mRNA_H-elongata_contig51517.12415.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: D8LTW9_ECTSI (Bardet-Bield syndrome 8, Tetratricopeptide repeat domain 8 isoform B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW9_ECTSI) HSP 1 Score: 272 bits (695), Expect = 2.450e-89 Identity = 141/185 (76.22%), Postives = 161/185 (87.03%), Query Frame = 1
Query: 1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKA 555
+R + STGRPLTGFQR RPVSGQA DL T + G+RPA+SRPLTSMGRE+RLGTA MA SA G+ +G FI+SS+LDLRRYARRP+LAMAL DYL++VERNPR+ALDL AE TTLKEF +WWWKARLGKCYYKLGMLREAERQLKSSL+DQDMV T+L+LVKVYTRLDLPNTALD+L+KA
Sbjct: 39 MRPMTSTGRPLTGFQRPGITVRPVSGQAMDLTTAMTGSRPASSRPLTSMGREVRLGTASMAL-SAGSGE-AGGLFIDSSRLDLRRYARRPSLAMALADYLVFVERNPRKALDLAAEATTLKEFKDWWWKARLGKCYYKLGMLREAERQLKSSLMDQDMVVTYLDLVKVYTRLDLPNTALDLLLKA 221
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A7S1CCY2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCY2_9STRA) HSP 1 Score: 248 bits (633), Expect = 3.680e-76 Identity = 129/238 (54.20%), Postives = 164/238 (68.91%), Query Frame = 1
Query: 1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT----VLSLDASNVEATASLAANHFY 702
+R V GRPLTGF R T TRP +G + + G RP TSRP+T++GR++RLGTA M A + G PF+ +LDLR+YARR +A AL DYLLYVE NPR+AL+L AE T EF +WWWKARLGKCYY+LG+ R+AERQ KS+L D DM+ ++LEL KVY +LD PNTA+D +K +E HP E +L+ AR +D+LND + VL DASNVEA A LA++HFY
Sbjct: 113 VRPVTGAGRPLTGFARPGTSTRPSTGSVS-VGDAFKGGRPGTSRPVTALGRQVRLGTASMTATA-------GGPFVNVDRLDLRKYARRSIIAKALCDYLLYVEHNPRKALELAAEATVRAEFKDWWWKARLGKCYYQLGLFRDAERQFKSALRDTDMIVSYLELCKVYVKLDQPNTAIDNYLKGAELHPGETSLLVGVARIYDMLNDAKGTDYYKKVLKYDASNVEAVACLASHHFY 342
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A7S3UNH3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNH3_HETAK) HSP 1 Score: 243 bits (619), Expect = 1.150e-75 Identity = 126/207 (60.87%), Postives = 153/207 (73.91%), Query Frame = 1
Query: 97 TTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT-----VLSLDASNVEATASLAANHFY 702
T + G RP TSRP+TS+GRE+RLGTA MA D G PFI +LDL +YA+RP L+M L +YL+Y +RN R+ L+L AE T E+ +WWWKARLGKCYYKLG+ R+AERQLKSSL DQDMV T LELVKVY +LDLPNTALD++ +A+ HP E R+LL AR HD+L+D E A VL LD+SNVEA +SLAANHFY
Sbjct: 5 TAMKGNRPGTSRPVTSLGRELRLGTASMAT-------DIGGPFINVDRLDLAKYAKRPTLSMVLCEYLVYHDRNARKGLELAAEATVHHEYKDWWWKARLGKCYYKLGLYRDAERQLKSSLKDQDMVVTVLELVKVYVKLDLPNTALDLMTEAAARHPGESRLLLGIARIHDMLSDHEAAVGYYKKVLQLDSSNVEAISSLAANHFY 204
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A836CMW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW3_9STRA) HSP 1 Score: 243 bits (620), Expect = 1.770e-74 Identity = 125/214 (58.41%), Postives = 159/214 (74.30%), Query Frame = 1
Query: 76 GQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENA-----TVLSLDASNVEATASLAANHFY 702
GQ D+ T + G RP TSRP T++GRE+RLGTA ++ GA F+++ +LDL+R A+R ALA AL +YLLYVERNPR+AL+L AE T +F +WWWKARLG+CY+KLGM R+AE+QLKSSL DQDM+ THLELVKVY RLDLPNTALD+L +A+ H + R+ LA+AR H+ L+ E A T L+LD +NVEATASLA N+FY
Sbjct: 112 GQQMDVSTAMRGPRPGTSRPATALGREVRLGTA-------SLDSGGGAAFVDTDRLDLKRMAKRGALAAALVEYLLYVERNPRKALELAAEATAAADFKDWWWKARLGRCYHKLGMYRDAEKQLKSSLKDQDMLLTHLELVKVYQRLDLPNTALDLLARAAVRHDGDARLALASARLHEALSAAEAAGAAYKTALALDPTNVEATASLAVNYFY 318
