mRNA_H-elongata_contig51535.12419.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51535.12419.1
Unique NamemRNA_H-elongata_contig51535.12419.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51535.12419.1 vs. uniprot
Match: D7FHL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL8_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 9.530e-77
Identity = 114/142 (80.28%), Postives = 130/142 (91.55%), Query Frame = 1 
Query:    1 DSLEFLEMDTACEKRVFVCTNRWCIEKGSSATLGSFVGLAPQGEVSVQGVNCLGRCNKGPNLRVRKADGKWLEFNRIDSVERVYKILKDYLGAQVSKKAALCLKYNFLANGALDRNEVAMAIDYYDKAIATGYLDQQGVLLV 426
            DSLE+ E+ T C+KRV++CTNRWC+EKGS+ATLGSFVGLAP+GEV VQGVNCLGRCNKGPN+RVR+  G WLEFNRI++VERVYKIL+DYLGA VSK+AALCLKYNFLAN AL+RNEV +AIDYYDKAI TGY DQQGVLLV
Sbjct:  178 DSLEWSEVGTECQKRVYICTNRWCMEKGSAATLGSFVGLAPEGEVLVQGVNCLGRCNKGPNVRVRQETGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALNRNEVTLAIDYYDKAIDTGYADQQGVLLV 319
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BLAST of mRNA_H-elongata_contig51535.12419.1 vs. uniprot
Match: A0A835YYQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ6_9STRA)

HSP 1 Score: 184 bits (468), Expect = 5.800e-54
Identity = 98/155 (63.23%), Postives = 111/155 (71.61%), Query Frame = 1 
Query:   10 EFLEMDTACEKRVFVCTNRWCIEKGSSATLGSFVGLAPQGEVSVQGVNCLGRCNK----------------GPNLRVRKADGKWLEFNRIDSVERVYKILKDYLGAQVSKKAALCLKYNFLANGALDRNEVAMAIDYYDKAIATGYLDQQGVLLV 426
            +FLE  T   KRVFVCTNRWC E+GS ATL SFVGLAP+ EV VQGVNCLGRCN                 GPNLRV + DG WLEFNRIDSVERVYKIL+D+L   VS+ AA CLKYNF  N  LD+NEV  AI+ Y+KAI+ G+ DQ+GVLLV
Sbjct:   12 DFLEGATQT-KRVFVCTNRWCKERGSGATLSSFVGLAPEDEVLVQGVNCLGRCNXXXXXXXXXXXXXXXXXGPNLRVLQEDGTWLEFNRIDSVERVYKILRDFLSVGVSRTAAECLKYNFQGNSHLDKNEVTEAIECYNKAISMGWADQEGVLLV 165
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BLAST of mRNA_H-elongata_contig51535.12419.1 vs. uniprot
Match: A0A7R9U417_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U417_9STRA)

HSP 1 Score: 161 bits (407), Expect = 6.980e-46
Identity = 76/128 (59.38%), Postives = 94/128 (73.44%), Query Frame = 1 
Query:   43 RVFVCTNRWCIEKGSSATLGSFVGLAPQGEVSVQGVNCLGRCNKGPNLRVRKADGKWLEFNRIDSVERVYKILKDYLGAQVSKKAALCLKYNFLANGALDRNEVAMAIDYYDKAIATGYLDQQGVLLV 426
            RV VCTNRWC EKGS ATL SF+GL P   V V GV CLG+CNKGPN+++   +G W E NR+DSV++VY+IL D+L  +VS  AA CL++NF  N  LDRNEV  AI  Y+KAI  G+ DQ+GV+LV
Sbjct:   41 RVNVCTNRWCKEKGSGATLASFIGLIPDDNVLVSGVGCLGKCNKGPNIQIMHRNGTWYELNRVDSVDKVYRILTDHLQCRVSPAAAECLQHNFEGNAHLDRNEVTQAIASYNKAIDAGFKDQEGVILV 168
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BLAST of mRNA_H-elongata_contig51535.12419.1 vs. uniprot
Match: W7U8R6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8R6_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.230e-39
Identity = 67/135 (49.63%), Postives = 99/135 (73.33%), Query Frame = 1 
Query:   25 DTACEKRVFVCTNRWCIEKGSSATLGSFVGLAPQG-EVSVQGVNCLGRCNKGPNLRVRKADGKWLEFNRIDSVERVYKILKDYLGAQVSKKAALCLKYNFLANGALDRNEVAMAIDYYDKAIATGYLDQQGVLLV 426
