mRNA_H-elongata_contig51559.12423.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51559.12423.1
Unique NamemRNA_H-elongata_contig51559.12423.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig51559.12423.1 vs. uniprot
Match: A0A6H5L5W0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.010e-10
Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = 2 
Query:   80 DIAANLPPSMEGWGGAF--DRGQRGRARGSAAASGSASWRSQETERLFDDGAWAEVPSSLPHAVDDDHHGDAVPRLAFPGTDNLLSLDLSALAASLRKIPAHERLQLPLAFTANLEPRSD 433
            D+ ++LP + E WG AF  + G++G   G  A S SA    +ETERL D+  WA   SS   A   +    +   +A PG   LLSL+L  L   LR +PAHERL+LP AFTA LE + +
Sbjct:   50 DLTSHLPSNTEKWGRAFGEEHGEQGGGGGRRAISTSAVG-VEETERLLDESEWAIGASSRRLAAPQEDDEPSYGAVAAPG--ELLSLNLEVLEVCLRTLPAHERLRLPHAFTAQLETQGE 166
[Close]
BLAST of mRNA_H-elongata_contig51559.12423.1 vs. uniprot
Match: D8LKQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ2_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 6.130e-6
Identity = 51/142 (35.92%), Postives = 65/142 (45.77%), Query Frame = 2 
Query:   23 ATTATPPQQWRRQTG-KVERDIAANLPPSMEGWGGAFDRGQRGRARGSAAASGSASWRSQETERLFDDGAWAEVPSSLPHAV----DDDHHGDAVPRLAFPGTDNLLSLDLSALAASLRKIPAHERLQLPLAFTANLEPRSD 433
            +T  TP   W   +G K    +     PS  G      RG+R  +  +           +ETERL D+  WA   SS   A     D+  HG A    A PG   LL+L+L  L   LR +PAHERL+LP A TA LE + D
Sbjct:   90 STRGTPKGAWLGASGLKSWTRVVLRQAPSTTGGXXXXXRGRRAISTSAVGV--------EETERLLDESEWAIGASSRHLAALQEDDEPSHGAA----AAPG--ELLALNLEVLEVCLRTLPAHERLRLPHALTAQLETQGD 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51559.12423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5W0_9PHAE1.010e-1042.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LKQ2_ECTSI6.130e-635.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51559contigH-elongata_contig51559:231..3226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1427
Cds size999
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51559.12423.1prot_H-elongata_contig51559.12423.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51559 553..3120 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930843.332515-UTR-H-elongata_contig51559:230..5521622930843.332515-UTR-H-elongata_contig51559:230..552Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51559 231..552 -
1691679594.0685043-UTR-H-elongata_contig51559:230..5521691679594.0685043-UTR-H-elongata_contig51559:230..552Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51559 231..552 -
1622930843.415684-UTR-H-elongata_contig51559:3120..32261622930843.415684-UTR-H-elongata_contig51559:3120..3226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51559 3121..3226 -
