mRNA_H-elongata_contig5138.12398.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5138.12398.1
Unique NamemRNA_H-elongata_contig5138.12398.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: D8LRS3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRS3_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 1.310e-121
Identity = 199/269 (73.98%), Postives = 228/269 (84.76%), Query Frame = 1
Query:    4 NARRQKLEKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKDQMKAAKDAKKKEELWKLAMTSPAAKASNVVALGRGDTPRNNRK 810
            N RR+KLEKMGEEILDLWQQL IGKDE+DVF  SVDGMG QTL+AGETEL RLR+LK E+MG+L+   RAKIRELWDEIG SE ER+AFKP+LVTEEGFTD+LLQQHTQEAD L  KFETM+HILEKIEERE LVEQR + ETSTKDPSR   KG+ +ERR+Q++ LQ+ELE EKR+KNRLP LT SL+K IPQWE AQ + FLYKGERY+D +QR+EDE+ ALKDQ+KAAK A KKEEL K AM SPA K+ N VALGRG+TPR+ RK
Sbjct:  258 NTRREKLEKMGEEILDLWQQLDIGKDEQDVFAKSVDGMGLQTLEAGETELNRLRKLKLEKMGELVLASRAKIRELWDEIGYSETERLAFKPMLVTEEGFTDELLQQHTQEADKLATKFETMKHILEKIEERETLVEQRIEYETSTKDPSRLRPKGSQEERREQRRRLQEELETEKRIKNRLPMLTISLSKTIPQWENAQDSVFLYKGERYLDTLQRSEDEYLALKDQIKAAKAATKKEELRKHAMASPAPKSLNSVALGRGETPRSTRK 526          
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A1Z5JIC7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIC7_FISSO)

HSP 1 Score: 138 bits (347), Expect = 1.620e-33
Identity = 90/239 (37.66%), Postives = 140/239 (58.58%), Query Frame = 1
Query:    7 ARRQKLEKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVT-EEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKDQMKAAKDAKKKEE 720
            AR+ +LE+MG  I  LW++LHI ++++  F  SV G+G  T++ G  EL RL+ LK + +G LI+  R +I ELW++I      R  F P  +  E+ F D+LL+QH + A +L ++ E M+ IL  IE REA+V +RF+ E   KDP R   +G    R+     L +E +  +R+K  LP LT  L + + +W+      F Y+GE+Y+D ++R E+E+   K +    K  KK+EE
Sbjct:  325 ARKVQLEEMGGAIAMLWEKLHIPEEDQIAFTESVQGLGLDTIEKGRRELQRLQILKSQMLGKLIQEARDRIVELWEQIDAPREYRDQFTPFKIQLEDCFDDKLLEQHEEYAYNLYSRLEQMKPILRIIERREAIVRERFEYEELQKDPDRLQQRGAAMTRQ-----LMEEEKMARRIKRELPRLTELLVEKLIEWKDLNGEDFQYRGEKYLDLMERQEEEWNQYKAEELQRKLKKKQEE 558          
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A1E7FEK5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEK5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.960e-28
Identity = 86/255 (33.73%), Postives = 141/255 (55.29%), Query Frame = 1
Query:   10 RRQKLEKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVTEEG-FTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKD-----QMKAAKDAKKKEELWKLAMTSPAAK 756
            R+  L++MGE+I  LW+QL I ++++  F  SV G+G  T++ G+ EL RL+ LK + +G LI   R  I+ELW E   +  +R +F+P  V +E  + D+LL QH +    L+ + E MR I + IE RE ++ +R + E   KD  R   +G         K L +E +  +R+K  LP LT  L + + +W+ +    F Y+GE Y++A+ R ++E+   K+     ++K  +D +  EE   L  + PA K
Sbjct:  376 RKDLLQEMGEQIAMLWEQLRIPQEDQQAFTDSVKGLGMDTIEKGKEELKRLKSLKGQMLGKLINEARENIQELWKETNGTHEQRKSFEPFTVRDEDMYDDELLDQHEEYIKILSHRLEKMRPINKLIERREDILRERMEYEELQKDSDRLKQRGAAMA-----KQLMEEEKMARRIKKDLPKLTKVLYEKLKEWKDSNGEDFQYRGEIYIEAMFRQDEEWLEYKNSEIQLKLKKKQDHQTFEENRHLGKSIPATK 625          
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: I2CQQ7_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQQ7_NANGC)

