mRNA_H-elongata_contig51598.12426.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51598.12426.1
Unique NamemRNA_H-elongata_contig51598.12426.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: D8LIC7_ECTSI (Intraflagellar transport protein 80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIC7_ECTSI)

HSP 1 Score: 403 bits (1036), Expect = 2.610e-133
Identity = 196/255 (76.86%), Postives = 223/255 (87.45%), Query Frame = 1
Query:    1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLC-LVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
            IWTYEGR VSNPRFQNLRA+YLS R ISLSEDA+AILDR SPK VRVCDV+TGRPLADGR  EV+H+CEVEEVFL+QF+KGL ERRLAFIDRNKELWLC +V     +   P K+KLHTQVESAAWNDK D+L AIAD RLITWYYPNAV+IDRD+L LASTS DAAEFGKSPR++SF+G+ +MVRRADGALLSAAVAPYPA LY+SV+ QRW EA+RLCRLV++ ELWACM CMAL G NL L+EEAL+A++EV
Sbjct:  390 IWTYEGRHVSNPRFQNLRADYLSGRAISLSEDAVAILDRSSPKCVRVCDVATGRPLADGRAAEVVHECEVEEVFLSQFSKGLSERRLAFIDRNKELWLCPVVSRSAGRSSVPAKHKLHTQVESAAWNDKGDILTAIADGRLITWYYPNAVAIDRDLLVLASTSRDAAEFGKSPRVVSFYGAKVMVRRADGALLSAAVAPYPAMLYASVQGQRWEEAVRLCRLVQSRELWACMGCMALNGKNLQLAEEALAAIQEV 644          
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: D8LRF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF2_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 1.650e-129
Identity = 189/255 (74.12%), Postives = 217/255 (85.10%), Query Frame = 1
Query:    1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLC-LVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
            IW YEGR VSNPRFQNLRA+YLS R ISLSEDA+AILDR SP+ VRVCDV+TGRPLAD R  EV+H+CEVEEVFL+QF+KGL ERRLAFIDRNK+LWLC +V     +   P K+KLHTQVESAAWN K D+L AIAD RLITWYYPNAV+IDRD+L LASTS DAAEF KSPR++SF+G+ +MVRRADGALLSAAVAPYPA LY+SVR QRW EA+RLCR  ++ ELWACM CMAL G NL L+EEAL+A++EV
Sbjct:   45 IWIYEGRHVSNPRFQNLRADYLSGRAISLSEDAVAILDRSSPRCVRVCDVATGRPLADERVAEVVHECEVEEVFLSQFSKGLSERRLAFIDRNKKLWLCPVVSSSAGRSSVPAKHKLHTQVESAAWNGKGDILTAIADGRLITWYYPNAVAIDRDLLVLASTSRDAAEFCKSPRVVSFYGAKVMVRRADGALLSAAVAPYPAMLYASVRGQRWEEAVRLCR--RSRELWACMGCMALNGKNLQLAEEALAAIQEV 297          
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: A0A835ZN10_9STRA (Intraflagellar transport protein 80 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZN10_9STRA)

HSP 1 Score: 284 bits (727), Expect = 1.750e-87
Identity = 140/254 (55.12%), Postives = 182/254 (71.65%), Query Frame = 1
Query:    1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLCLVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
            IW+Y+GRQ+S P+  NLR E LSRR ISLS D +A LDR   K+VR+CD  TGR LA+G    V+HDCEV E+ L+QFA GL ERRLA IDRN++LWL  +      G +  + KLHTQV+SA WND  D LVA+AD RL+TWY+P+A  +D+D++ LA ++ +A EFGKSP + +F   ++ VRRADGALL+A V PYPA L++      WGEA+RLCR V ++ LWA  A MALQ  NL ++EEAL+A+K V
