE2.820e-6457.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXT3_ECTSI5.060e-4353.70TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A835YMV1_9STRA2.020e-1728.79WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A4T0X3H0_9ASCO4.560e-831.76LisH domain-containing protein n=1 Tax=[Candida] i... [more]
G8BGA3_CANPC2.510e-729.50LisH domain-containing protein n=3 Tax=Candida Tax... [more]
A0A099P2A2_PICKU3.510e-731.33LisH domain-containing protein n=4 Tax=Pichia kudr... [more]
A0A150GP73_GONPE2.220e-661.36Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A0E9NFN2_SAICN3.170e-632.62LisH domain-containing protein n=2 Tax=Saitoella c... [more]
A0A7S4JJI4_9STRA5.680e-633.07Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A1E3NEA8_9ASCO6.330e-630.18LisH domain-containing protein n=2 Tax=Pichia memb... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51672contigH-elongata_contig51672:679..3713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue7.5e-39
Seed eggNOG ortholog2880.D7FXT3
KEGG koko:K03130
KEGG Pathwayko03022,ko05168,map03022,map05168
GOsGO:0000003,GO:0000280,GO:0000428,GO:0001673,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044798,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0051321,GO:0051704,GO:0055029,GO:0060255,GO:0061695,GO:0061982,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090575,GO:0097659,GO:0140013,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc.transcription initiation from RNA polymerase II promoter
EggNOG OGsCOG2319@1,KOG0263@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size960
Cds size960
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51672.12441.1prot_H-elongata_contig51672.12441.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51672 679..3713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.5028896-CDS-H-elongata_contig51672:678..8521622930845.5028896-CDS-H-elongata_contig51672:678..852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51672 679..852 +
1691679595.1337326-CDS-H-elongata_contig51672:678..8521691679595.1337326-CDS-H-elongata_contig51672:678..852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51672 679..852 +
1622930845.5182457-CDS-H-elongata_contig51672:1154..12591622930845.5182457-CDS-H-elongata_contig51672:1154..1259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51672 1155..1259 +
1691679595.1446218-CDS-H-elongata_contig51672:1154..12591691679595.1446218-CDS-H-elongata_contig51672:1154..1259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51672 1155..1259 +
