mRNA_H-elongata_contig51372.12396.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: D7FX15_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX15_ECTSI) HSP 1 Score: 348 bits (893), Expect = 8.250e-111 Identity = 256/488 (52.46%), Postives = 283/488 (57.99%), Query Frame = 1
Query: 31 VFIRGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPPCPMTPPTAYKGGLSN--------GVGGPTRR-----------------GPAPP---PQSSP------HTCRSVVQHATAVPGIGGEIGLGGNGRWAG-GAP--QGSPLQI--------GADGQPRXXXXXXXXXXXXXXXXXXXXXXXXSNERVFGPATPGS------CAVPG----MTRPLSASSGVFTLPASSK------SESATVLNLE--------RFGGGMPS----------GDPHHSLPKQQQQQQSWSGSNASSCRSTPVSGSYGGRSYWIKGRGSPLATPETLTNTPPVELSP 1257
VFIRGADRR LQNLRV++R LVYAIGLSPNFAQ +TLKQ EYFGQYGEI KLVINHH+GV DDPRYGSASAYITFRR+EDAWAA+CSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNP+CLYLHELGDE DRFTKDEVQLGLARHGSSFAFKEEVLGDR + P+P NPV PPPC M P + G GVGG + GP PP P S P H CR+ G E RWAG GAP GSPL + G+D +PR XXXXXXXXXXXXXXXXXXX N+ GP P VP P + F L A++ S + V L FGG G+P++ P Q Q + G GSYG + W KGR SPLATPETL+NTPP+ELSP
Sbjct: 59 VFIRGADRRALQNLRVVRRNLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKDEVQLGLARHGSSFAFKEEVLGDR--------GNTAAPRPTNPVFPPPCAMLPAPYRREGAGKPQRDGGNMGVGGRQQHQXXXDCEIYRHGNTGGNGPPPPKALPMSLPPSPQVCHPCRTRGGGCCGGAFPGAEAA-----RWAGSGAPLTPGSPLPLDGGGLSLSGSDERPRRRXXXXXXXXXXXXXXXXXXXGH-GNDGCGGPTAPAQQQYGHHAGVPNEYGEQMTPAGQQASHFELTAAAAARAGLGSPTGDVFRLPDHVFDRPFEFGGXXXXXXXXXXXXXXGNPYYPAP---QPAQGFGG------------GSYGSSAGWGKGRNSPLATPETLSNTPPLELSP 517
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A6H5JE06_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE06_9PHAE) HSP 1 Score: 332 bits (851), Expect = 7.340e-103 Identity = 251/509 (49.31%), Postives = 275/509 (54.03%), Query Frame = 1
Query: 22 QPSVFIRGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTK---DEVQLGLARHGSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPPCPMTPPTAYK---GGLSNGVGGP-----------------TRRGPAPPPQS--------SPHTCRSVVQHAT-------AVPGIGGEIGLGGNGRWAGG-AP--QGSPLQI--------GADGQPRXXXXXXXXXXXXXXXXXXXXXXXX--------------------------SNE------------RVFGPATPGSCAVPGMTRPLSASSGVFTLPASSKSESATVLNLERFGGGMPSG----------DPHHSLPKQQQQQQSWSGSNASSCRSTPVSGSYGGRSYWIKGRGSPLATPETLTNTPPVELSP 1257
Q VFIRGADRR LQNLRV++RTLVYAIGLSPNFAQ +TLKQ EYFGQYGEI KLVINHH+GV DDPRYGSASAYITFRR+EDAWAA+CSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNP+CLYLHELGDE DRFTK DEVQLGLARHGSSFAFKEEVLGDR G + R +P NPV PPPCPM PP Y+ GG GG T G APPP SPH C V GG RWAGG AP GSPL + G+D +PR XXXXXXXXXX SNE F + AVPG S VF LP + A + E GGG G +P++ P Q Q + G G+YG + W KGRGS LATPET +NT P+ LSP
Sbjct: 55 QKGVFIRGADRRALQNLRVVRRTLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKAGSDEVQLGLARHGSSFAFKEEVLGDR-GDTAAR-------RPTNPVFPPPCPM-PPAPYRRAGGGKPQRDGGNMGGRYQHRREGELCRHNTAGGNAPPPPKAQPTLLPPSPHDCHPCRTRGXXXXXXXDCVDCFGGAFPGAEAARWAGGGAPLTPGSPLPLDGGSLSLSGSDERPRRRXXXXXXXXXXGATGTPGLVCHGHDACGGGXXXXXXXXXXXXYGHPAGVSNEYGGQRTAAGQQASHFELTAAAARAVPG-----SPPQDVFRLP-----DHAFDCSFEFGGGGRGGGRADDLATVDGNPYYPTP---QPAQDFDG------------GAYGSSAGWGKGRGSSLATPETQSNTSPLNLSP 529
