mRNA_H-elongata_contig51602.12430.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51602.12430.1
Unique NamemRNA_H-elongata_contig51602.12430.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51602.12430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51602contigH-elongata_contig51602:666..1340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930844.3345113-CDS-H-elongata_contig51602:665..7501622930844.3345113-CDS-H-elongata_contig51602:665..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51602 666..750 +
1691679594.6038215-CDS-H-elongata_contig51602:665..7501691679594.6038215-CDS-H-elongata_contig51602:665..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51602 666..750 +
1622930844.3549728-CDS-H-elongata_contig51602:1061..13391622930844.3549728-CDS-H-elongata_contig51602:1061..1339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51602 1062..1339 +
1691679594.6137211-CDS-H-elongata_contig51602:1061..13391691679594.6137211-CDS-H-elongata_contig51602:1061..1339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51602 1062..1339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51602.12430.1prot_H-elongata_contig51602.12430.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51602 666..1339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51602.12430.1

>prot_H-elongata_contig51602.12430.1 ID=prot_H-elongata_contig51602.12430.1|Name=mRNA_H-elongata_contig51602.12430.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
SQVPPSKKRGSDGKSLSCVPSLPERPSRETTSSSCTGVDANANASINATC
DDREVPRPVTSRLSPTREGGRRDKSLKCSNPSARRLPPLSLSLPPPRAPA
SSPPLPLHPTKEALAYAISAA
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mRNA from alignment at H-elongata_contig51602:666..1340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51602.12430.1 ID=mRNA_H-elongata_contig51602.12430.1|Name=mRNA_H-elongata_contig51602.12430.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at H-elongata_contig51602:666..1340+ (Himanthalia elongata Himel1 dioecious)
TCGCAAGTCCCACCCTCAAAGAAGCGCGGTTCGGACGGCAAGTCGTTGAG
CTGCGTCCCAAGCCTACCCGAACGACCGTCTCGAGGTGAGATAAGGCGTC
TTTGGTCCTTCTCCCTCGTCATGAGGGGTATTTGGGGGAGGGGAGCATCG
CCAGAACAGTTTTTGCTCACACTGAAAGCCAATATTTCATCGCAAGAGGT
ACGGTAGAGTGAGTTCATCGTGCGGTCGACGGGTAGAATTTTGTTCTTGC
CCCCCCCACCCCATGTCAACCTGTCTCTCTTGGCAAGATCGACCACGATG
CGCGGCTGCTGCTGCTGCTACTGGCGGTATCTTGGAATGCCCACCCTATC
CCGATATCCCCTCCCCGCTCTCTCTCTATCTCCCTCTCTCCCGCAGAAAC
TACCTCCTCCTCTTGTACGGGTGTAGATGCTAATGCAAACGCAAGTATCA
ACGCGACGTGTGACGACCGCGAGGTTCCCCGACCGGTGACGTCAAGGCTC
TCTCCCACGCGGGAAGGGGGGCGGCGAGACAAGAGCTTGAAATGTTCCAA
CCCGAGCGCACGGCGGCTGCCGCCTCTGTCTCTGTCTCTGCCACCTCCCC
GCGCACCAGCCTCTTCCCCGCCGCTGCCTCTTCATCCGACGAAGGAAGCC
CTGGCCTACGCCATCTCTGCCGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig51602:666..1340+

>mRNA_H-elongata_contig51602.12430.1 ID=mRNA_H-elongata_contig51602.12430.1|Name=mRNA_H-elongata_contig51602.12430.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig51602:666..1340+ (Himanthalia elongata Himel1 dioecious)
TCGCAAGTCCCACCCTCAAAGAAGCGCGGTTCGGACGGCAAGTCGTTGAG
CTGCGTCCCAAGCCTACCCGAACGACCGTCTCGAGTCGCAAGTCCCACCC
TCAAAGAAGCGCGGTTCGGACGGCAAGTCGTTGAGCTGCGTCCCAAGCCT
ACCCGAACGACCGTCTCGAGAAACTACCTCCTCCTCTTGTACGGGTGTAG
ATGCTAATGCAAACGCAAGTATCAACGCGACGTGTGACGACCGCGAGGTT
CCCCGACCGGTGACGTCAAGGCTCTCTCCCACGCGGGAAGGGGGGCGGCG
AGACAAGAGCTTGAAATGTTCCAACCCGAGCGCACGGCGGCTGCCGCCTC
TGTCTCTGTCTCTGCCACCTCCCCGCGCACCAGCCTCTTCCCCGCCGCTG
CCTCTTCATCCGACGAAGGAAGCCCTGGCCTACGCCATCTCTGCCGCGAA
ACTACCTCCTCCTCTTGTACGGGTGTAGATGCTAATGCAAACGCAAGTAT
CAACGCGACGTGTGACGACCGCGAGGTTCCCCGACCGGTGACGTCAAGGC
TCTCTCCCACGCGGGAAGGGGGGCGGCGAGACAAGAGCTTGAAATGTTCC
AACCCGAGCGCACGGCGGCTGCCGCCTCTGTCTCTGTCTCTGCCACCTCC
CCGCGCACCAGCCTCTTCCCCGCCGCTGCCTCTTCATCCGACGAAGGAAG
CCCTGGCCTACGCCATCTCTGCCGCG
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