1622930845.5313497-CDS-H-elongata_contig51672:1597..19861622930845.5313497-CDS-H-elongata_contig51672:1597..1986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51672 1598..1986 +
1691679595.15363-CDS-H-elongata_contig51672:1597..19861691679595.15363-CDS-H-elongata_contig51672:1597..1986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51672 1598..1986 +
1622930845.5475812-CDS-H-elongata_contig51672:2381..25281622930845.5475812-CDS-H-elongata_contig51672:2381..2528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51672 2382..2528 +
1691679595.163202-CDS-H-elongata_contig51672:2381..25281691679595.163202-CDS-H-elongata_contig51672:2381..2528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51672 2382..2528 +
1622930845.5640304-CDS-H-elongata_contig51672:3568..37131622930845.5640304-CDS-H-elongata_contig51672:3568..3713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51672 3569..3713 +
1691679595.1776736-CDS-H-elongata_contig51672:3568..37131691679595.1776736-CDS-H-elongata_contig51672:3568..3713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51672 3569..3713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51672.12441.1

>prot_H-elongata_contig51672.12441.1 ID=prot_H-elongata_contig51672.12441.1|Name=mRNA_H-elongata_contig51672.12441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=320bp
MHIFGRDLAQVTLPNKPPPQPDSSACWGYLRLALRPLDSRLLNNALRTPE
NEGKLPGTKPFLANPLSPHVVMLTCINAQDTLCCVKPTRDGTQVAAGFTD
RVVRAWRTAPDAPNPQAADENPVPASCDPPGAPRGESVAKKEMGSSASAM
VRDGAVNDGKRGSDAPEEPMRFVGHSRPVYAVSWSPDGRFLLSAGGDGGV
RLWDMARGRSGNAAGYVRYNGHRGPAWDVSFGPMGYYFATASADGTACMW
STDHPQPLRMFAGHLKGVICVVFHPNGNYVVTGSADKTVRVWDVQTGNCV
RLLVGHACCVNCVAVSPDGR
back to top

mRNA from alignment at H-elongata_contig51672:679..3713+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51672.12441.1 ID=mRNA_H-elongata_contig51672.12441.1|Name=mRNA_H-elongata_contig51672.12441.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3035bp|location=Sequence derived from alignment at H-elongata_contig51672:679..3713+ (Himanthalia elongata Himel1 dioecious)
ATGCACATTTTTGGCCGCGACCTCGCGCAGGTGACCCTCCCCAACAAGCC
CCCGCCACAGCCGGACTCGTCCGCTTGTTGGGGTTACCTGAGGCTCGCGC
TTCGCCCGCTAGACTCAAGGCTACTCAACAACGCACTTCGCACTCCGGAA
AACGAAGGCAAGCTGCCAGGTACTGTGAGTCTTGTTGAATCCCCCCCCCT
CCCGTCGCAAACCGTTACGTTTGTCTCATCCGATGGAAAATCTAAAACAG
CCCCTCCCCCCTTACCCCGCTACCCCTTGCAGAATTTTATCCGGCAAAAC
CGCTGCCGCCCTTTAAAAAAGCGTGTTTTACTTGTTTTTTCTTACTTACT
ATCCGTTCGCCGATCAACTGTAGGCTGTCCGAACGCTCCCCCTGCCCCCC