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A836CMF8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF8_9STRA) HSP 1 Score: 189 bits (479), Expect = 1.660e-55 Identity = 89/128 (69.53%), Postives = 100/128 (78.12%), Query Frame = 1
Query: 70 LRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEV 453
LRVIQR LVY IGL P A YFGQYG I K+V+NHH GV+ DDPR+GSASAY+TF KEDAW+AI +VDGF L GR +RASFGTTKYCNSFLR L CNN +CLYLHELGDE DRFTK+E+
Sbjct: 1 LRVIQRNLVYVIGLGPGIT-AGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A7S4D5P1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5P1_HETAK) HSP 1 Score: 198 bits (503), Expect = 4.370e-54 Identity = 106/208 (50.96%), Postives = 137/208 (65.87%), Query Frame = 1
Query: 43 GADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPPCPMTPPTAYKGGLSNGVGGPTRRGPA 666
D+R L N+RVIQR LVY IGL + A L++ E+FGQYG I K+V+NH+ G P DPR+GSASAYITF K+DA +AI +VDG++ GR IRASFGTTKYCN+FLRNLPC NPECLYLHELGD DR+T++E+Q G ++ + + V+G+ GG + G + N V PPP P G ++ G P +GPA
Sbjct: 105 SVDKRSLHNVRVIQRNLVYVIGLPLSIASEEDLRRGEFFGQYGRIHKVVVNHNHGAPPKDPRHGSASAYITFCHKDDARSAIQAVDGYQWDGRLIRASFGTTKYCNNFLRNLPCTNPECLYLHELGDSEDRYTREEIQTGASKTDAGPFGTQTVVGE--GGPSGTGKKVA-----NSVFPPPV-FDAPKRLPGSVN---GAPGAKGPA 301
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A7S2GN38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN38_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.340e-48 Identity = 99/189 (52.38%), Postives = 126/189 (66.67%), Query Frame = 1
Query: 40 RGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSAS----AYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARH--GSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPP 588
R DR+ LQN+RV+QR LVY IG+SP+ A TL++ EYFGQ+G+I K+V+N + DPR SAS AYITF KEDA A I +VDGF + GR +RASFGTTKYCNSFLRNL C NP+CLYLHELG+E D FTK+++Q G S+ +V+ TG P G+ + NP++PPP
Sbjct: 144 RVPDRKNLQNIRVVQRNLVYVIGISPSIASEETLRRGEYFGQFGKIVKVVVNRNHSGGSGDPRNASASLSASAYITFAHKEDAKACIQAVDGFWMDGRNVRASFGTTKYCNSFLRNLSCTNPDCLYLHELGEEEDSFTKEQIQSGQNSQFKNSTEVGTTDVVVRVTGNGGPSGTGRRV---TNPIMPPP 329
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A482RNX1_9ARCH (RRM domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNX1_9ARCH) HSP 1 Score: 160 bits (406), Expect = 9.170e-44 Identity = 78/165 (47.27%), Postives = 115/165 (69.70%), Query Frame = 1
Query: 49 DRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSSFAFKEEVLGDRTGGSNPRGS 543
DR+ L N RV+QR LVY GL + TL++ EYFGQYG+++K+++ H+ +P + + SAY+TF KEDA A I +++GF + G +RASFGTTKYCN+++R+LPC+NP+C+YLHELG+E DRFTK+E+QLG ++ S + ++ TG P G+
Sbjct: 37 DRKHLHNYRVVQRNLVYVTGLPASCGAEDTLRRPEYFGQYGKVSKVIV--HRNAAPP---HHTVSAYVTFCHKEDARACIQALEGFVVEGHVLRASFGTTKYCNNYIRHLPCSNPDCVYLHELGEEEDRFTKEEIQLGSSKLVLSPGRDQTLV---TGSGGPSGT 193