HSP 1 Score: 113 bits (283), Expect = 3.830e-27
Identity = 76/199 (38.19%), Postives = 115/199 (57.79%), Query Frame = 1
Query:   10 RRQKLEKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDP-SRFMAKGN--VQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVA 597
            R  +L+ +G++I  LW +L +   +++ F ASVDG+G  TL+AGE EL RL  LK+E++G LI   RA+I  LW+E+G    ER  F  + V  EG+ D+LLQ H +E   L  + E +R IL+ I +RE  + +R + E   K+  +R   +G   ++E  + +KM       +K VK  LP LT  L K + +WE A
Sbjct:    7 RADRLKTLGDQIAGLWDRLKVPDQDREAFSASVDGLGPDTLEAGERELRRLHSLKREKLGSLIAESRAQITGLWEEMGVGLVEREGFGALRVGPEGYCDELLQAHEEEIQCLTDRLEVLRPILKLIWKREEFLRERTEMEELQKNSKARLTDRGGKRIEELMRIEKM-------DKHVKKDLPILTERLRKRLLEWEKA 198          
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A024TNN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNN6_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.840e-25
Identity = 76/224 (33.93%), Postives = 128/224 (57.14%), Query Frame = 1
Query:   52 LWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSE-AERMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKDQMKAAKDAKKKEE 720
            LW +L +  +E+D F  +  G+ +  L+  E ELARL++LK+ R+GDL+   R  IRELW  +  ++ A    F  + V     TD+LL  H  E   L+A+    + +L+ IE+RE +++ R   E S K P+R + +    + R   ++L++E + + ++K+ LP LT  L   +P WE   ++PFL +GERY+D I R + E++  K+  +  KD  K+E+
Sbjct:  228 LWDRLKVSPNERDEFLDACQGISADNLRQAEDELARLQQLKRARLGDLLLDVRGHIRELWSVLEVNDLAAATMFPAMQVATTDATDELLVIHEDELKRLDAQATARKALLKYIEKREEIIDDRSQYEASLKGPTRLIGR----QTRDTGRLLREE-KLQAKIKHDLPKLTKLLLDKLPAWEGEFASPFLVRGERYLDTIARVDAEYSKQKELDRLEKDRLKREK 446          
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A0B7NC82_9FUNG (Uncharacterized protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NC82_9FUNG)

HSP 1 Score: 101 bits (251), Expect = 1.510e-20
Identity = 69/207 (33.33%), Postives = 113/207 (54.59%), Query Frame = 1
Query:   25 EKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAI 645
            E++   +  LW +LH+ + E DVF  +  G+ S+ L   E ELA+L +LK+ER+GD I+  + ++  LWD +  +E +R  F+P    +   TD  L+ +  E   L  + E  ++ILE IE+   L ++  + E +T DP+R   KGN    R   ++L++E    KR+   LP +T  L   + ++E  +S PFL  G+ Y D I
Sbjct:  253 EEIATSLKHLWNRLHVNQQECDVFLMANRGLTSKDLDKFENELAKLNQLKQERIGDFIQTAKEELASLWDRLYFNEKQRAQFQPDQCGDH-VTDVALEAYENEISRLQLELEDSKYILELIEKHMKLKKEIEEFEATTSDPNRLFGKGN----RDPGRLLREE-RFRKRISRELPKVTKELEGALLEYEALKSHPFLVYGKPYFDVI 453          
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A835YL47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL47_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.370e-19
Identity = 75/215 (34.88%), Postives = 108/215 (50.23%), Query Frame = 1
Query:  184 MGDLIRCKRAKIRELWDEIGCSEAE-RMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRF-----------------------MAKGNVQERRQQ------------QKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKDQMKAAKDAKKKEE 720
            M  L+  +R ++  LW E+G ++ + R  F P  +     +D  LQ H +E   L    E+MR +LE+I ERE L  +R +  T  KDP+R                        + +G ++ R +             QK L  ELE EKRVK RLP LT  L K + QWE A    F + G+RY+D I+R+E+E+ A+KD +K AK+A KK E