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: H3G905_PHYRM (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3G905_PHYRM) HSP 1 Score: 242 bits (618), Expect = 5.100e-74 Identity = 132/239 (55.23%), Postives = 169/239 (70.71%), Query Frame = 1
Query: 1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT-----VLSLDASNVEATASLAANHFY 702
LR + +TGRPL+GF R T +RP +G + + L G RP TSRP T++GR++RLGTA M A+ DSG FI+ ++LD +RYA+RPA+A AL DYLLY E NPRRAL+L AE T ++ +WWWKARLGKCYY+LG+ R+AE+Q +SSL +QDMV T LEL KVY RLD PNTALD K P + ++L++ AR HD+LND E + VL LDASNVEA A LA+N+FY
Sbjct: 103 LRPMTATGRPLSGFARPGTSSRPGTGSMS-VDRALQGNRPGTSRPATTLGRQVRLGTASMQAS------DSGV-FIDVNRLDFKRYAKRPAIAKALVDYLLYCEHNPRRALELAAEATVAADYKDWWWKARLGKCYYQLGLFRDAEKQFESSLRNQDMVITFLELGKVYLRLDQPNTALDRYEKGKAKFPGDTQLLVSIARVHDMLNDVEKSVSVYKEVLQLDASNVEAIACLASNYFY 333
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A5D6YDS4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDS4_9STRA) HSP 1 Score: 231 bits (589), Expect = 1.350e-69 Identity = 127/239 (53.14%), Postives = 170/239 (71.13%), Query Frame = 1
Query: 1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT-----VLSLDASNVEATASLAANHFY 702
+R + STGRPL+GF R T +RP +G + L L G+RP TSRP T++GR++RLGTA M + A++ FI+ ++LDL+RYA RPA+A AL DYLLY E NPR+AL+L AE T ++ +WWWKARLGKCYY+LG+ R+AE+Q +SSL Q+MV T LEL KVY RLD PNTAL +A + P + ++L+A+AR HD+LND + + VL+LDAS+VEA A LA+N FY
Sbjct: 113 VRPMTSTGRPLSGFARPGTSSRPGTGSMS-LDRALQGSRPGTSRPPTTLGRQVRLGTASMQSIDASV-------FIDVNRLDLKRYAARPAIAKALVDYLLYHEHNPRKALELAAEATVAADYKDWWWKARLGKCYYQLGLFRDAEKQFESSLRCQEMVLTVLELGKVYLRLDQPNTALARYERARGAFPGDTQLLVASARVHDMLNDVDKSVALYKDVLALDASSVEAVACLASNLFY 343
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: K3X8B7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8B7_GLOUD) HSP 1 Score: 233 bits (595), Expect = 6.260e-69 Identity = 127/239 (53.14%), Postives = 167/239 (69.87%), Query Frame = 1
Query: 1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT-----VLSLDASNVEATASLAANHFY 702
LR + STGRPL+GF R T +RP +G + + L G+RP TSRP T++GR++RLGTA M + G DSG FI+ ++LD +RYA RPA+A L DYLLY E NPR+AL+L AE T ++ +WWWK RLGKCYY+LG+ R+AE+Q +SSL +Q+MV T LEL KVY RLD PNTALD +A + P + +LL +AR HD+LN+ + A VL LD+SN+EA A LA+N FY
Sbjct: 287 LRPMTSTGRPLSGFARPGTSSRPGTGSMS-IDRALQGSRPGTSRPPTTLGRQVRLGTASMQS-----GADSGM-FIDVNRLDFKRYAARPAIAKVLVDYLLYHEHNPRKALELAAEATVAVDYKDWWWKTRLGKCYYQLGLFRDAEKQFESSLRNQEMVITVLELCKVYLRLDQPNTALDRYDRARDKFPGDIHLLLGSARVHDMLNNVDRAVEIYKDVLQLDSSNIEAIACLASNFFY 518
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A7S3G6M4_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G6M4_9EUKA) HSP 1 Score: 220 bits (560), Expect = 2.500e-65 Identity = 121/239 (50.63%), Postives = 155/239 (64.85%), Query Frame = 1
Query: 1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT-----VLSLDASNVEATASLAANHFY 702
+R ++ GRP +GF R T +RP Q L L G+RP TSRP+TS GR +RLGTA M + + G PFI KLDLR+YA R LA L DY++Y E NP++AL+L A TT + +WWWKARLGKCYY+LG+ REAE+Q S+L DMV T LEL KVY +LD PNTALD +A+E HP + ++LL +R +D LND + VL DAS++EA A LAA+HFY
