mRNA_H-elongata_contig51599.12427.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51599.12427.1
Unique NamemRNA_H-elongata_contig51599.12427.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51599.12427.1 vs. uniprot
Match: A0A6H5KVR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR4_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 2.800e-67
Identity = 97/124 (78.23%), Postives = 108/124 (87.10%), Query Frame = 1
Query:    1 MEYWMRTPACKEAKLKHMSYIDDVTFSREQ---ETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSRKDLDQAEMEEFVKQWAKENHPHVVEWECDNNEGDRSIDWYHVHVFFRLDCEDR 363
            MEYW+RTP CK AK KH+ +IDDV +SREQ   ETVFTCPFTG +RDI+LERNMFPYDVPTDVEHWTLWSR+DL + EME FV+ WA ENHPH VEWECDNNEG+RSIDW+HVHVFFRL CEDR
Sbjct:  310 MEYWVRTPNCKAAKSKHIDFIDDVAYSREQFIEETVFTCPFTGARRDIVLERNMFPYDVPTDVEHWTLWSRRDLPKDEMEAFVQGWAAENHPHAVEWECDNNEGERSIDWFHVHVFFRLGCEDR 433          
BLAST of mRNA_H-elongata_contig51599.12427.1 vs. uniprot
Match: D8LK74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK74_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 6.900e-66
Identity = 96/124 (77.42%), Postives = 106/124 (85.48%), Query Frame = 1
Query:    1 MEYWMRTPACKEAKLKHMSYIDDVTFSREQ---ETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSRKDLDQAEMEEFVKQWAKENHPHVVEWECDNNEGDRSIDWYHVHVFFRLDCEDR 363
            M+YW+RTP CK AK KH+ +IDDV +SREQ   ETVFTCPFTG +R I+LERNMFPYDVPTDVEHWTLWSRKDL   EME FV+ WA ENHPH VEWECDNNEG+RSIDW+HVHVFFRL CEDR
Sbjct:  315 MDYWVRTPNCKAAKSKHIDFIDDVAYSREQFIEETVFTCPFTGARRAIVLERNMFPYDVPTDVEHWTLWSRKDLPNDEMEAFVQGWAAENHPHAVEWECDNNEGERSIDWFHVHVFFRLGCEDR 438          
BLAST of mRNA_H-elongata_contig51599.12427.1 vs. uniprot
Match: A0A836CLJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLJ2_9STRA)

HSP 1 Score: 139 bits (349), Expect = 7.910e-38
Identity = 63/120 (52.50%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    1 MEYWMRTPACKEAKLKHMSYIDDVTFSREQ---ETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSRKDLDQAEMEEFVKQWAKENHPHVVEWECDNNEGDRSIDWYHVHVFFRLD 351
            ME+W+R   CK  K +H+ +ID    SREQ   +TVFT P TG  RD +LE NMFPY  P DVEHWTLWSR D+   E++ +V +W   N PHV  W  D+N GDRSI W+HVHV+ + D
Sbjct:  133 MEFWVRGEECKRLKTEHLDFIDSHYSSREQFIEDTVFTDPMTGEVRDTVLEPNMFPYQTPPDVEHWTLWSRSDMTHEEIQAWVTEWLMVNKPHVRRWNYDDNAGDRSIYWFHVHVYIQYD 252          
BLAST of mRNA_H-elongata_contig51599.12427.1 vs. uniprot
Match: K3X7P6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7P6_GLOUD)