1691679594.1040742-UTR-H-elongata_contig51559:3120..32261691679594.1040742-UTR-H-elongata_contig51559:3120..3226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51559 3121..3226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930843.3487852-CDS-H-elongata_contig51559:552..12481622930843.3487852-CDS-H-elongata_contig51559:552..1248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51559 553..1248 -
1691679594.077452-CDS-H-elongata_contig51559:552..12481691679594.077452-CDS-H-elongata_contig51559:552..1248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51559 553..1248 -
1622930843.3612347-CDS-H-elongata_contig51559:1877..19521622930843.3612347-CDS-H-elongata_contig51559:1877..1952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51559 1878..1952 -
1691679594.086196-CDS-H-elongata_contig51559:1877..19521691679594.086196-CDS-H-elongata_contig51559:1877..1952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51559 1878..1952 -
1622930843.4022586-CDS-H-elongata_contig51559:2892..31201622930843.4022586-CDS-H-elongata_contig51559:2892..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51559 2893..3120 -
1691679594.095244-CDS-H-elongata_contig51559:2892..31201691679594.095244-CDS-H-elongata_contig51559:2892..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51559 2893..3120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51559.12423.1

>prot_H-elongata_contig51559.12423.1 ID=prot_H-elongata_contig51559.12423.1|Name=mRNA_H-elongata_contig51559.12423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=333bp
MEGWGGAFDRGQRGRARGSAAASGSASWRSQETERLFDDGAWAEVPSSLP
HAVDDDHHGDAVPRLAFPGTDNLLSLDLSALAASLRKIPAHERLQLPLAF
TANLEPRSDSALEPLTFSVEAPMSTSHDRDPRCDTADVDVHKPRVAVPTT
YRPQISGVIDAAERRRRGDVNMAVGESELGGPLAALSGRSGGWEREGSRD
RTAAPVPAASTTMENDGVLDALLGLTVTDAFSAAMAPSDVPGAAGAEASG
GYSRGSIGKNAGIMSGAIYADGEPRSPPMDGLRIEKHSDGSTRLGGIERR
VGARTNASASTGRSAVAANELEEWLDDVLGES*
back to top

mRNA from alignment at H-elongata_contig51559:231..3226-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51559.12423.1 ID=mRNA_H-elongata_contig51559.12423.1|Name=mRNA_H-elongata_contig51559.12423.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2996bp|location=Sequence derived from alignment at H-elongata_contig51559:231..3226- (Himanthalia elongata Himel1 dioecious)
AGTGTCAAAACCAATCGGTGCTGCTACTACTGCTACGCCACCACAGCAGT
GGCGGCGACAGACGGGAAAGGTGGAGCGAGACATCGCTGCGAATTTGCCG
CCGAGCATGGAAGGGTGGGGCGGCGCTTTTGACAGAGGGCAGCGCGGGCG
CGCCCGGGGTTCGGCGGCGGCCTCCGGGAGTGCATCTTGGCGTTCCCAGG
AAACGGAAAGGCTGTTTGACGACGGGGCGTGGGCAGAGGTTCCCTCGTCC