Sbjct:  390 IWSYDGRQISAPKLPNLRPELLSRRTISLSADVLAALDRTDGKTVRLCDALTGRALAEGA---VVHDCEVLEIGLSQFAPGLSERRLALIDRNRDLWLYALGGGQGGGGSKGRNKLHTQVDSAEWNDVCDCLVALADGRLVTWYHPSAAYVDKDLMALACSTREAPEFGKSPTVRAFLNGSVTVRRADGALLTARVPPYPALLHACAARGAWGEALRLCRFVADEGLWAACAAMALQARNLDVAEEALAAIKAV 640          
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: A0A7S2G6X5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6X5_9STRA)

HSP 1 Score: 253 bits (647), Expect = 9.950e-76
Identity = 129/255 (50.59%), Postives = 175/255 (68.63%), Query Frame = 1
Query:    1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLC-LVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
            I+ YEGRQVSNPRF NL+ E+L+R  ++LS+D +AILDR   K+VR  DV+TG+ L+      V H  E+ ++ LNQ    L ERRLA IDRN++L+L  +V  P   G     YKL TQV+S AWND SD+L AIAD R+I WYYPN V +DRD+L   +   D +EFGK P++ +F+GS L VR+ADGAL++ +V+ Y + LY  +   RW E++RLCR VK+D+LW C+A M++Q   L  +E AL+AL EV
Sbjct:  396 IYNYEGRQVSNPRFNNLQPEFLNRHTVALSKDVVAILDRTDSKTVRCFDVATGKALSTN----VTHKTEIVQIALNQSDVPLSERRLALIDRNRDLYLTPVVPQP---GIFRGVYKLQTQVDSMAWNDSSDMLAAIADGRMICWYYPNVVFVDRDLLPSTTIEKDGSEFGKVPQVSTFYGSRLTVRKADGALVTTSVSCYASMLYRYIGESRWEESVRLCRFVKDDKLWGCLAVMSIQNRKLETAEIALAALTEV 643          
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: A0A7S2WFK5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFK5_9STRA)

HSP 1 Score: 245 bits (625), Expect = 1.730e-72
Identity = 126/254 (49.61%), Postives = 168/254 (66.14%), Query Frame = 1
Query:    1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLC-LVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKE 759
            ++TYEGRQVS PRF  LR E+L+R  +SLS D +AILDR   K++R  DV+ GR L +     + H  E+  + LNQ A+G+ ERRL  IDRN++L +  +V  P   G     YKL TQV+S AWND SD+L AIAD R ITWYYPN V +DRD+L   +   DA +FGK P++++F G+   VRRADGA+L+  VAP+   LY      RW EAIRLCR VK+++LW C+A M++Q   L  +E AL++L E
Sbjct:  403 VYTYEGRQVSTPRFNGLRGEFLNRHTVSLSNDCVAILDRSDSKTIRCFDVNNGRQLGN----PITHKVEIVHLALNQGAQGIQERRLTLIDRNRDLHITPVVPQP---GIFRGMYKLQTQVDSMAWNDTSDMLCAIADGRFITWYYPNVVFVDRDLLPGTAAEKDATDFGKVPQLVAFCGNRASVRRADGAVLTTNVAPHTPMLYRLAAANRWEEAIRLCRFVKDNKLWGCLAAMSIQNRQLDTAEVALASLNE 649          
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: A0A7R9UC56_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC56_9STRA)

HSP 1 Score: 221 bits (563), Expect = 8.610e-68
Identity = 118/271 (43.54%), Postives = 156/271 (57.56%), Query Frame = 1
Query:    1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLCLVQH-PTVKGKAPPK----------------YKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