HSP 1 Score: 114 bits (286), Expect = 1.940e-30
Identity = 55/121 (45.45%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 MEYWMRTPACKEAKLKHMSYIDDVTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSRKDLDQAEMEEFVKQWAKENHPHVVEWECDNNEGDRSIDWYHVHVFFRLDCEDR 363
            ++YW R+  C E K  HM  ID+V+ SRE+  + T   T     I+LE NMFPY  P  +EHWTLWSR ++   E+E +V  W  EN PHV  W  D N   RSID +HVHV+F+++   R
Sbjct:    8 IDYWDRSEECLERKWDHMDMIDEVSPSREEHILST---TLRDEHIILEPNMFPYTTPDGIEHWTLWSRNEMGDQEVEAYVSSWITENAPHVKSWNFDENSS-RSIDLFHVHVYFQVEAGQR 124          
BLAST of mRNA_H-elongata_contig51599.12427.1 vs. uniprot
Match: A0A6A3KAU7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KAU7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.960e-30
Identity = 56/119 (47.06%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 MEYWMRTPACKEAKLKHMSYIDDVTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSRKDLDQAEMEEFVKQWAKENHPHVVEWECDNNEGDRSIDWYHVHVFFRLDCE 357
            ++YW RT  C E K  HM  +DD+  SRE+  + T   T    +  LE NMFPYD P  +EHWTLWSR ++D AE+EE+V  W +EN PHV  W  D N   RSID +HVHV+ +   +
Sbjct:   63 LQYWDRTDECLERKWAHMDMVDDLFESREELILAT---TLSHTETALEPNMFPYDTPDGIEHWTLWSRHEMDNAEIEEYVCDWLRENAPHVERWNYDENLS-RSIDIFHVHVYLQAPAQ 177          
BLAST of mRNA_H-elongata_contig51599.12427.1 vs. uniprot
Match: A0A6U1PGM4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PGM4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 9.920e-30
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 MEYWMRTPACKEAKLKHMSYIDDVTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSRKDLDQAEMEEFVKQWAKENHPHVVEWECDNNEGDRSIDWYHVHVFFRL 348
            +EYW RT  C   K  HM +ID    SRE    F      + RD +LE NMFPYD P D+ HWT+W R ++ + E+ ++V+ W K+ +P++VEW  D+N G+RSID YHVHV+FR+
Sbjct:   69 IEYWDRTDDCINKKWDHMDFIDANFDSREN---FILETALLNRDHMLEPNMFPYDTPEDILHWTMWCRWEMSEEELIKYVENWMKK-YPYIVEWNYDDNAGERSIDLYHVHVYFRV 180          
BLAST of mRNA_H-elongata_contig51599.12427.1 vs. uniprot
Match: A0A5D6YDG9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDG9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.140e-28
Identity = 55/116 (47.41%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 MEYWMRTPACKEAKLKHMSYIDDVTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSRKDLDQAEMEEFVKQWAKENHPHVVEWECDNNEGDRSIDWYHVHVFFRL 348
            +EYW R+  C E K  H+  IDD   SRE+  + T   T      LLE NMFPY  P  +EHWTLWSR +L   E+E  V  W  E  PHV+ W  D+N   RSID +HVHV+FR+
Sbjct:   17 IEYWSRSDECLERKWDHLDKIDDSGLSREEHILAT---TLKGSRTLLEPNMFPYSTPAGIEHWTLWSRDELSDEEVERCVGIWIAEKAPHVLSWNFDDNPA-RSIDLFHVHVYFRV 128          
BLAST of mRNA_H-elongata_contig51599.12427.1 vs. uniprot
Match: A0A3M6VCZ3_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCZ3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.210e-28
Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    1 MEYWMRTPACKEAKLKHMSYIDDVTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSRKDLDQAEMEEFVKQWAKENHPHVVEWECDNNEGDRSIDWYHVHVFFR 345
            +EYW RT  C E K  HM  +D +  SRE+  + T   T   ++ +LE NMFPYD P  + HWTLWSR +++  E+EEFV  W +EN P V  W  D N   RSID +HVHV+ +
Sbjct:    6 VEYWDRTDECLERKWAHMDMVDRMFNSREELILAT---TLHHKETVLEPNMFPYDTPKGISHWTLWSRHEMNHTEIEEFVCNWIRENAPQVERWNYDENLS-RSIDIFHVHVYLK 116          
BLAST of mRNA_H-elongata_contig51599.12427.1 vs. uniprot
Match: A0A2D4C5Q1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5Q1_PYTIN)