TTACCACACGCCGTGGACGACGACCACCACGGCGATGCAGTTCCTCGGCT
AGCGTTCCCGGGCACGGATAATTTATTATCCCTGGTGAGAACAAGGGCGC
GATGTGACGTGGCGGGGCGGGGCGGGGCGGGGTCAACTGTCGTTGTGTTA
CTTACCTAGTAGGATATACCGGTAGCGGATTGCGCCTCTTCCCGTTCCTT
CAGGGGAGAATTGCTTGCCCCCCCCCTCCCCCTCCCCTCCCTTTTAATTA
CGTCTTAAATATATGTATATATATATTATATTTTTATAGCTCGTCAAAAT
TAACATCCTAGTCAATACACTGGTTTATTTTGGTATGGTTGTGTCCGTGC
GTCGTGTCGTACCTAGGCGCGCGGGCTACTGTAAAATGATTTAAAGAGTG
AGCGCGTTGCGTGGTGCTCGCGATCGAGAAGAGAGAAGAGGAGAAGAATA
AGAGTGGTGTGGTCTTGCCACGCCCCCTATGCGTGGGGTCTCCGAATCCA
GGGGGGGGTTCTGATTTTTTCCCTCTGTCGTTAGCCCTCCAATAATGTGC
AGTATTATTTGTATTCATTGTGGAAGTCAAGGAGGTGAGAAGAGGGAAGG
GGGGCGGGGAGGGGGCATAGCCAATTTTCTTACACCATTGGAGAGGGTGT
CAGTTGCCTCTTTGTCTAGACAGACTGGAAAGAGAGACGTTCCTCAATAA
TTTATCTACCTCCAGGATCCGGTTGAATATGTTATGCGGTTCGGTTTGAC
TTGACTTGACCCGAAAAGGTCTGAAAGCGGGAATATACTAATAATAGTGC
TAGGAGAGGAATCACGTTTATATACTATAACAGGTACTCGGTATATATAT
ACATATACATAAATATACAAACATTGAGGCACCTTTTTCCATCCTGACGC
CCGTTCGCCACGAACCGGGACTCTGTGTCGAAGATACCTAAGGTCTTGTT
CCGTTGCATCCCCCGTTTCGCCTTACGAAGAAGCACGCGCCCATCTTGCC
TTCCGTGTGTCCGCCTGGCTCCAGGATTTGAGCGCGCTCGCCGCGAGCTT
AAGAAAAATACCCGCCCATGAACGCCTGCAGCTGCCGCTGGCATTCACCG
TGAGTCTCTTCGTTGCGACGCGGAAATTAGGAGAGTGGGAAGGGGGAGGG
GGGGGATGAACAGAGAAGCATTGGGGTCCCGTACGCGACGTACCCGCAGA
AGATCATATCCTTGTTTCTTTCCTCTTGAGTTTCGTAGCCGATCCTCTTC
CCCTGTGTAACATTTTTGTCTTCCTTTGTTAAGTGGGATGATGTGGTAAT
TACGTCGCAGTCTGAGGAAGATAAAGGGGTAAGAGCCGGATGGTGAGCGT
AGATATAGAGGGTAGAAGTGATGTTTAGGGGCAGGGGCGATTCTTCCGCT
AGGGAGAGGGAGCGTCGACGTCGCGTACGCAAAGGCGCCCCCATTTCCTC
TGTCGCTCGGCCTCAAAACAAATTGGACGCTCCTCCTCTCATGTGTGTTC
GCTTCTTGCTCGCGAGTCCAACTTAATGAGGCGTTTTTAGTAATCACCGT
TACCGTTTCATCAAAAGAGCGATACGACAAGGCAATACGCACCTTATCGT
TGGATTCAGCCTGGCTGATGACTGTGCTCCAGTATCGAACGATGCGCTCG
ATCTCACGATACTCCCGCGACCACTGCCGCTGCCGCTCTTTTTCCGTCCA
CCTCTTTCTCCTTCTTCTCTTGCACCAGGCGAACCTCGAGCCCCGCTCCG
ACTCTGCTCTGGAGCCGTTGACGTTTTCAGTAGAGGCGCCGATGAGCACA
TCACACGACAGAGACCCTCGATGTGACACGGCTGACGTCGACGTCCACAA
ACCTCGCGTTGCGGTTCCCACGACATATAGGCCCCAGATTTCGGGCGTCA
TAGACGCTGCCGAGCGCAGACGGCGCGGCGATGTAAACATGGCGGTGGGA
GAATCGGAACTGGGAGGCCCGCTCGCGGCGCTGAGCGGAAGAAGCGGTGG
ATGGGAAAGAGAAGGATCTCGTGATCGTACAGCGGCACCAGTGCCTGCTG
CAAGTACGACGATGGAAAATGACGGAGTACTGGATGCGTTGTTAGGGCTA
ACCGTCACGGACGCCTTTTCCGCGGCGATGGCCCCTTCGGATGTTCCAGG
TGCGGCCGGGGCTGAAGCAAGTGGTGGCTATAGCCGTGGCAGCATTGGCA
AAAATGCGGGAATCATGAGCGGTGCTATCTACGCCGATGGCGAGCCGCGG
TCTCCACCAATGGACGGCTTAAGGATAGAAAAGCACAGTGATGGGAGCAC
ACGACTCGGAGGGATCGAGCGACGAGTTGGCGCCCGAACGAACGCGAGCG
CGAGCACTGGAAGAAGTGCCGTTGCCGCGAACGAGCTAGAAGAATGGCTG
GATGACGTGTTGGGGGAATCATGAGGGCCGAACCCGCCTTTTCCGGTACA
TCGGCTGTACGCATGATCGGGGGCGGGAACGCGTATAAGCAACGAGAAGC
AAGAAAACTCTGACCACGATCGCTCGCGTGCGCTCAAGCATTATTTTTGT