Sbjct:    1 MSRLVVRERERLAALWLELGVTDEQGRAGFTPYTIDAGTCSDTELQAHVEEVKRLTLLLESMRPLLERIREREELCLERIEELTVEKDPNRLXXXXXXXXXXXXXXXXXXXKELCLERGYIRTRVENHPSRVKTRDPTLQKQLAAELEMEKRVKKRLPKLTEHLKKALAQWEDAHGGAFEWHGKRYLDRIERSEEEYNAVKDSVKLAKEAIKKLE 215          
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: W4GQS5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GQS5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.240e-17
Identity = 72/225 (32.00%), Postives = 119/225 (52.89%), Query Frame = 1
Query:   52 LWQQLHIGKD-EKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGC-SEAERMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKDQMKAAKDAKKKEE 720
            LW +L++  + + DV +A   G+ +  L+  E EL RL+ LK+ ++G+L+   R +I  LW  +   + A   +F  + V     T++LL  H  E   L+AK    R +L+ IE+RE ++ +R   E S  DP R +  G V   R     L +E + + ++K+ LP  T  L   +P WE    TPF+ +GERY+D I R + ++   K+  +  KD  K+E+
Sbjct:  229 LWDRLNVSPNVQGDVLDAC-RGISADALRHAEDELTRLQHLKRTKLGELLLDVRRQIAALWSSLEVDATAAASSFPAMQVPVVDATEELLALHESELKRLDAKATARRALLKYIEKREEIIGERSQYEASLHDPDRLI--GRVATAR-----LLREEKLQAKIKHDLPKWTKLLLDKLPAWEQEYCTPFVLRGERYLDTIARVDADYIKQKELDRMEKDRLKREK 445          
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A4D9D0U8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0U8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.190e-17
Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   10 RRQKLEKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVTEEGFTDQLLQQHTQEADSLN 348
            R  +L+ +G++I  LW +L +   +++ F ASVDG+G  TL+AGE EL RL+ LK+E++G LI   RA+I  LW+E+     ER  F  + V  EG+ D+LLQ H +E  + N
Sbjct:  276 RADRLKTLGDQIAGLWDRLKVPDQDREAFSASVDGLGPDTLEAGERELGRLQSLKREKLGSLIAESRAQITGLWEEMAVGLVEREGFGALRVGPEGYCDELLQAHEEETSATN 388          
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A418EVC5_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EVC5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.580e-16
Identity = 73/234 (31.20%), Postives = 119/234 (50.85%), Query Frame = 1
Query:   22 LEKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGC-SEAERMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKDQMKAAKDAKKKEE 720
            +E +   + DL Q       + DV +A   G+ +  L+  E EL RL+ LK+ ++G+L+   R +I  LW  +   + A   +F  + V     T++LL  H  E   L+AK    R +L+ IE+RE ++ +R   E S  DP R +  G V   R     L +E + + ++K+ LP  T  L   +P WE    TPF+ +GERY+D I R + ++   K+  +  KD  K+E+
Sbjct:  300 IELISTRVADLIQLKVSPNVQGDVLDAC-RGISADDLRHAEDELTRLQHLKRAKLGELLLDVRRQIAALWSSLEVDATAAASSFPAMQVPVVDATEELLALHESELKRLDAKATARRALLKYIEKREEIIGERSQYEASLHDPDRLI--GRVATAR-----LLREEKLQAKIKHDLPKWTKLLLDKLPAWEQEYCTPFVLRGERYLDTIARVDADYIKQKELDRMEKDRLKREK 525          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LRS3_ECTSI1.310e-12173.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Z5JIC7_FISSO1.620e-3337.66Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A1E7FEK5_9STRA2.960e-2833.73Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
I2CQQ7_NANGC3.830e-2738.19Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A024TNN6_9STRA3.840e-2533.93Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A0B7NC82_9FUNG1.510e-2033.33Uncharacterized protein n=1 Tax=Parasitella parasi... [more]