HSP 1 Score: 108 bits (270), Expect = 1.190e-27
Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 MEYWMRTPACKEAKLKHMSYIDDVTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSRKDLDQAEMEEFVKQWAKENHPHVVEWECDNNEGDRSIDWYHVHVFFRLD 351
            +EYW RT  CKE K  H+  I D  +   +E +F     G  R   LE NMFPYD P  +EHWTLW   +L+  +++++V+ W   N PHV+ W  D+N  +RSID +HVHV+F+++
Sbjct:   32 IEYWSRTDECKERKWDHLDDIAD-KYGSAEEHIFATTLNG--RTAFLEPNMFPYDTPAGIEHWTLWHVNELNHEQIKQYVENWIDANAPHVLRWNYDDNP-ERSIDIFHVHVYFQVE 144          
BLAST of mRNA_H-elongata_contig51599.12427.1 vs. uniprot
Match: H3GM77_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM77_PHYRM)

HSP 1 Score: 109 bits (272), Expect = 3.580e-27
Identity = 51/116 (43.97%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    1 MEYWMRTPACKEAKLKHMSYIDDVTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSRKDLDQAEMEEFVKQWAKENHPHVVEWECDNNEGDRSIDWYHVHVFFRL 348
            +EYW RT  CKE K  H+  I +  +   +E +F     G  R   LE NMFPYD P  +EHWTLW  KDL+  +++++V+ W   N PHV  W  D+N  +RSID +HVHV+F++
Sbjct:  103 VEYWSRTDECKERKWDHLDEIAE-NYGSAEEHIFATTLKG--RTAFLEPNMFPYDTPAGIEHWTLWHVKDLNHEQVKQYVENWIDANAPHVQRWNYDDNP-ERSIDIFHVHVYFQV 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51599.12427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR4_9PHAE2.800e-6778.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK74_ECTSI6.900e-6677.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLJ2_9STRA7.910e-3852.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3X7P6_GLOUD1.940e-3045.45Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6A3KAU7_9STRA1.960e-3047.06Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A6U1PGM4_9STRA9.920e-3046.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5D6YDG9_9STRA3.140e-2847.41Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A3M6VCZ3_9STRA5.210e-2846.09Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A2D4C5Q1_PYTIN1.190e-2742.74Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
H3GM77_PHYRM3.580e-2743.97Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51599contigH-elongata_contig51599:1211..1875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.6
Seed ortholog evalue3.1e-54
Seed eggNOG ortholog2880.D8LK74
EggNOG OGs2DZE1@1,2S6YE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930843.7248194-CDS-H-elongata_contig51599:1210..14831622930843.7248194-CDS-H-elongata_contig51599:1210..1483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51599 1211..1483 -
1691679594.2699275-CDS-H-elongata_contig51599:1210..14831691679594.2699275-CDS-H-elongata_contig51599:1210..1483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51599 1211..1483 -
1622930843.7415886-CDS-H-elongata_contig51599:1785..18751622930843.7415886-CDS-H-elongata_contig51599:1785..1875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51599 1786..1875 -
1691679594.281704-CDS-H-elongata_contig51599:1785..18751691679594.281704-CDS-H-elongata_contig51599:1785..1875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51599 1786..1875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51599.12427.1prot_H-elongata_contig51599.12427.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51599 1211..1875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51599.12427.1