            +  YEGRQ+SNP+FQ L+ + L+   I L+ D + ++D   PK +R  D  +GR  A   T    H   +E V L+QFA+GL  R +AFIDRN++LWLCLV    + +G+                    +KL TQV++ AW D SD L AIAD RLITWYYP A  + RD+L      +   E GK P I SF  S L VRRADGA+L+      P  LY  +  QRW EA+RLCR VK D +WA +A MA++   L  +E AL+A+ EV
Sbjct:    4 VMNYEGRQLSNPKFQGLQCDLLNSSTIGLAPDTVCVIDSSDPKVLRCFDALSGRLFAGSIT----HTAPIESVALSQFAQGLERRMIAFIDRNRDLWLCLVSGGASARGRGRRGEEGDEAANSTQNQDRCFKLQTQVDTMAWGDTSDTLCAIADGRLITWYYPMAAFVSRDLLPRTKKVVPCPEMGKHPTIASFQDSHLSVRRADGAVLNVGTVCGPPLLYEFIEEQRWEEAVRLCRFVKEDAMWAALAAMAIKDRQLETAETALAAIHEV 270          
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: A0A7S1C6H3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6H3_9STRA)

HSP 1 Score: 229 bits (583), Expect = 1.600e-66
Identity = 115/256 (44.92%), Postives = 167/256 (65.23%), Query Frame = 1
Query:    1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLCLV--QHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
            +++Y+GR +SNPRF  +R E+L+RR + LS D +AILD+   K++R  D +T R ++D     + H  ++ E+ ++Q+A G  ER++ FID N+++++  V  QH         + KL T V+S AWND SD LVA+AD +L+TW YPN V +D+D+L   +TS     FGK P+I +FFG+ + VRRADGALL+A V   P  LY  VR  RW EA+RLCR VK  +LWA +A MA+   +L  +E AL+A+ EV
Sbjct:  391 VYSYDGRVLSNPRFAGIRVEFLNRRTLGLSSDTVAILDKADGKTIRCFDAATARHISD-----ITHHMDIVEIAVSQYATGTAERKVVFIDSNRDMYITPVLRQH---------QVKLSTMVDSVAWNDVSDTLVALADGKLVTWTYPNVVFVDKDLLPATTTSKAGDMFGKLPQIHTFFGTRVTVRRADGALLTANVGVSPPLLYEFVRGSRWEEAVRLCRFVKAPDLWAALAAMAINEKHLHTAEIALAAINEV 632          
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: R7TDL0_CAPTE (Uncharacterized protein n=2 Tax=Capitella teleta TaxID=283909 RepID=R7TDL0_CAPTE)

HSP 1 Score: 227 bits (578), Expect = 1.010e-65
Identity = 107/253 (42.29%), Postives = 170/253 (67.19%), Query Frame = 1
Query:    1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLCLVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKE 759
            ++TYEGR V +P+F  +R + L+ + +SLS+D IAI D+   K + + ++STG+PL DG+    +H  EV EV+L+Q      ERRLA +D+N++L+L  V+   V GK     KL T + S  WND++++L A+++ +L+ W+YPNA S+D+D++   +   +  EFGKSP+++SF G  + VRRA+G++L+ +V+PYP+ L++ V   RW +A+RLCR VK + LWAC+A MA  G  L  +E A +A+ E
Sbjct:  397 VYTYEGRMVCSPKFPGMRTDILNEQTVSLSDDTIAIRDKTDEKVIHMFELSTGKPLGDGKP--YIHKIEVMEVYLDQCGTAT-ERRLAIVDKNRDLYLTQVR---VYGKDRKTVKLSTMINSLLWNDETNMLAALSEGKLLVWFYPNASSVDKDLISRTTYERETNEFGKSPQLLSFLGKQISVRRAEGSILTTSVSPYPSILHNCVTLGRWDDAVRLCRFVKEESLWACLAAMAAYGKQLGTAEVAYAAIDE 643          
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: UPI001EE5F7DE (intraflagellar transport protein 80 homolog n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE5F7DE)

HSP 1 Score: 225 bits (573), Expect = 6.380e-65
Identity = 113/253 (44.66%), Postives = 166/253 (65.61%), Query Frame = 1