            D    ++VF+CT+RWC+++G+ AT+GSF+GL P G +V VQGV+CLGRCN+GPNLR+ +++G + E + +DSV++VY +    LG ++++ +A CLK NF  N  LD+NEV  AI+ YDKAI   +  Q+GVL V
Sbjct:  189 DPVTVQQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRV 323
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BLAST of mRNA_H-elongata_contig51535.12419.1 vs. uniprot
Match: A0A4D9DHN8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DHN8_9STRA)

HSP 1 Score: 124 bits (310), Expect = 6.420e-32
Identity = 59/119 (49.58%), Postives = 87/119 (73.11%), Query Frame = 1 
Query:   73 IEKGSSATLGSFVGLAPQG-EVSVQGVNCLGRCNKGPNLRVRKADGKWLEFNRIDSVERVYKILKDYLGAQVSKKAALCLKYNFLANGALDRNEVAMAIDYYDKAIATGYLDQQGVLLV 426
            +++G+ AT+GSF+GL P G +V VQGV+CLGRCN+GPNLR+ +++G + E + +DSV++VY +    LG ++++ +A CLK NF  N  LD+NEV  AI+ YDKAI   +  Q+GVL V
Sbjct:    1 MQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRV 119
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BLAST of mRNA_H-elongata_contig51535.12419.1 vs. uniprot
Match: A0A7S3XUL9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUL9_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 1.150e-19
Identity = 44/99 (44.44%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:  127 GEVSVQGVNCLGRCNKGPNLRVRKADGKWLEFNRIDSVERVYKILKDYLGAQVSKKAALCLKYNFLANGALDRNEVAMAIDYYDKAIATGY-LDQQGVL 420
            G V+V GV+CLGRC +GPN+R +     WL+F+ +DSV++  +IL + +G  VS+K A CL  N   N  L  N+V  A+++YD+A+A G   DQ+GV+
Sbjct:    5 GAVNVDGVSCLGRCKRGPNVRCQLGRDAWLDFSGVDSVDQARQILVETMGVPVSQKVATCLDMNLKGNYYLANNKVGKALEHYDRALAAGRGTDQEGVV 103
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BLAST of mRNA_H-elongata_contig51535.12419.1 vs. uniprot
Match: A0A7S1Z4G4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4G4_TRICV)

HSP 1 Score: 69.3 bits (168), Expect = 1.630e-11
Identity = 33/69 (47.83%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:  223 NRIDSVERVYKILKDYLG-AQVSKKAALCLKYNFLANGALDRNEVAMAIDYYDKAIATGYLDQQGVLLV 426
            N +DSV++VY+IL  ++G A +S  A  CLK+N+  N  L++ ++A AI  YDKAI TGY++Q+GV+L+
Sbjct:    2 NNVDSVDKVYRILTKHMGIAGISSVACECLKWNYRGNAHLEKGDIADAIAAYDKAIDTGYVEQEGVVLL 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51535.12419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FHL8_ECTSI9.530e-7780.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YYQ6_9STRA5.800e-5463.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U417_9STRA6.980e-4659.38Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7U8R6_9STRA1.230e-3949.63Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9DHN8_9STRA6.420e-3249.58Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3XUL9_HETAK1.150e-1944.44Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1Z4G4_TRICV1.630e-1147.83Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51535contigH-elongata_contig51535:1809..3717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-24_004090.1
Exons4
Model size426
