mRNA_H-elongata_contig51504.12413.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51504.12413.1
Unique NamemRNA_H-elongata_contig51504.12413.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51504.12413.1 vs. uniprot
Match: D8LIU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU9_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.850e-21
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:    2 LVTLATVAGATAAPKVVGSLGNVGAQLGVLLMQLFFAVTGAQGSFAVVMGTAPSLFVFSVVQV 190
            LVTL TVAGATAAP  VG LG+VGAQLG+LLMQLFFAVTGAQGS AVVMGTAPSL VFS+VQ+
Sbjct:  416 LVTLVTVAGATAAPSWVGRLGSVGAQLGILLMQLFFAVTGAQGSLAVVMGTAPSLLVFSLVQI 478
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BLAST of mRNA_H-elongata_contig51504.12413.1 vs. uniprot
Match: A0A6H5L155_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L155_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.930e-21
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:    2 LVTLATVAGATAAPKVVGSLGNVGAQLGVLLMQLFFAVTGAQGSFAVVMGTAPSLFVFSVVQV 190
            L+TL TVAGATAAP  VG LG+VGAQLG+LLMQLFFAVTGAQGS AVVMGTAPSL VFS+VQ+
Sbjct:  473 LLTLVTVAGATAAPSWVGRLGSVGAQLGILLMQLFFAVTGAQGSLAVVMGTAPSLLVFSLVQI 535
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BLAST of mRNA_H-elongata_contig51504.12413.1 vs. uniprot
Match: A0A835YW30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW30_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.270e-13
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:    2 LVTLATVAGATAAPKVVGSLGNVGAQLGVLLMQLFFAVTGAQGSFAVVMGTAPSLFVFSVVQV 190
            + +L TVA A+A PKV+  LG  GAQ+GVL MQLFFAVTGA GS AVVM TAP+L  FS +Q+
Sbjct:  246 ITSLLTVAAASAFPKVLAPLGVAGAQVGVLFMQLFFAVTGASGSIAVVMRTAPTLLAFSAIQI 308
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BLAST of mRNA_H-elongata_contig51504.12413.1 vs. uniprot
Match: A0A7S3XZE0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZE0_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 5.610e-9
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2 
Query:    2 LVTLATVAGATAAPKVVGSLGNVGAQLGVLLMQLFFAVTGAQGSFAVVMGTAPSLFVFSVVQV 190
            +V++ATVA A+ AP +   L   G ++GV LMQLFFA TGA G  A V+ TAP +FVFSVVQV
Sbjct:  331 IVSVATVAAASIAPGLFRPLTLSGGKIGVFLMQLFFAATGANGHIAKVVETAPMVFVFSVVQV 393
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BLAST of mRNA_H-elongata_contig51504.12413.1 vs. uniprot
Match: A0A6U6CH16_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6CH16_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.970e-8
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 2 
Query:    2 LVTLATVAGATAAPKVVGSLGNVGAQLGVLLMQLFFAVTGAQGSFAVVMGTAPSLFVFSVVQV 190
            L ++ TVA AT  P     L   G+ +G+L MQ+FFA +GA GS A+V+ TAPSLF+FS +Q+
Sbjct:  365 LTSVLTVAAATTFPGFFSCLRETGSTIGILFMQMFFAASGAAGSIALVLKTAPSLFIFSALQI 427
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BLAST of mRNA_H-elongata_contig51504.12413.1 vs. uniprot
Match: A0A1Y5IKS4_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IKS4_OSTTA)

HSP 1 Score: 57.8 bits (138), Expect = 3.650e-8
Identity = 34/63 (53.97%), Postives = 41/63 (65.08%), Query Frame = 2 
Query:    2 LVTLATVAGATAAPKVVGSLGNVGAQLGVLLMQLFFAVTGAQGSFAVVMGTAPSLFVFSVVQV 190
            ++TL TV  ATA PK +G L   G  L  L+MQ FF   GA GS A ++GTAPSLF FS +QV
Sbjct:  289 IITLITVILATALPKRLGRLAGSGEALATLVMQAFFVAVGASGSIAHMIGTAPSLFFFSCLQV 351
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BLAST of mRNA_H-elongata_contig51504.12413.1 vs. uniprot
Match: A0A6P4DK47_ARADU (uncharacterized protein LOC107491120 isoform X1 n=7 Tax=Arachis TaxID=3817 RepID=A0A6P4DK47_ARADU)