ATCCACTAGCCATATTTTCTTATTTTGTTCCTTCGCCGTGGCGTGACTAT
CGTGACTATCGCCTCCAGGAGGCGAGAAGCCCTTCCTGGCGAACCCCTTA
TCTCCCCACGTGGTCATGCTCACCTGTATCAATGCCCAAGATACGCTATG
TTGCGTAAAGCCCACCCGAGACGGCACGCAGGTTCGTTCCATCTTACGTC
GTTGCCTCCCTAGACACACTCCACGCCTTGCGTGGTTTTATACCGCTAAG
GAGGCGAGAAAAAAAATGTCATATATCTCTCTCTCTCTTATGGCTGTGGT
AGTGTACGCGTACTGTGTCACGCGCTTTTGTGTGAGTTTTTCCCGCGAGC
GTTGTTGTACACATCACGCTCCTGGGGGTACAAGTAATTGTCTTCGGTTA
GTCGGCCGGCAGGTCGATCGATGACGCAACTGCATCCCGCTCGTTTTACT
CCAGCCAAATAGCCACTGCTGTTTCTTCAAAATCGGCCCGTTCGCGTGCT
GCTCGTCCGCCTGAGCCAGGTGGCCGCCGGATTTACGGATCGCGTCGTCC
GCGCGTGGCGCACCGCGCCAGACGCCCCGAACCCCCAGGCGGCGGACGAA
AACCCCGTTCCCGCTTCTTGCGATCCTCCGGGCGCTCCGCGGGGGGAAAG
TGTCGCCAAGAAGGAAATGGGCAGCAGCGCCTCCGCGATGGTAAGGGATG
GCGCGGTAAATGACGGAAAAAGAGGCTCTGACGCACCTGAAGAGCCGATG
AGGTTCGTGGGGCACTCGCGACCAGTGTACGCGGTTTCGTGGTCTCCCGA
CGGGCGTTTTTTGCTGTCTGCCGGGGGCGACGGGGGCGTGAGGCTATGGG
ATATGGCAAGAGGGAGATCGGGGAACGCCGCGGGTTACGTGCGGTACAAT
GGGCACCGGTGAGTCGTGAGTTGATAGCTCGGGGGGGGTACCGATATCTT
GGATGGCTTCGGGGTCTTTTGACCGTTGCCATTTAATAGATAGCCTTCGC
CGACTGAGCAAAAAGCGACGCTGGAACCAGTGAGGTGAAATATGCCGCCT
TCTGTCTATAGTGTGTCGCGTCATCGTCCCTTGGTCACTCGTGTCTCGCC
ATACGCATGAGAGGGAGGTCGGCGAGGTAGATGTCGGGGCACCCCCCCAC
ACACACTCGAAAGTGTTGCTTCGAACGCTAGCTTTAGACATATTTTGGTA
TCTGTGAATAGAAACGCCGATCTCTCTCTTCAAAAGCCATAAAACGTCGA
CGCGCTCGCACCCGTCATGTTTGTCTTTTGCCGGGGACCAAAAATTCTCG
AAGCGGTCCCGCGTGGGATGTGTCCTTCGGCCCGATGGGGTACTACTTTG
CAACGGCGTCGGCGGACGGAACCGCGTGCATGTGGAGCACGGACCACCCG
CAGCCCCTTAGGATGTTCGCCGGGCATTTGAAGGGGGTCATCTGTGTCGT
GTGAGAGTGTGTATTTGTGTCCATGATTCGTGTACGTGTGGGTGTGGGTC
CATTATTTGTGTATGTGTGTATTTATTAAATACATTGCACATAACCGCGC
AATCCGGACCCTGTCATGCTATTAATAGTCATTCTAGACTACAAGCATTG
ACCCCACAATGGAGGATCATTTGCTACAAAAATATCTGATCAGACGTGAC
AACGGAGGCATACTCTCTCTACAGTTCGTATATAAGCCCTCAACGCCTTG
CGCTTCTCTTTCTAATTCCTTGTTTGCTTTTTGTATGTGTGTTTATTAAA
TTGCACATAACCTCACAATCCGGCTATCATCCTCTTTATTCTAGGCTGCT
CGCATTGATCCTCTAATGATCGTTGTTACGAAAGCCTCTGATTAGACTTG
ACAAAAGGCACATCCTCTTTACAATTCATATATAAGCCCTCAGCGCCTTG
CGCTTCCCGTTCTGCTTCCAGATGTTTGAGTTTTTACGTATCTTTCATCT
GTCGTTCTTTCAGCGTTTCCTCGTCTTTTCTATCTCTCTTGTCGGTATTG
GATAAGGCGCGAGGCTGGTTCTTGCCTATTTTTTTGTTCACGGCGCAATT
TGCCAGGTGTACACTTCAGTGCATTCTACACGTTGAATAATGTGCCCTTT
ATAACCTACTTCGGTATCAATACCATGTGCCAGTATTATGATGAATAATT
ACATATGATAATTTTGTCCTTAAATATAGGTGAAATGTCCACATTCGAAC
CTGACGATAGTTGGTCTCCTGGACTACATATTTCAGGGTGTTTTAAAATA
AAAATACCGTATGTCCGCTAGAGCCTCCCTAATAATAGAAATATAGTAAC
ACCAGTTGACCGTTTCAGCCTTCCTAGTAATAGCAACACCATATATCCTT
TATGACCTAGCGTAACTTGACAGAACCAATGCCCTCTTGTCTCCCCCTCT
GCGCGTTTTTGTTGAAACTCTCAACCCATTCGCGCCTCCCCCCCCCCCCT