ACTACTATCGAGTTTGTATTTCCGGAAGTGCCTCTACGATTGGGTCTTTG
CGGTCGATCGGCCGCGCGCGCGCGACTTGCCAATCCCAGACTCTAATCGG
AGGATGCCACCTTATAATACGCGCCACGTCGTGGTCCGCGCCCAGAAAGA
AATCTAAAGGAAAATCGTTTAATGTGGCGGCGGTGTGCTTTTCAAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51559:231..3226-

>mRNA_H-elongata_contig51559.12423.1 ID=mRNA_H-elongata_contig51559.12423.1|Name=mRNA_H-elongata_contig51559.12423.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at H-elongata_contig51559:231..3226- (Himanthalia elongata Himel1 dioecious)
ATGGAAGGGTGGGGCGGCGCTTTTGACAGAGGGCAGCGCGGGCGCGCCCG
GGGTTCGGCGGCGGCCTCCGGGAGTGCATCTTGGCGTTCCCAGGAAACGG
AAAGGCTGTTTGACGACGGGGCGTGGGCAGAGGTTCCCTCGTCCTTACCA
CACGCCGTGGACGACGACCACCACGGCGATGCAGTTCCTCGGCTAGCGTT
CCCGGGCACGGATAATTTATTATCCCTGATGGAAGGGTGGGGCGGCGCTT
TTGACAGAGGGCAGCGCGGGCGCGCCCGGGGTTCGGCGGCGGCCTCCGGG
AGTGCATCTTGGCGTTCCCAGGAAACGGAAAGGCTGTTTGACGACGGGGC
GTGGGCAGAGGTTCCCTCGTCCTTACCACACGCCGTGGACGACGACCACC
ACGGCGATGCAGTTCCTCGGCTAGCGTTCCCGGGCACGGATAATTTATTA
TCCCTGGATTTGAGCGCGCTCGCCGCGAGCTTAAGAAAAATACCCGCCCA
TGAACGCCTGCAGCTGCCGCTGGCATTCACCGATTTGAGCGCGCTCGCCG
CGAGCTTAAGAAAAATACCCGCCCATGAACGCCTGCAGCTGCCGCTGGCA
TTCACCGCGAACCTCGAGCCCCGCTCCGACTCTGCTCTGGAGCCGTTGAC
GTTTTCAGTAGAGGCGCCGATGAGCACATCACACGACAGAGACCCTCGAT
GTGACACGGCTGACGTCGACGTCCACAAACCTCGCGTTGCGGTTCCCACG
ACATATAGGCCCCAGATTTCGGGCGTCATAGACGCTGCCGAGCGCAGACG
GCGCGGCGATGTAAACATGGCGGTGGGAGAATCGGAACTGGGAGGCCCGC
TCGCGGCGCTGAGCGGAAGAAGCGGTGGATGGGAAAGAGAAGGATCTCGT
GATCGTACAGCGGCACCAGTGCCTGCTGCAAGTACGACGATGGAAAATGA
CGGAGTACTGGATGCGTTGTTAGGGCTAACCGTCACGGACGCCTTTTCCG
CGGCGATGGCCCCTTCGGATGTTCCAGGTGCGGCCGGGGCTGAAGCAAGT
GGTGGCTATAGCCGTGGCAGCATTGGCAAAAATGCGGGAATCATGAGCGG
TGCTATCTACGCCGATGGCGAGCCGCGGTCTCCACCAATGGACGGCTTAA
GGATAGAAAAGCACAGTGATGGGAGCACACGACTCGGAGGGATCGAGCGA
CGAGTTGGCGCCCGAACGAACGCGAGCGCGAGCACTGGAAGAAGTGCCGT
TGCCGCGAACGAGCTAGAAGAATGGCTGGATGACGTGTTGGGGGAATCAT
GAGCGAACCTCGAGCCCCGCTCCGACTCTGCTCTGGAGCCGTTGACGTTT
TCAGTAGAGGCGCCGATGAGCACATCACACGACAGAGACCCTCGATGTGA
CACGGCTGACGTCGACGTCCACAAACCTCGCGTTGCGGTTCCCACGACAT
ATAGGCCCCAGATTTCGGGCGTCATAGACGCTGCCGAGCGCAGACGGCGC
GGCGATGTAAACATGGCGGTGGGAGAATCGGAACTGGGAGGCCCGCTCGC
GGCGCTGAGCGGAAGAAGCGGTGGATGGGAAAGAGAAGGATCTCGTGATC
GTACAGCGGCACCAGTGCCTGCTGCAAGTACGACGATGGAAAATGACGGA
GTACTGGATGCGTTGTTAGGGCTAACCGTCACGGACGCCTTTTCCGCGGC
GATGGCCCCTTCGGATGTTCCAGGTGCGGCCGGGGCTGAAGCAAGTGGTG
GCTATAGCCGTGGCAGCATTGGCAAAAATGCGGGAATCATGAGCGGTGCT
ATCTACGCCGATGGCGAGCCGCGGTCTCCACCAATGGACGGCTTAAGGAT
AGAAAAGCACAGTGATGGGAGCACACGACTCGGAGGGATCGAGCGACGAG
TTGGCGCCCGAACGAACGCGAGCGCGAGCACTGGAAGAAGTGCCGTTGCC
GCGAACGAGCTAGAAGAATGGCTGGATGACGTGTTGGGGGAATCATGA
back to top