HSP 1 Score: 57.0 bits (136), Expect = 6.830e-8
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 2 
Query:   29 ATAAPKVVGSLGNVGAQLGVLLMQLFFAVTGAQGSFAVVMGTAPSLFVFSVVQV 190
            AT  PK +GSLG  G  L ++LMQ+FFAV GA GS   V+ TAPS+F+F++VQV
Sbjct:  315 ATLLPKQIGSLGPAGHTLALVLMQVFFAVVGASGSIWNVIKTAPSIFLFALVQV 368
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BLAST of mRNA_H-elongata_contig51504.12413.1 vs. uniprot
Match: A0A061SLX0_9CHLO (Duf819-domain-containing protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SLX0_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 1.200e-7
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:    2 LVTLATVAGATAAPKVVGSLGNVGAQLGVLLMQLFFAVTGAQGSFAVVMGTAPSLFVFSVVQV 190
            ++TL +V  ATAAP+V+  L   G  L  ++MQ+FFA  GA GS A V+  AP+LFVF+++QV
Sbjct:   34 IITLLSVCLATAAPRVLAPLVASGEGLAAIIMQIFFATVGANGSIASVVTKAPALFVFALIQV 96
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BLAST of mRNA_H-elongata_contig51504.12413.1 vs. uniprot
Match: A4RVI9_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RVI9_OSTLU)

HSP 1 Score: 55.5 bits (132), Expect = 2.380e-7
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 2 
Query:    2 LVTLATVAGATAAPKVVGSLGNVGAQLGVLLMQLFFAVTGAQGSFAVVMGTAPSLFVFSVVQV 190
            ++TL TV  ATA P+ +G+L   G  L  L+MQ FF   GA GS   ++ TAPSLFVFS +QV
Sbjct:  276 IITLITVVLATAIPRRLGALAGSGEALATLVMQAFFVAVGASGSITHMLTTAPSLFVFSCLQV 338
[Close]
BLAST of mRNA_H-elongata_contig51504.12413.1 vs. uniprot
Match: UPI0010A35703 (uncharacterized protein LOC114730275 n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A35703)

HSP 1 Score: 55.5 bits (132), Expect = 2.390e-7
Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = 2 
Query:   29 ATAAPKVVGSLGNVGAQLGVLLMQLFFAVTGAQGSFAVVMGTAPSLFVFSVVQV 190
            AT  P+ +GSLG  G  + +LL+Q+FFAVTGA G+   V+ TAPS+F+F+++QV
Sbjct:  323 ATVLPRQMGSLGPAGHTIALLLIQVFFAVTGASGNVWTVIKTAPSIFMFALIQV 376
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51504.12413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIU9_ECTSI1.850e-2184.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L155_9PHAE4.930e-2182.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YW30_9STRA2.270e-1363.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XZE0_HETAK5.610e-957.14Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6U6CH16_9STRA1.970e-849.21Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Y5IKS4_OSTTA3.650e-853.97Uncharacterized protein n=2 Tax=Ostreococcus tauri... [more]
A0A6P4DK47_ARADU6.830e-857.41uncharacterized protein LOC107491120 isoform X1 n=... [more]
A0A061SLX0_9CHLO1.200e-749.21Duf819-domain-containing protein (Fragment) n=1 Ta... [more]
A4RVI9_OSTLU2.380e-750.79Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
UPI0010A357032.390e-751.85uncharacterized protein LOC114730275 n=2 Tax=Proso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51504contigH-elongata_contig51504:426..2018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size200
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930842.3966937-CDS-H-elongata_contig51504:425..5041622930842.3966937-CDS-H-elongata_contig51504:425..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51504 426..504 +
1691679593.7123024-CDS-H-elongata_contig51504:425..5041691679593.7123024-CDS-H-elongata_contig51504:425..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51504 426..504 +
1622930842.409736-CDS-H-elongata_contig51504:1899..20181622930842.409736-CDS-H-elongata_contig51504:1899..2018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51504 1900..2018 +
1691679593.7216065-CDS-H-elongata_contig51504:1899..20181691679593.7216065-CDS-H-elongata_contig51504:1899..2018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51504 1900..2018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51504.12413.1prot_H-elongata_contig51504.12413.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51504 426..2018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51504.12413.1