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51535.12419.1prot_H-elongata_contig51535.12419.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51535 1830..3717 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930842.9648566-UTR-H-elongata_contig51535:1808..18291622930842.9648566-UTR-H-elongata_contig51535:1808..1829Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51535 1809..1829 +
1691679593.9601834-UTR-H-elongata_contig51535:1808..18291691679593.9601834-UTR-H-elongata_contig51535:1808..1829Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51535 1809..1829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930842.9839504-CDS-H-elongata_contig51535:1829..18731622930842.9839504-CDS-H-elongata_contig51535:1829..1873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51535 1830..1873 +
1691679593.9678547-CDS-H-elongata_contig51535:1829..18731691679593.9678547-CDS-H-elongata_contig51535:1829..1873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51535 1830..1873 +
1622930843.0066967-CDS-H-elongata_contig51535:2230..23291622930843.0066967-CDS-H-elongata_contig51535:2230..2329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51535 2231..2329 +
1691679593.9754567-CDS-H-elongata_contig51535:2230..23291691679593.9754567-CDS-H-elongata_contig51535:2230..2329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51535 2231..2329 +
1622930843.0285072-CDS-H-elongata_contig51535:2940..30581622930843.0285072-CDS-H-elongata_contig51535:2940..3058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51535 2941..3058 +
1691679593.983002-CDS-H-elongata_contig51535:2940..30581691679593.983002-CDS-H-elongata_contig51535:2940..3058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51535 2941..3058 +
1622930843.0513687-CDS-H-elongata_contig51535:3573..37171622930843.0513687-CDS-H-elongata_contig51535:3573..3717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51535 3574..3717 +
1691679593.9908245-CDS-H-elongata_contig51535:3573..37171691679593.9908245-CDS-H-elongata_contig51535:3573..3717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51535 3574..3717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51535.12419.1

>prot_H-elongata_contig51535.12419.1 ID=prot_H-elongata_contig51535.12419.1|Name=mRNA_H-elongata_contig51535.12419.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MDTACEKRVFVCTNRWCIEKGSSATLGSFVGLAPQGEVSVQGVNCLGRCN
KGPNLRVRKADGKWLEFNRIDSVERVYKILKDYLGAQVSKKAALCLKYNF
LANGALDRNEVAMAIDYYDKAIATGYLDQQGVLLV
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mRNA from alignment at H-elongata_contig51535:1809..3717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51535.12419.1 ID=mRNA_H-elongata_contig51535.12419.1|Name=mRNA_H-elongata_contig51535.12419.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1909bp|location=Sequence derived from alignment at H-elongata_contig51535:1809..3717+ (Himanthalia elongata Himel1 dioecious)
GACAGCCTGGAGTTTTTAGAGATGGACACGGCGTGCGAGAAAAGAGTGTT
CGTTTGCACCAACAGGTACTGTACACCGACATGCCCGTAACGTAGGTGAA
ACCTTGGTGAAGGTTTATTTCGCTAGCGTGGAGCTGTTTCGTGTCTTCGT