Query:    1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLCLVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKE 759
            +++Y+GR V +PR Q ++A+ L+ + ISLS D +AI D+   K V V D  TG+ + DG+   V H  EV EV L+QF     ERRLA ID+N++L+L  V+   V G      KL T ++S AWND +++L A+ D  ++ WYYPNAV +DRD+L       DA+EFGK+P+++ F G+ L++RR++G+L+S  V+PYP  L+S   + RWG+++RLCR VK D LWAC+A MA     L  +E A +A+KE
Sbjct:  399 VYSYDGRLVCSPRHQGMKADILNTQTISLSNDTVAIRDKADEKVVYVFDAQTGKSMGDGKP--VTHKVEVMEVALDQFGPAT-ERRLAIIDKNRDLYLTSVR---VFGTDRKSVKLGTMIQSLAWNDDTNMLAAMTDGCVLVWYYPNAVFVDRDLLPKTLYRKDASEFGKAPQLIDFVGNHLILRRSEGSLISTTVSPYPGVLHSYANSSRWGDSLRLCRFVKEDTLWACLAAMASYAKELNTAEVAYAAIKE 645          
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Match: A0A851B3Y4_PICGY (IFT80 protein (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A851B3Y4_PICGY)

HSP 1 Score: 219 bits (559), Expect = 7.860e-65
Identity = 107/255 (41.96%), Postives = 170/255 (66.67%), Query Frame = 1
Query:    1 IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDVSTGRPLADGRTPEVLHDCEVEEVFLNQFAKGL-GERRLAFIDRNKELWLCLVQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVSIDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYPATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSALKEV 762
            +++YEGR +S+P++ ++RA+ L+ + +SLS D +A+ D+   K + + +  +G+PL DG+   + H  E+ E+ L+Q  KGL  ER++AFID+N++L++  V+     GK     K+ T V+S AWND S++L  I DSR   WYYPN V +D+D+L       DA+EFGK+P+I+SF G+ + VRRADG+L+   V+PYPA L+  V + RW + +RLCR VK+  LWAC+A MA+   ++  +E A +A+ E+
Sbjct:  184 LYSYEGRLISSPKYPSMRADILNAQTVSLSNDTLAVKDKADEKVIYIFEALSGKPLGDGKP--LTHKTEIVEIALDQ--KGLTSERKIAFIDKNRDLFITSVKR---FGKEQKIVKIGTMVQSLAWNDTSNILCGIQDSRFTVWYYPNTVYVDKDLLPKTLYEKDASEFGKTPQIVSFAGNGITVRRADGSLVHLHVSPYPAVLHDYVSSSRWEDGVRLCRFVKDQTLWACLAAMAVANKDMTTAEIAYAAIGEI 431          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51598.12426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIC7_ECTSI2.610e-13376.86Intraflagellar transport protein 80 n=2 Tax=Ectoca... [more]
D8LRF2_ECTSI1.650e-12974.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZN10_9STRA1.750e-8755.12Intraflagellar transport protein 80 n=1 Tax=Tribon... [more]
A0A7S2G6X5_9STRA9.950e-7650.59Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2WFK5_9STRA1.730e-7249.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9UC56_9STRA8.610e-6843.54Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1C6H3_9STRA1.600e-6644.92Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
R7TDL0_CAPTE1.010e-6542.29Uncharacterized protein n=2 Tax=Capitella teleta T... [more]
UPI001EE5F7DE6.380e-6544.66intraflagellar transport protein 80 homolog n=2 Ta... [more]
