mRNA_H-elongata_contig51396.12402.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51396.12402.1
Unique NamemRNA_H-elongata_contig51396.12402.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51396.12402.1 vs. uniprot
Match: D7G3C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C7_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.780e-12
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 QMCVEFAKVEQKLGEIDRARLVLTHGSQFADPRRASSFWQ 120
            +MC+ FA VEQKLGEIDRAR V T+GSQFADPRRA  +WQ
Sbjct:  120 EMCLSFAAVEQKLGEIDRARAVWTYGSQFADPRRAEPYWQ 159
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BLAST of mRNA_H-elongata_contig51396.12402.1 vs. uniprot
Match: A0A836CMJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.760e-11
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 QMCVEFAKVEQKLGEIDRARLVLTHGSQFADPRRASSFW 117
            ++C++FA++EQ LGEIDRAR VL HGSQFADPRR  S+W
Sbjct:   17 EICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYW 55
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BLAST of mRNA_H-elongata_contig51396.12402.1 vs. uniprot
Match: K8YQA2_NANGC (Pre-mRNA-splicing factor SYF1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQA2_NANGC)

HSP 1 Score: 62.0 bits (149), Expect = 3.970e-10
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 MCVEFAKVEQKLGEIDRARLVLTHGSQFADPRRASSFWQ 120
            MC++FA++E+KLGEIDRAR V THG+ FADPRR   +W+
Sbjct:  768 MCIQFAELERKLGEIDRARAVYTHGANFADPRRDPGYWK 806
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BLAST of mRNA_H-elongata_contig51396.12402.1 vs. uniprot
Match: A0A1Y2GLH5_9FUNG (Pre-mRNA splicing factor Syf-1 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GLH5_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 3.970e-10
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 MCVEFAKVEQKLGEIDRARLVLTHGSQFADPRRASSFWQ 120
            MC+ FA++E+KLGEIDRAR +  HGSQF+DPR AS +WQ
Sbjct:  750 MCMRFAEMERKLGEIDRARGIFAHGSQFSDPRIASDYWQ 788
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BLAST of mRNA_H-elongata_contig51396.12402.1 vs. uniprot
Match: A0A6P8IXF7_ACTTE (pre-mRNA-splicing factor SYF1-like n=2 Tax=Actiniaria TaxID=6103 RepID=A0A6P8IXF7_ACTTE)

HSP 1 Score: 61.6 bits (148), Expect = 5.430e-10
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 QMCVEFAKVEQKLGEIDRARLVLTHGSQFADPRRASSFWQ 120
            QMC+ FA++E+KLGEIDRAR +  H SQ +DPRR S FW+
Sbjct:  663 QMCIRFAELERKLGEIDRARAIYMHASQMSDPRRTSEFWK 702
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BLAST of mRNA_H-elongata_contig51396.12402.1 vs. uniprot
Match: A0A0N1NXS9_9EURO (Pre-mRNA-splicing factor syf1 n=1 Tax=Phialophora attinorum TaxID=1664694 RepID=A0A0N1NXS9_9EURO)

HSP 1 Score: 61.6 bits (148), Expect = 5.430e-10
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 QMCVEFAKVEQKLGEIDRARLVLTHGSQFADPRRASSFWQ 120
            +MCV+FA++E++LGE+DRAR +  HGSQFADPR   SFW+
Sbjct:  670 EMCVKFAEMERRLGEVDRARAIYAHGSQFADPRVDMSFWR 709
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BLAST of mRNA_H-elongata_contig51396.12402.1 vs. uniprot
Match: A0A7S3XMF3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMF3_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 5.510e-10
Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 MCVEFAKVEQKLGEIDRARLVLTHGSQFADPRRASSFWQ 120
            MC++FA +E+KLGE+DRAR + THGSQFADPR+   +W+
Sbjct:   29 MCLQFADLEKKLGEVDRARALFTHGSQFADPRKDPGYWK 67
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BLAST of mRNA_H-elongata_contig51396.12402.1 vs. uniprot
Match: A0A7S2V324_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V324_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.160e-10
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 QMCVEFAKVEQKLGEIDRARLVLTHGSQFADPRRASSFWQ 120
            Q C  +A++E+KLGEIDRAR +L HGSQFADPRR  ++W+
Sbjct:   28 QACEAYAQLERKLGEIDRARALLVHGSQFADPRRHPAYWK 67
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BLAST of mRNA_H-elongata_contig51396.12402.1 vs. uniprot
Match: A0A6A6GME1_9PEZI (Uncharacterized protein n=2 Tax=Elsinoe TaxID=40996 RepID=A0A6A6GME1_9PEZI)