>prot_H-elongata_contig51504.12413.1 ID=prot_H-elongata_contig51504.12413.1|Name=mRNA_H-elongata_contig51504.12413.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
PGDPGYRGGGNGSPEGRRKPRERRRPARRSVDAALLRGNWSPGQLCRRHG
HRAFAIRFLRRAGII*
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mRNA from alignment at H-elongata_contig51504:426..2018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51504.12413.1 ID=mRNA_H-elongata_contig51504.12413.1|Name=mRNA_H-elongata_contig51504.12413.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1593bp|location=Sequence derived from alignment at H-elongata_contig51504:426..2018+ (Himanthalia elongata Himel1 dioecious)
CCTGGTGACCCTGGCTACCGTGGCGGGGGCAACGGCAGCCCCGAAGGTCG
TCGGAAGCCTCGGGAACGTCGGCGCCCAGGTTGCTTTTGATCACCGATTG
GCTGGCTGAATGATTGACTCATTGATTGGCTGGCTGAATGATTGACTGAC
TGATTGACTGGCTGAATGATTGACTGACCGATTGGCTGGCTGAATGATTG
AATCACCGAACGACTGGCTGAATGATTGACTCAATGATTGACTCATTGAT
TGGCTGACTGAATGAGGGACTGATGAAATGACTGAATGAGGGACTGATAA
TACTTCTCTCAAATGAAGCAATATCAATATTTGACTGATCATACTGATCG
AATGATGACTGAATGATTGACTGACTATACGGGGAAAGGGGGAAATTATT
ATGTTTCCCTGCTCAGCTGAGCACTACTAAAGCAGAAGGCAACCAAATCC
GATTGATGACCAACAGCAACAACAACAGCAACTGTAGAACTACTATTCAA
GCAAAGAAAGCATATTTATGGTGACGGTTAACGGTGAGATTCGATACTCT
CTTTAACGCATGGATACTCGTTGGATTGTTTATTGGGTTTTTTTTTCTGT
AGCGGTCATAGTCCAAAACGGGGAGAACGGGACTGTCTGGATACCTTTGG
AGGAGTCGAGCTGAAGGTTCGATAACGTCTATAGATAGGTCGGCAGCGTT
GCAGCAGCAGCTCGGATCGGTACAGTAGTAACCTACGGTACTCTAGCACT
TTGAATGGCCTACCCCCATCGGCGGCAATTTTTATTTATTTTAAAAATAC
TACTGCTACTACTAATTTGCTACTAGTATCTGTTATTTTCATTTTTAAAA
ATATACAGTATTTAATAGTATATATTTTCTTGTTTACAGGTTTTTACAGT
TTTGAACCTTTTCCTCGAGTATATGTTTATTAATATACTAATGTTTGTGT
TACGCATATCTGGTATTCGACCACCTGCCGTGAAAAATTATCAAAAATTA
TTACCCTATCATTTTGACTTAGGTTTTGTTACTCGAGATTTTAAAATGTG
GAACTGTTGACGCTTACGCTTTTTAGATATTGTATAGCCGAGTTTAATTT
CACCTTGTTTCTGATTTATGTATAAATATATATACTCTATAGTCTAAATG
TATGATTTTTGTTTGTTTTTCATGAACTGTACAGTATTTTATTTTATTTT
GTTTTAGATACCCCTGGTATATTTATTTCAAAAACCTTGAACTCATTTCA
ACCCTCCGAAAATCCACACTTTCTTAGCGCCGTGAGAGTTGCATTATTTT
TATTTAAAAGACTTCAGGCTTCATTCTAACTCTCCGAACATCCACACCTT
CTTGTCACCGTAAGTGCAATCCAGGGAACCAACTATCAGAAAGCAGGAAT
AAGCATTATTTTATTTAAATATTTTATTTTATTTGTCTTGTTTTCTCTCT
TCTTTTTTGTTTTGTCTCTCGCAGCTAGGCGTTCTGTTGATGCAGCTCTT
CTTCGCGGTAACTGGAGCCCAGGGCAGCTTTGCCGTCGTCATGGGCACCG
CGCCTTCGCTATTCGTTTTCTCCGTCGTGCAGGTATAATATAG
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Coding sequence (CDS) from alignment at H-elongata_contig51504:426..2018+

>mRNA_H-elongata_contig51504.12413.1 ID=mRNA_H-elongata_contig51504.12413.1|Name=mRNA_H-elongata_contig51504.12413.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig51504:426..2018+ (Himanthalia elongata Himel1 dioecious)
CCTGGTGACCCTGGCTACCGTGGCGGGGGCAACGGCAGCCCCGAAGGTCG
TCGGAAGCCTCGGGAACGTCGGCGCCCAGCCTGGTGACCCTGGCTACCGT
GGCGGGGGCAACGGCAGCCCCGAAGGTCGTCGGAAGCCTCGGGAACGTCG
GCGCCCAGCTAGGCGTTCTGTTGATGCAGCTCTTCTTCGCGGTAACTGGA
GCCCAGGGCAGCTTTGCCGTCGTCATGGGCACCGCGCCTTCGCTATTCGT
TTTCTCCGTCGTGCAGGTATAATATAGCTAGGCGTTCTGTTGATGCAGCT
CTTCTTCGCGGTAACTGGAGCCCAGGGCAGCTTTGCCGTCGTCATGGGCA
CCGCGCCTTCGCTATTCGTTTTCTCCGTCGTGCAGGTATAATATAG
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