A0A835YL47_9STRA1.370e-1934.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W4GQS5_9STRA1.240e-1732.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A4D9D0U8_9STRA3.190e-1742.48Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A418EVC5_9STRA5.580e-1631.20Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5138contigH-elongata_contig5138:110..2669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.8
Seed ortholog evalue1.1e-96
Seed eggNOG ortholog2880.D8LRS3
KEGG koko:K16732
EggNOG free text desc.microtubule binding
EggNOG OGsKOG4302@1,KOG4302@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons7
Model size810
Cds size780
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5138.12398.1prot_H-elongata_contig5138.12398.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5138 140..2669 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930840.7915046-UTR-H-elongata_contig5138:109..1391622930840.7915046-UTR-H-elongata_contig5138:109..139Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5138 110..139 +
1691679592.992067-UTR-H-elongata_contig5138:109..1391691679592.992067-UTR-H-elongata_contig5138:109..139Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5138 110..139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930840.812922-CDS-H-elongata_contig5138:139..1961622930840.812922-CDS-H-elongata_contig5138:139..196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 140..196 +
1691679593.0028663-CDS-H-elongata_contig5138:139..1961691679593.0028663-CDS-H-elongata_contig5138:139..196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 140..196 +
1622930840.828817-CDS-H-elongata_contig5138:458..5941622930840.828817-CDS-H-elongata_contig5138:458..594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 459..594 +
1691679593.0121665-CDS-H-elongata_contig5138:458..5941691679593.0121665-CDS-H-elongata_contig5138:458..594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 459..594 +
1622930840.8496354-CDS-H-elongata_contig5138:819..9771622930840.8496354-CDS-H-elongata_contig5138:819..977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 820..977 +
1691679593.0300026-CDS-H-elongata_contig5138:819..9771691679593.0300026-CDS-H-elongata_contig5138:819..977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 820..977 +
1622930840.8673122-CDS-H-elongata_contig5138:1132..12511622930840.8673122-CDS-H-elongata_contig5138:1132..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 1133..1251 +
1691679593.042285-CDS-H-elongata_contig5138:1132..12511691679593.042285-CDS-H-elongata_contig5138:1132..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 1133..1251 +
1622930840.8818939-CDS-H-elongata_contig5138:1418..15471622930840.8818939-CDS-H-elongata_contig5138:1418..1547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 1419..1547 +
1691679593.055775-CDS-H-elongata_contig5138:1418..15471691679593.055775-CDS-H-elongata_contig5138:1418..1547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 1419..1547 +