HSP 1 Score: 61.2 bits (147), Expect = 7.420e-10
Identity = 23/40 (57.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 QMCVEFAKVEQKLGEIDRARLVLTHGSQFADPRRASSFWQ 120
            +MC+ FA++E++LGE+DRAR +  HGSQFADPRR +++W+
Sbjct:  699 EMCLRFAEMERRLGEVDRARAIYGHGSQFADPRREAAYWK 738
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BLAST of mRNA_H-elongata_contig51396.12402.1 vs. uniprot
Match: A0A2N5W1G2_9BASI (Uncharacterized protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5W1G2_9BASI)

HSP 1 Score: 60.8 bits (146), Expect = 1.010e-9
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 QMCVEFAKVEQKLGEIDRARLVLTHGSQFADPRRASSFWQ 120
            +MC+ FA +EQKLGEIDRAR +  H SQF DPR A  FW+
Sbjct:  915 EMCLRFASLEQKLGEIDRARAIYAHSSQFCDPRTAPQFWE 954
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51396.12402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C7_ECTSI4.780e-1275.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMJ5_9STRA2.760e-1169.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8YQA2_NANGC3.970e-1064.10Pre-mRNA-splicing factor SYF1 n=3 Tax=Monodopsidac... [more]
A0A1Y2GLH5_9FUNG3.970e-1066.67Pre-mRNA splicing factor Syf-1 n=1 Tax=Lobosporang... [more]
A0A6P8IXF7_ACTTE5.430e-1062.50pre-mRNA-splicing factor SYF1-like n=2 Tax=Actinia... [more]
A0A0N1NXS9_9EURO5.430e-1062.50Pre-mRNA-splicing factor syf1 n=1 Tax=Phialophora ... [more]
A0A7S3XMF3_HETAK5.510e-1061.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V324_9STRA6.160e-1062.50Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6A6GME1_9PEZI7.420e-1057.50Uncharacterized protein n=2 Tax=Elsinoe TaxID=4099... [more]
A0A2N5W1G2_9BASI1.010e-962.50Uncharacterized protein n=2 Tax=Puccinia coronata ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51396contigH-elongata_contig51396:3242..3361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue3.8e-09
Seed eggNOG ortholog2880.D7G3C7
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0065003,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.generation of catalytic spliceosome for first transesterification step
EggNOG OGsKOG2047@1,KOG2047@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size117
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930841.3528068-CDS-H-elongata_contig51396:3241..33581622930841.3528068-CDS-H-elongata_contig51396:3241..3358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51396 3242..3358 -
1691679593.2635088-CDS-H-elongata_contig51396:3241..33581691679593.2635088-CDS-H-elongata_contig51396:3241..3358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51396 3242..3358 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930841.3670282-UTR-H-elongata_contig51396:3358..33611622930841.3670282-UTR-H-elongata_contig51396:3358..3361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51396 3359..3361 -
1691679593.2741742-UTR-H-elongata_contig51396:3358..33611691679593.2741742-UTR-H-elongata_contig51396:3358..3361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51396 3359..3361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51396.12402.1prot_H-elongata_contig51396.12402.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51396 3242..3358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51396.12402.1

>prot_H-elongata_contig51396.12402.1 ID=prot_H-elongata_contig51396.12402.1|Name=mRNA_H-elongata_contig51396.12402.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MCVEFAKVEQKLGEIDRARLVLTHGSQFADPRRASSFWQ
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mRNA from alignment at H-elongata_contig51396:3242..3361-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51396.12402.1 ID=mRNA_H-elongata_contig51396.12402.1|Name=mRNA_H-elongata_contig51396.12402.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig51396:3242..3361- (Himanthalia elongata Himel1 dioecious)
CAGATGTGCGTCGAGTTTGCGAAGGTGGAGCAGAAGCTGGGTGAGATCGA
TCGAGCCCGCTTGGTGCTAACCCATGGCAGCCAGTTTGCCGACCCGCGGA
GGGCGTCGTCATTCTGGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig51396:3242..3361-

>mRNA_H-elongata_contig51396.12402.1 ID=mRNA_H-elongata_contig51396.12402.1|Name=mRNA_H-elongata_contig51396.12402.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig51396:3242..3361- (Himanthalia elongata Himel1 dioecious)
ATGTGCGTCGAGTTTGCGAAGGTGGAGCAGAAGCTGGGTGAGATCGATCG
AGCCCGCTTGGTGCTAACCCATGGCAGCCAGTTTGCCGACCCGCGGAGGG
CGTCGTCATTCTGGCAGATGTGCGTCGAGTTTGCGAAGGTGGAGCAGAAG
CTGGGTGAGATCGATCGAGCCCGCTTGGTGCTAACCCATGGCAGCCAGTT
TGCCGACCCGCGGAGGGCGTCGTCATTCTGGCAG
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