Sbjct: 111 VRPMSGAGRPTSGFVRPGTSSRP---QTNSLEGALAGSRPGTSRPVTSSGRFVRLGTASMLS-------EPGGPFINVEKLDLRKYAARTPLAKVLCDYIIYHEHNPKKALELCAHATTSSNYQDWWWKARLGKCYYQLGLYREAEKQFLSALKTADMVITTLELCKVYIKLDQPNTALDNYTRAAERHPGDTQLLLGISRIYDQLNDVTRSIQFYKRVLYFDASSIEAVACLAAHHFY 339
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A812UTE9_9DINO (Ttc8 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UTE9_9DINO) HSP 1 Score: 220 bits (560), Expect = 8.860e-65 Identity = 123/240 (51.25%), Postives = 158/240 (65.83%), Query Frame = 1
Query: 1 LRVVNSTGRPLTGFQRSRTVTRPVSGQAA-DLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLNDGENAT-----VLSLDASNVEATASLAANHFY 702
+R V+++GRPLTGF R T RP S A D+ T + G R PLTSMGR IRLGTA M + G F+ LDL++YA+RPA+A AL DY+LY RNPR+AL+L +E T +F +WWWKARLGK YY+LG+LR+AE+Q KS+L D++M++THLEL KVY RLD PN+ALD +A+E E IL+ ART+D+LN VL DA N EA A LA++HFY
Sbjct: 167 VRPVSASGRPLTGFARPGT-NRPTSSSAGRDVTTAMQGNRXXXXXPLTSMGRLIRLGTASMV-------NQDGGEFVRLESLDLQKYAQRPAIAKALCDYMLYYARNPRKALELASEATQAVDFKDWWWKARLGKAYYQLGLLRDAEKQFKSALKDEEMITTHLELCKVYLRLDQPNSALDQYGRAAEKFVGETHILIGLARTYDMLNALLRGVSFYKKVLQYDAVNSEAIACLASHHFY 398
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Match: A0A067BK52_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BK52_SAPPC) HSP 1 Score: 215 bits (547), Expect = 1.410e-63 Identity = 111/207 (53.62%), Postives = 148/207 (71.50%), Query Frame = 1
Query: 4 RVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGREIRLGTAGMAAASAAMGDDSGAPFIESSKLDLRRYARRPALAMALTDYLLYVERNPRRALDLTAEVTTLKEFNNWWWKARLGKCYYKLGMLREAERQLKSSLVDQDMVSTHLELVKVYTRLDLPNTALDVLMKASESHPRECRILLATARTHDLLND 624
R ++++GRPL+GF R T +RP +G + D L GARP TSRP TS+GR++RLGTA M + GD G FI +LD++RYA RP +A AL DYLLY + NP++AL+L AE T ++ +WWWKARLGKCYY+LG+LR+AE+Q +SSL Q+MV T+LEL KVY +LD PNTAL+ +ASE P + +L+ AR HD+LND
Sbjct: 91 RPMSASGRPLSGFARPGTGSRPGTGLSLDQA--LQGARPGTSRPPTSLGRQVRLGTASMQS----QGD--GGAFISPDRLDMKRYAARPPIAKALVDYLLYHDHNPKKALELAAEATVAADYKDWWWKARLGKCYYQLGLLRDAEKQFESSLRSQEMVVTYLELCKVYLKLDQPNTALEYYRRASEKFPGDVHVLVGMARIHDMLND 289 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51517.12415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51517.12415.1 >prot_H-elongata_contig51517.12415.1 ID=prot_H-elongata_contig51517.12415.1|Name=mRNA_H-elongata_contig51517.12415.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp LRVVNSTGRPLTGFQRSRTVTRPVSGQAADLMTTLGGARPATSRPLTSMGback to top mRNA from alignment at H-elongata_contig51517:288..3717- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51517.12415.1 ID=mRNA_H-elongata_contig51517.12415.1|Name=mRNA_H-elongata_contig51517.12415.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3430bp|location=Sequence derived from alignment at H-elongata_contig51517:288..3717- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51517:288..3717- >mRNA_H-elongata_contig51517.12415.1 ID=mRNA_H-elongata_contig51517.12415.1|Name=mRNA_H-elongata_contig51517.12415.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig51517:288..3717- (Himanthalia elongata Himel1 dioecious)back to top |