A0A851B3Y4_PICGY7.860e-6541.96IFT80 protein (Fragment) n=2 Tax=Passeriformes Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51598contigH-elongata_contig51598:335..2315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score405.2
Seed ortholog evalue2.2e-110
Seed eggNOG ortholog2880.D8LIC7
Preferred nameIFT80
KEGG koko:K19678
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006935,GO:0006996,GO:0007275,GO:0008150,GO:0009593,GO:0009605,GO:0009791,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010646,GO:0010648,GO:0015630,GO:0016043,GO:0017015,GO:0022607,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030512,GO:0030990,GO:0030992,GO:0032501,GO:0032502,GO:0032991,GO:0036064,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040017,GO:0040018,GO:0040024,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045927,GO:0048518,GO:0048519,GO:0048520,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051606,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090325,GO:0090326,GO:0097730,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903844,GO:1903845,GO:1905515
EggNOG free text desc.cilium assembly
EggNOG OGsCOG2319@1,KOG1524@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size762
Cds size762
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51598.12426.1prot_H-elongata_contig51598.12426.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51598 335..2315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930843.6158056-CDS-H-elongata_contig51598:334..4371622930843.6158056-CDS-H-elongata_contig51598:334..437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51598 335..437 -
1691679594.1843228-CDS-H-elongata_contig51598:334..4371691679594.1843228-CDS-H-elongata_contig51598:334..437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51598 335..437 -
1622930843.6324534-CDS-H-elongata_contig51598:856..10051622930843.6324534-CDS-H-elongata_contig51598:856..1005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51598 857..1005 -
1691679594.2048864-CDS-H-elongata_contig51598:856..10051691679594.2048864-CDS-H-elongata_contig51598:856..1005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51598 857..1005 -
1622930843.6445343-CDS-H-elongata_contig51598:1229..13821622930843.6445343-CDS-H-elongata_contig51598:1229..1382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51598 1230..1382 -
1691679594.2254653-CDS-H-elongata_contig51598:1229..13821691679594.2254653-CDS-H-elongata_contig51598:1229..1382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51598 1230..1382 -
1622930843.6607485-CDS-H-elongata_contig51598:1762..19091622930843.6607485-CDS-H-elongata_contig51598:1762..1909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51598 1763..1909 -