GGTAATCAGTGTATGAAGTAAATGAAACGATGTGGTTCACCGAGGATCTC
CTCGCGGTGCACGCCCACGTCAGCGTGGCGCTTCGATGGAGCGCGTACTT
GGCGGTATTTTCGTAGGTGGTAGGTTTGCGCTGACGCCATCTCATCGTTG
ATGTTCAGTCACAGACGCTTATGTTGCCGTGTGGTGTAGTCAATCCCGTT
GCTCATTTTTTGTCCGTCATTTTTTTTTGTTCCAAGCCACCACTCGTGTC
CCCCGCGTCTCGCACTTGCAAGATGGTGCATAGAAAAAGGCTCCTCGGCC
ACCCTGGGATCATTCGTGGGACTCGCACCCCAAGGCGAAGTCTCCGTTCA
AGGGGTCAACTGCCTCGGCAGGTGGGTGGGCACCGTATCCGTCGTCCAGC
GATGTCCGAGGCGGTCTCAGCCGGGTAATCGAGAGGCGTGTTCTCCTTCC
ACATGATATCTACATGTTATAGGTGAACATTCCACCAATTTGTTACATAT
CGTGGTGCCGATCCCCTCCCCGACCCTAAGAGCGTACCGTAACATGCATC
TCCGGCACGGATACCGGCAATGTTCGGCGATGTCCGAGATTGAAAAAAAA
TGAAGACGACCATCCACCGCTTTATAAAGGTGTAGATCAAGGAAAGAGCA
CTCCTCCAAAGGAACGCTAAAAAGAGAGGAGTGGCTCACATGCTTCGCCT
TTGCAGGCTAGTCCCAACCTCGTTGGACCGTTGGACCGTTCGATTCGCTG
CCCGCGAGACTCTCTCCCCATTACCCGCGATTTTTCTTTAATGTTTATTA
AAAAATCCTTTGAACTCATTCCAACCCTCCGAACATCCACATCTTCTTAA
CACCGTGGGAGGTGTAATCCAGGGGACCAACTATCGCTAGGTTCGAATGT
GAACATTATTACCTTTAAGCACAAAATCGTCACACGTGATACATTCGATT
GTTTGTTTTATTTGCGGCTTCGTCTGTTTTAGGTGCAACAAGGGCCCTAA
TCTGCGCGTGCGGAAGGCGGACGGGAAGTGGCTGGAGTTCAACCGCATCG
ATAGTGTGGAAAGAGTGTATAAGATTCTCAAGGACTACCTGGGCGCCCAG
GTGAACGCCACAGCCGCCGAGATGGCGTCACGCGACAAGTACATTCACCT
TTAGCCGCCGTTGTAACCGTTAACTGTTACTGTTACTGTAGATGATTGTA
AATGCTCGAGATTATGTGGGCGACCAAACCGCCACGCCGAGGAGGGCATC
CCGACTCGAGGCTCATCTTAAGCTGGAGACAGAGTACATGCTAGAAACGG
GACGGAGAGTTCTGACTGGGCCCACGTTTGAGGTGTACGACTCACACGGG
CAAAGGAGCCTTTGTCACAAAAGCTCTCAGGCCATGCACCTGCGCCCCTG
GTCGATGTACTCTTAAATACTATGAAACGTAGCTCCTACTCGTCGCCCCC
CTCAATGTTGTCAGGTTTATTTGGTTATTTTTCCTACATCCTACCTCGTC
TTGTTGTACTTGGGGTTTGTAATCCAATCATCAATCATCGTTCATCATTG
TTTGTCGCAAGTGGACATGGATATGTAACGGGCGATCGACCGATCGACCC
CTTTGGGATGCACAGGTCTCAAAGAAAGCGGCGCTGTGCCTCAAGTACAA
CTTCCTTGCCAATGGCGCCCTGGACCGCAACGAAGTGGCCATGGCCATCG
ACTACTACGACAAGGCGATAGCCACCGGATACTTGGATCAGCAGGGAGTG
CTTCTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig51535:1809..3717+

>mRNA_H-elongata_contig51535.12419.1 ID=mRNA_H-elongata_contig51535.12419.1|Name=mRNA_H-elongata_contig51535.12419.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig51535:1809..3717+ (Himanthalia elongata Himel1 dioecious)
ATGGACACGGCGTGCGAGAAAAGAGTGTTCGTTTGCACCAACAGATGGAC
ACGGCGTGCGAGAAAAGAGTGTTCGTTTGCACCAACAGATGGTGCATAGA
AAAAGGCTCCTCGGCCACCCTGGGATCATTCGTGGGACTCGCACCCCAAG
GCGAAGTCTCCGTTCAAGGGGTCAACTGCCTCGGCAGATGGTGCATAGAA
AAAGGCTCCTCGGCCACCCTGGGATCATTCGTGGGACTCGCACCCCAAGG
CGAAGTCTCCGTTCAAGGGGTCAACTGCCTCGGCAGGTGCAACAAGGGCC
CTAATCTGCGCGTGCGGAAGGCGGACGGGAAGTGGCTGGAGTTCAACCGC
ATCGATAGTGTGGAAAGAGTGTATAAGATTCTCAAGGACTACCTGGGCGC
CCAGGTGCAACAAGGGCCCTAATCTGCGCGTGCGGAAGGCGGACGGGAAG
TGGCTGGAGTTCAACCGCATCGATAGTGTGGAAAGAGTGTATAAGATTCT
CAAGGACTACCTGGGCGCCCAGGTCTCAAAGAAAGCGGCGCTGTGCCTCA
AGTACAACTTCCTTGCCAATGGCGCCCTGGACCGCAACGAAGTGGCCATG
GCCATCGACTACTACGACAAGGCGATAGCCACCGGATACTTGGATCAGCA
GGGAGTGCTTCTGGTGGTCTCAAAGAAAGCGGCGCTGTGCCTCAAGTACA
ACTTCCTTGCCAATGGCGCCCTGGACCGCAACGAAGTGGCCATGGCCATC
GACTACTACGACAAGGCGATAGCCACCGGATACTTGGATCAGCAGGGAGT
GCTTCTGGTG
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