CCTTCCCTCCCTGTTCCACCCCGGGAGGGGAGGGGTGTAGGTTCCACCCG
AACGGCAACTACGTGGTGACGGGAAGCGCGGACAAGACCGTTCGCGTGTG
GGACGTACAAACCGGAAACTGCGTCCGCCTCTTGGTGGGACACGCGTGCT
GCGTCAACTGTGTCGCGGTCTCACCCGATGGACGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51672:679..3713+

>mRNA_H-elongata_contig51672.12441.1 ID=mRNA_H-elongata_contig51672.12441.1|Name=mRNA_H-elongata_contig51672.12441.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1920bp|location=Sequence derived from alignment at H-elongata_contig51672:679..3713+ (Himanthalia elongata Himel1 dioecious)
ATGCACATTTTTGGCCGCGACCTCGCGCAGGTGACCCTCCCCAACAAGCC
CCCGCCACAGCCGGACTCGTCCGCTTGTTGGGGTTACCTGAGGCTCGCGC
TTCGCCCGCTAGACTCAAGGCTACTCAACAACGCACTTCGCACTCCGGAA
AACGAAGGCAAGCTGCCAGGTACTATGCACATTTTTGGCCGCGACCTCGC
GCAGGTGACCCTCCCCAACAAGCCCCCGCCACAGCCGGACTCGTCCGCTT
GTTGGGGTTACCTGAGGCTCGCGCTTCGCCCGCTAGACTCAAGGCTACTC
AACAACGCACTTCGCACTCCGGAAAACGAAGGCAAGCTGCCAGGTACTAA
GCCCTTCCTGGCGAACCCCTTATCTCCCCACGTGGTCATGCTCACCTGTA
TCAATGCCCAAGATACGCTATGTTGCGTAAAGCCCACCCGAGACGGCACG
CAGAAGCCCTTCCTGGCGAACCCCTTATCTCCCCACGTGGTCATGCTCAC
CTGTATCAATGCCCAAGATACGCTATGTTGCGTAAAGCCCACCCGAGACG
GCACGCAGGTGGCCGCCGGATTTACGGATCGCGTCGTCCGCGCGTGGCGC
ACCGCGCCAGACGCCCCGAACCCCCAGGCGGCGGACGAAAACCCCGTTCC
CGCTTCTTGCGATCCTCCGGGCGCTCCGCGGGGGGAAAGTGTCGCCAAGA
AGGAAATGGGCAGCAGCGCCTCCGCGATGGTAAGGGATGGCGCGGTAAAT
GACGGAAAAAGAGGCTCTGACGCACCTGAAGAGCCGATGAGGTTCGTGGG
GCACTCGCGACCAGTGTACGCGGTTTCGTGGTCTCCCGACGGGCGTTTTT
TGCTGTCTGCCGGGGGCGACGGGGGCGTGAGGCTATGGGATATGGCAAGA
GGGAGATCGGGGAACGCCGCGGGTTACGTGCGGTACAATGGGCACCGGTG
GCCGCCGGATTTACGGATCGCGTCGTCCGCGCGTGGCGCACCGCGCCAGA
CGCCCCGAACCCCCAGGCGGCGGACGAAAACCCCGTTCCCGCTTCTTGCG
ATCCTCCGGGCGCTCCGCGGGGGGAAAGTGTCGCCAAGAAGGAAATGGGC
AGCAGCGCCTCCGCGATGGTAAGGGATGGCGCGGTAAATGACGGAAAAAG
AGGCTCTGACGCACCTGAAGAGCCGATGAGGTTCGTGGGGCACTCGCGAC
CAGTGTACGCGGTTTCGTGGTCTCCCGACGGGCGTTTTTTGCTGTCTGCC
GGGGGCGACGGGGGCGTGAGGCTATGGGATATGGCAAGAGGGAGATCGGG
GAACGCCGCGGGTTACGTGCGGTACAATGGGCACCGCGGTCCCGCGTGGG
ATGTGTCCTTCGGCCCGATGGGGTACTACTTTGCAACGGCGTCGGCGGAC
GGAACCGCGTGCATGTGGAGCACGGACCACCCGCAGCCCCTTAGGATGTT
CGCCGGGCATTTGAAGGGGGTCATCTGTGTCGTCGGTCCCGCGTGGGATG
TGTCCTTCGGCCCGATGGGGTACTACTTTGCAACGGCGTCGGCGGACGGA
ACCGCGTGCATGTGGAGCACGGACCACCCGCAGCCCCTTAGGATGTTCGC
CGGGCATTTGAAGGGGGTCATCTGTGTCGTGTTCCACCCGAACGGCAACT
ACGTGGTGACGGGAAGCGCGGACAAGACCGTTCGCGTGTGGGACGTACAA
ACCGGAAACTGCGTCCGCCTCTTGGTGGGACACGCGTGCTGCGTCAACTG
TGTCGCGGTCTCACCCGATGGACGAGTTCCACCCGAACGGCAACTACGTG
GTGACGGGAAGCGCGGACAAGACCGTTCGCGTGTGGGACGTACAAACCGG
AAACTGCGTCCGCCTCTTGGTGGGACACGCGTGCTGCGTCAACTGTGTCG
CGGTCTCACCCGATGGACGA
back to top