>prot_H-elongata_contig51599.12427.1 ID=prot_H-elongata_contig51599.12427.1|Name=mRNA_H-elongata_contig51599.12427.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MEYWMRTPACKEAKLKHMSYIDDVTFSREQETVFTCPFTGVQRDILLERN
MFPYDVPTDVEHWTLWSRKDLDQAEMEEFVKQWAKENHPHVVEWECDNNE
GDRSIDWYHVHVFFRLDCEDR
back to top

mRNA from alignment at H-elongata_contig51599:1211..1875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51599.12427.1 ID=mRNA_H-elongata_contig51599.12427.1|Name=mRNA_H-elongata_contig51599.12427.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=665bp|location=Sequence derived from alignment at H-elongata_contig51599:1211..1875- (Himanthalia elongata Himel1 dioecious)
ATGGAATACTGGATGCGCACCCCAGCATGTAAGGAGGCCAAATTGAAGCA CATGAGTTACATTGACGACGTGACATTCTCCAGAGAACAGGTGGGTAGTG ATCGAGTCACAACGTTATTCCTTTGGTTTTATCGAATTTATGCTCGATGA GCTTGTTCTTTTCACGAGTTATTCGCCTCTGGGATTCCATCAATTTCTGC TGTGTTACCAGAACGCTAGAATTCGTTGTTGTTCTTGGTTATTCAAGATT TTAATCTCGTTTACTTAGCGTTTTCAGCATTTTCGATATAACTTAACGCA CCGTTATAACGCAAACAAACATATCCTGAAAAGATTCCGTCTAATTGTTT TCTTATCTGTCGCACGTTTTTTTCTCGCCGCAGTTAATCGAGGAGACGGT GTTTACCTGCCCCTTTACCGGTGTACAACGCGACATCTTGCTTGAGCGAA ATATGTTTCCCTACGACGTTCCCACCGACGTGGAGCACTGGACGCTTTGG AGCAGGAAAGATCTCGACCAGGCAGAGATGGAAGAGTTTGTTAAACAATG GGCGAAGGAAAACCACCCACATGTGGTAGAATGGGAATGCGACAATAATG AGGGCGATCGCTCGATCGACTGGTACCATGTTCATGTTTTCTTCCGGCTG GATTGCGAAGACAGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51599:1211..1875-

>mRNA_H-elongata_contig51599.12427.1 ID=mRNA_H-elongata_contig51599.12427.1|Name=mRNA_H-elongata_contig51599.12427.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig51599:1211..1875- (Himanthalia elongata Himel1 dioecious)
ATGGAATACTGGATGCGCACCCCAGCATGTAAGGAGGCCAAATTGAAGCA
CATGAGTTACATTGACGACGTGACATTCTCCAGAGAACAGATGGAATACT
GGATGCGCACCCCAGCATGTAAGGAGGCCAAATTGAAGCACATGAGTTAC
ATTGACGACGTGACATTCTCCAGAGAACAGGAGACGGTGTTTACCTGCCC
CTTTACCGGTGTACAACGCGACATCTTGCTTGAGCGAAATATGTTTCCCT
ACGACGTTCCCACCGACGTGGAGCACTGGACGCTTTGGAGCAGGAAAGAT
CTCGACCAGGCAGAGATGGAAGAGTTTGTTAAACAATGGGCGAAGGAAAA
CCACCCACATGTGGTAGAATGGGAATGCGACAATAATGAGGGCGATCGCT
CGATCGACTGGTACCATGTTCATGTTTTCTTCCGGCTGGATTGCGAAGAC
AGAGAGACGGTGTTTACCTGCCCCTTTACCGGTGTACAACGCGACATCTT
GCTTGAGCGAAATATGTTTCCCTACGACGTTCCCACCGACGTGGAGCACT
GGACGCTTTGGAGCAGGAAAGATCTCGACCAGGCAGAGATGGAAGAGTTT
GTTAAACAATGGGCGAAGGAAAACCACCCACATGTGGTAGAATGGGAATG
CGACAATAATGAGGGCGATCGCTCGATCGACTGGTACCATGTTCATGTTT
TCTTCCGGCTGGATTGCGAAGACAGA
back to top