1622930840.8967578-CDS-H-elongata_contig5138:1793..18781622930840.8967578-CDS-H-elongata_contig5138:1793..1878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 1794..1878 +
1691679593.0687964-CDS-H-elongata_contig5138:1793..18781691679593.0687964-CDS-H-elongata_contig5138:1793..1878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 1794..1878 +
1622930840.9115255-CDS-H-elongata_contig5138:2573..26691622930840.9115255-CDS-H-elongata_contig5138:2573..2669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 2574..2669 +
1691679593.078647-CDS-H-elongata_contig5138:2573..26691691679593.078647-CDS-H-elongata_contig5138:2573..2669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5138 2574..2669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5138.12398.1

>prot_H-elongata_contig5138.12398.1 ID=prot_H-elongata_contig5138.12398.1|Name=mRNA_H-elongata_contig5138.12398.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
MGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKE
RMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVTEEGFTDQLLQQHTQ
EADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQE
RRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGER
YMDAIQRTEDEFAALKDQMKAAKDAKKKEELWKLAMTSPAAKASNVVALG
RGDTPRNNRK
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mRNA from alignment at H-elongata_contig5138:110..2669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5138.12398.1 ID=mRNA_H-elongata_contig5138.12398.1|Name=mRNA_H-elongata_contig5138.12398.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2560bp|location=Sequence derived from alignment at H-elongata_contig5138:110..2669+ (Himanthalia elongata Himel1 dioecious)
CAGAATGCTCGCCGTCAGAAGCTGGAAAAAATGGGCGAAGAAATATTAGA CCTTTGGCAACAGCTGCACATCGGAAAGGACGAGAAGGTGAGACAGTTTT ACACGAAGATGTCAAGATGTCGCCAGCGTGTTCGACTTGCGACGAGATCG CCGATGGTCTAGGTGAAAAAGTGTGCCTTGACATCGAACAGTGTAACAGC CACTTGCTTTCTTGGACGATCTTGACATCTTGTAGCAGGTTACAAACGAC ACAGTGATAACTGGTTACAAACTAGCATTCGATCAAAATTATTGAACAGT GAAACAAAAGTCGTGCTGAATAATCGCATTTCTGATCAAACCTGAAAAGG ATGTGTTCGAAGCGAGTGTGGACGGAATGGGATCACAGACGCTCAAGGCT GGTGAAACAGAACTTGCTCGCCTTCGAGAGCTCAAGAAAGAGAGGATGGG AGATCTTATAAGGTGTAAGAGAGCCAAGATCCGAGGTGAGATACGCGCGT TTTACTCCCTTTAAAATGTCAGACAGACAGACAGCGGTGACCTTACCTAC CAGGGAACTGCCGACACCCGACACGAACAAATTTATGGGATTGTATCATC TCAACACTTAACTGGCAGTTCAAAAAATCACCCGTTTCTTGTTATCGTAC AGTACCGCTTTTTGATATGTTATCGTATGTTACCGTATGTTACCTTGTCA TACCTGGTAGAACTCTGGGATGAGATTGGCTGCTCGGAAGCTGAAAGGAT GGCGTTTAAGCCTATTCTCGTCACGGAGGAGGGCTTTACGGACCAACTCC TTCAGCAGCATACGCAAGAGGCCGATAGCCTGAACGCCAAGTTTGAGACT ATGAGGCACATACTAGAGGTATCGCAGTGCAAATGATTTTTCAAGAAGGT CTTATTTGCTTCTCCACGCACTCGCGAGTGGTCATAGAAATAGGGCGCTC CCGCTACATGCGCAGGAAGGCTGGACTTCACCTACAAGGCTTAGCCCCGC CCCGTCGTTCACCATTCCCACAGAAAATCGAAGAGCGTGAAGCCCTGGTA GAACAAAGGTTCGACAACGAGACGAGCACGAAAGACCCAAGCCGATTCAT GGCCAAGGGAAACGTCCAAGAACGACGGCAGCAGCAAAAAATGTGGGAAT GGGTATATATAATGGTATTTCGATCGTCTCAGTACAGGGAATATTCCCTT TAAACAGTATAACGAGGGCGTATTCGAGGATGAATCCCCGGGGGTCGAAG GGGTCACAAAAACGATCTTGAGGTCCAAGTCTGCGCATTGCTGTGATTCC TCTGCGCAGGTTGCAGCAAGAGCTGGAAGCGGAGAAGCGTGTCAAAAACC GCCTCCCGGCGCTCACGAGTAGCCTCGCAAAAATCATTCCTCAGTGGGAG