1691679594.2368214-CDS-H-elongata_contig51598:1762..19091691679594.2368214-CDS-H-elongata_contig51598:1762..1909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51598 1763..1909 -
1622930843.6789026-CDS-H-elongata_contig51598:2105..23151622930843.6789026-CDS-H-elongata_contig51598:2105..2315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51598 2106..2315 -
1691679594.248978-CDS-H-elongata_contig51598:2105..23151691679594.248978-CDS-H-elongata_contig51598:2105..2315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51598 2106..2315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51598.12426.1

>prot_H-elongata_contig51598.12426.1 ID=prot_H-elongata_contig51598.12426.1|Name=mRNA_H-elongata_contig51598.12426.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
IWTYEGRQVSNPRFQNLRAEYLSRRVISLSEDAIAILDRVSPKSVRVCDV
STGRPLADGRTPEVLHDCEVEEVFLNQFAKGLGERRLAFIDRNKELWLCL
VQHPTVKGKAPPKYKLHTQVESAAWNDKSDVLVAIADSRLITWYYPNAVS
IDRDMLGLASTSIDAAEFGKSPRIMSFFGSTLMVRRADGALLSAAVAPYP
ATLYSSVRNQRWGEAIRLCRLVKNDELWACMACMALQGNNLPLSEEALSA
LKEV
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mRNA from alignment at H-elongata_contig51598:335..2315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51598.12426.1 ID=mRNA_H-elongata_contig51598.12426.1|Name=mRNA_H-elongata_contig51598.12426.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1981bp|location=Sequence derived from alignment at H-elongata_contig51598:335..2315- (Himanthalia elongata Himel1 dioecious)
ATCTGGACTTACGAGGGAAGACAGGTGAGTAATCCCCGCTTCCAAAACCT GCGAGCGGAGTACCTGAGCAGGCGAGTCATATCGCTATCGGAAGATGCCA TAGCGATCCTGGATAGGGTGTCGCCCAAGTCTGTTCGAGTCTGTGACGTC AGCACCGGGCGGCCTTTGGCGGATGGCAGGACGCCGGAGGTGTTGCATGA TTGCGAAGTGGTGAGCTGCGCATTTTGGGATGGAGGAGCGTGGTGAGATT GCCCATTTTATTTGTGATGCATATTGATTTGTCTTACACCGGGAGTCAGA ACGCAAGATCGCATGACATCGCCATCATCAGCTGGGATCACTTAGAAAGT GCCATGGCGCGGCATCGTGTAGTATATCACGTGATGAAAGCTCGGGTTTC TAACAGGAGGAGGTATTTCTGAACCAGTTCGCCAAGGGGCTGGGGGAGCG ACGGCTTGCGTTCATCGACCGCAATAAAGAGCTCTGGTTGTGCCTGGTGC AGCATCCGACGGTGAAGGGGAAAGCACCACCCAAATACAAGCTCCACACG CAGGTAACGACGGATGGCACATTCTTATGGGGCCGTTGTTGTTTCTGGAT TGCTGTGGCTACCATTGCTTCCGGATAATTGTGAGGGATTGTAGCAGAAG CAATCTCACCGCGATTGAGCGTGTCGATCTCGGATGACATGTGTAACTCT TCCCTGACCCGCGGTGCAAATACGCAGACAGTACTAGGATCCGTCCCCAT ATGACTCTGGTCGAGACGCGCAGCTCTATGGTGGAGATTTGGTTTCTAGT CGAAATGCGAGACGCCTCTATGATGCAGATTTTCTTGCGTTTCACAATCC ACTGAAATGGAGAATAGGATTCCACCGAAATCGTGCAAAATAATACTGTA TTAAGTTGTACCGGTATTTACTTTTCCCATCAGGTGGAAAGCGCGGCTTG GAATGATAAGAGTGACGTCCTCGTGGCCATAGCGGACAGTAGATTGATCA CCTGGTACTACCCTAACGCGGTGTCCATAGACAGGGATATGTTAGGGCTG GCGTCAACCTCTATAGACGCCGCTGAGTTCGGCAAGGTAGGCCCGAACGG CGCCTCGTCTTCGATAGGAATTATCGTATTCCACATTTTGTTTGTGAAGT GCATGTCCTCCGTGTGTGTGATGAGTTCATTCCGTCGAAGATGCTTTGGA