GTCGCCCAGTCTACACCGTTCCTTTACAAGGGTGAAAGGTAATGTGTTCT ATGGCAGAATCTTCGTCGGCGGTTCATCTACTTGACCCCTTCTTCCGGAG AATATCAAAGCACGCTTTCACTCTTTCACTCACTAAATGTCTTCCACGGC GGCCCCACTTTATTTTTACTTCCTTTTTTAGTATGAAGGGTATTTATTGT TCTATGTCGGTTTCGTGCACTCAATTGATTCTTCTCAAAATGATTATCCA AAACTGGTGATCCTCTTGATTTCTAACACACCAGGTACATGGATGCTATT CAGCGAACGGAAGATGAGTTTGCGGCTCTTAAGGACCAGATGAAGGCCGC AAAGGACGCAAAAAAAAAGGTGAAGTATTGTGAACAGTTCAGTTATTGGC ACTTGGCTCCATTATATATAATATAATAATATATAATAATCGCCTCCGAT ACTCTGACTGTATCGCACATGCCCACTCGGGAAAGAGAGGCGTGTTACCT TAATAGGCTGCACCCATTACTCAAGCTACCTTGAGGACTATTGACTCAGT TCCTGGCGGACTCTCGGTGGTACATGCATCGATATGCAATTGCGCGACCT GATGATATCAGGATTAGCCCGATGGCGGCTTGACGGTAGACTTGGTCGCC GTAGCAGAAAATGAGAGGATCGCGGGAGTACGCACCAGATGCAGGCTGAC GCAAAATGGGACTGCCGAACCCGTTTCGCGAGACCAAATTCTGAGGCGCG AAAGGAAACAGGGGAAAAATTAACAATTTGTATTAAACCGCGCAAACCGG TAACACACGTAAGGAGGCGTCATGCCGGTTTGCGAATACTCCCCCTTATC CTTATCGGGACCTATTCCCCCTTATCGGGAGCTATCCTTGTTCAGCTGAC CACAAGTAGAATACAACCAAATCAGGTTGAGTTCATCATACTCTATATTG CTATATTGCTATATCTTCTTCAATTTTTCTAGATATACAAGGTGTTTAAT GCAGTGTCACTCCATATATATATATTATTCACGAGGAATTCAATTTCCCT ACCTTATGTATCAGGAAGAACTTTGGAAGCTTGCGATGACCAGCCCTGCG GCCAAAGCGTCAAATGTGGTGGCTCTCGGAAGAGGAGACACCCCTCGCAA CAACAGAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig5138:110..2669+

>mRNA_H-elongata_contig5138.12398.1 ID=mRNA_H-elongata_contig5138.12398.1|Name=mRNA_H-elongata_contig5138.12398.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig5138:110..2669+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGAAGAAATATTAGACCTTTGGCAACAGCTGCACATCGGAAAGGA
CGAGAAGATGGGCGAAGAAATATTAGACCTTTGGCAACAGCTGCACATCG
GAAAGGACGAGAAGGATGTGTTCGAAGCGAGTGTGGACGGAATGGGATCA
CAGACGCTCAAGGCTGGTGAAACAGAACTTGCTCGCCTTCGAGAGCTCAA
GAAAGAGAGGATGGGAGATCTTATAAGGTGTAAGAGAGCCAAGATCCGAG
GATGTGTTCGAAGCGAGTGTGGACGGAATGGGATCACAGACGCTCAAGGC
TGGTGAAACAGAACTTGCTCGCCTTCGAGAGCTCAAGAAAGAGAGGATGG
GAGATCTTATAAGGTGTAAGAGAGCCAAGATCCGAGAACTCTGGGATGAG
ATTGGCTGCTCGGAAGCTGAAAGGATGGCGTTTAAGCCTATTCTCGTCAC
GGAGGAGGGCTTTACGGACCAACTCCTTCAGCAGCATACGCAAGAGGCCG
ATAGCCTGAACGCCAAGTTTGAGACTATGAGGCACATACTAGAGAACTCT
GGGATGAGATTGGCTGCTCGGAAGCTGAAAGGATGGCGTTTAAGCCTATT
CTCGTCACGGAGGAGGGCTTTACGGACCAACTCCTTCAGCAGCATACGCA
AGAGGCCGATAGCCTGAACGCCAAGTTTGAGACTATGAGGCACATACTAG
AGAAAATCGAAGAGCGTGAAGCCCTGGTAGAACAAAGGTTCGACAACGAG
ACGAGCACGAAAGACCCAAGCCGATTCATGGCCAAGGGAAACGTCCAAGA
ACGACGGCAGCAGCAAAAAATAAAATCGAAGAGCGTGAAGCCCTGGTAGA
ACAAAGGTTCGACAACGAGACGAGCACGAAAGACCCAAGCCGATTCATGG
CCAAGGGAAACGTCCAAGAACGACGGCAGCAGCAAAAAATGTTGCAGCAA
GAGCTGGAAGCGGAGAAGCGTGTCAAAAACCGCCTCCCGGCGCTCACGAG
TAGCCTCGCAAAAATCATTCCTCAGTGGGAGGTCGCCCAGTCTACACCGT
TCCTTTACAAGGGTGAAAGGTTGCAGCAAGAGCTGGAAGCGGAGAAGCGT
GTCAAAAACCGCCTCCCGGCGCTCACGAGTAGCCTCGCAAAAATCATTCC
TCAGTGGGAGGTCGCCCAGTCTACACCGTTCCTTTACAAGGGTGAAAGGT
ACATGGATGCTATTCAGCGAACGGAAGATGAGTTTGCGGCTCTTAAGGAC
CAGATGAAGGCCGCAAAGGACGCAAAAAAAAAGGTACATGGATGCTATTC
AGCGAACGGAAGATGAGTTTGCGGCTCTTAAGGACCAGATGAAGGCCGCA
AAGGACGCAAAAAAAAAGGAAGAACTTTGGAAGCTTGCGATGACCAGCCC
TGCGGCCAAAGCGTCAAATGTGGTGGCTCTCGGAAGAGGAGACACCCCTC
GCAACAACAGAAAAGAAGAACTTTGGAAGCTTGCGATGACCAGCCCTGCG
GCCAAAGCGTCAAATGTGGTGGCTCTCGGAAGAGGAGACACCCCTCGCAA
CAACAGAAAA
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