AAAACGCTCATGTAATTCCGACCTACTGCCGTGGAATGTCTTATGGGGTA TCTTACGCATGAGGTGATCCGATATTGTATCCCGTTCCCGCTGTTGACGC ACATTGGTAGTCTCCTCGAATCATGTCCTTTTTTGGCTCGACGTTGATGG TGAGAAGAGCGGATGGAGCCCTCCTGAGCGCAGCCGTAGCTCCTTACCCA GCCACGCTTTATTCCTCCGTTAGAAATCAGCGCTGGGGGGAGGCTATCCG CCTATGTAGGTAAGAAAAACAATAAAAAAGGCTCTTATGTGGTCAGAGCT CGCCAACTTACGCCTCGATTGGCTTGATCATGCTGCTATTTAATAGTGGA AATCATGGAGAAGTCAAATAAGCATCGCCTCAAGGGCTCGTAATATTACT AGGGTCGAGAGTACTGGGGTTAATATTTGCATGTGGTGAGAACTGTAAGT CCCCATTTATTGGCCTGTGGTCGGCAAGGCGTCTCGCACACTCCAGCTCC TTGCGCCATCGGCATTCACAGTTACGAACGTGCACCTTTTGTCGGAGAAG TTCTTGCAAAACCTCCGTTTCACTTCGGACAAGGTTCAGAACACGACTGA ATGACGATTGAATCGAAAACTTCCGAAGCAAAAGTAGTTTCTTCCAAATA CTACTATGCTGATGTGCGACTGTGTCAGACTGGTGAAAAACGACGAGTTG TGGGCATGTATGGCCTGCATGGCGCTTCAAGGAAATAATCTTCCACTATC TGAAGAGGCATTGTCCGCCTTGAAGGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig51598:335..2315-

>mRNA_H-elongata_contig51598.12426.1 ID=mRNA_H-elongata_contig51598.12426.1|Name=mRNA_H-elongata_contig51598.12426.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig51598:335..2315- (Himanthalia elongata Himel1 dioecious)
ATCTGGACTTACGAGGGAAGACAGGTGAGTAATCCCCGCTTCCAAAACCT
GCGAGCGGAGTACCTGAGCAGGCGAGTCATATCGCTATCGGAAGATGCCA
TAGCGATCCTGGATAGGGTGTCGCCCAAGTCTGTTCGAGTCTGTGACGTC
AGCACCGGGCGGCCTTTGGCGGATGGCAGGACGCCGGAGGTGTTGCATGA
TTGCGAAGTGATCTGGACTTACGAGGGAAGACAGGTGAGTAATCCCCGCT
TCCAAAACCTGCGAGCGGAGTACCTGAGCAGGCGAGTCATATCGCTATCG
GAAGATGCCATAGCGATCCTGGATAGGGTGTCGCCCAAGTCTGTTCGAGT
CTGTGACGTCAGCACCGGGCGGCCTTTGGCGGATGGCAGGACGCCGGAGG
TGTTGCATGATTGCGAAGTGGAGGAGGTATTTCTGAACCAGTTCGCCAAG
GGGCTGGGGGAGCGACGGCTTGCGTTCATCGACCGCAATAAAGAGCTCTG
GTTGTGCCTGGTGCAGCATCCGACGGTGAAGGGGAAAGCACCACCCAAAT
ACAAGCTCCACACGCAGGAGGAGGTATTTCTGAACCAGTTCGCCAAGGGG
CTGGGGGAGCGACGGCTTGCGTTCATCGACCGCAATAAAGAGCTCTGGTT
GTGCCTGGTGCAGCATCCGACGGTGAAGGGGAAAGCACCACCCAAATACA
AGCTCCACACGCAGGTGGAAAGCGCGGCTTGGAATGATAAGAGTGACGTC
CTCGTGGCCATAGCGGACAGTAGATTGATCACCTGGTACTACCCTAACGC
GGTGTCCATAGACAGGGATATGTTAGGGCTGGCGTCAACCTCTATAGACG
CCGCTGAGTTCGGCAAGGTGGAAAGCGCGGCTTGGAATGATAAGAGTGAC
GTCCTCGTGGCCATAGCGGACAGTAGATTGATCACCTGGTACTACCCTAA
CGCGGTGTCCATAGACAGGGATATGTTAGGGCTGGCGTCAACCTCTATAG
ACGCCGCTGAGTTCGGCAAGTCTCCTCGAATCATGTCCTTTTTTGGCTCG
ACGTTGATGGTGAGAAGAGCGGATGGAGCCCTCCTGAGCGCAGCCGTAGC
TCCTTACCCAGCCACGCTTTATTCCTCCGTTAGAAATCAGCGCTGGGGGG
AGGCTATCCGCCTATGTAGTCTCCTCGAATCATGTCCTTTTTTGGCTCGA
CGTTGATGGTGAGAAGAGCGGATGGAGCCCTCCTGAGCGCAGCCGTAGCT
CCTTACCCAGCCACGCTTTATTCCTCCGTTAGAAATCAGCGCTGGGGGGA
GGCTATCCGCCTATGTAGACTGGTGAAAAACGACGAGTTGTGGGCATGTA
TGGCCTGCATGGCGCTTCAAGGAAATAATCTTCCACTATCTGAAGAGGCA
TTGTCCGCCTTGAAGGAGGTAACTGGTGAAAAACGACGAGTTGTGGGCAT
GTATGGCCTGCATGGCGCTTCAAGGAAATAATCTTCCACTATCTGAAGAG
GCATTGTCCGCCTTGAAGGAGGTA
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