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: H3G5S5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5S5_PHYRM) HSP 1 Score: 162 bits (409), Expect = 9.640e-44 Identity = 81/141 (57.45%), Postives = 100/141 (70.92%), Query Frame = 1
Query: 49 DRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLAR 471
+R+ LQN+RV+QR LVY IGL FA+ L+ E FGQYG+I K V+N +S D +ASAYITF KEDA I ++DG+ L G +RASFGTTKYCN FLRN+ CNNP+CLYLHELGD+ D FTK+E+Q G R
Sbjct: 92 NRKSLQNVRVMQRNLVYVIGLPVRFAEEDILRSNECFGQYGKIVKAVVNKSH-LSADRAN-ATASAYITFANKEDALCCIVAIDGYYLDGSMLRASFGTTKYCNFFLRNMQCNNPDCLYLHELGDDDDSFTKEEMQSGTRR 230
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A835YKN6_9STRA (RING/Ubox like zinc-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN6_9STRA) HSP 1 Score: 160 bits (406), Expect = 1.720e-43 Identity = 77/129 (59.69%), Postives = 99/129 (76.74%), Query Frame = 1
Query: 40 RGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDE 426
R A + L +L ++QR LVY +GL P A +++ E+FGQ+G+I K+V N +QG+ P D R+GSASAYI+F +EDA A I SVDGF L GRT++A+FGTTKYCNSFLR+LPCNN EC+YLHELGDE
Sbjct: 84 RLARQHALLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDE 212
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A7S1C198_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C198_9STRA) HSP 1 Score: 171 bits (432), Expect = 9.760e-43 Identity = 90/186 (48.39%), Postives = 117/186 (62.90%), Query Frame = 1
Query: 49 DRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSSFAFKEEVLGD-----RTGGSNPRGS-RSCLPQPKNPVLPPP 588
DR L N+RVI+R LVYA+GL P+ A L++ E+FGQYG I K+V+N DPR SASAY+TF KEDA A I ++DGF L GR IRAS+GT+KYC++F++N+ CNNPEC YLH +G+ D FTK E+Q G G K + G R+ P S ++C+ NPV PPP
Sbjct: 138 DRSQLANMRVIRRNLVYAVGLPPSSASDDMLRRSEHFGQYGRIGKVVLNRSHIGGGGDPRRASASAYVTFVNKEDALACILALDGFYLDGRNIRASYGTSKYCSAFIKNVRCNNPECTYLHHMGEAEDTFTKQEIQAGYVTSGRDVLAKLQAGGGSCIRKRSXXXXPSSSGKACV----NPVFPPP 319
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A7S2Y5J5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5J5_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.280e-42 Identity = 92/222 (41.44%), Postives = 127/222 (57.21%), Query Frame = 1
Query: 49 DRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSS-FAFKEEVLGD-------------RTGGSNPRG-----SRSCLPQPK--NPVLPPPCPMTPPTAYKGGLSNGVGGPT 651
DR +L N+RVI+R LVYA+GL P L++ +YFGQYG+I K+V+N Q S DPR + SAY+TF KED A I ++DGF + GR +RAS+GT+KYC++F++N+ CNNP+C YLHE+G D FTK E+Q G G A +++++ + R GG P G S P P+ P P P + PPT + G G T
Sbjct: 118 DRTLLANMRVIRRNLVYAVGLPPTVGSEDNLRRADYFGQYGKIAKIVLNRTQATS-GDPRRATCSAYVTFVHKEDTLACILAMDGFHMDGRNVRASYGTSKYCSAFIKNVRCNNPDCTYLHEMGAAEDTFTKQEIQAGYVTSGRDVLARQQQIVAEQLKQAGSGPAPRKRIGGGGPSGTGKASSHPIFPAPEFDEPTKPSPTLVPPPTGIARASTAGTGNTT 338 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51372.12396.1 >prot_H-elongata_contig51372.12396.1 ID=prot_H-elongata_contig51372.12396.1|Name=mRNA_H-elongata_contig51372.12396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=428bp QFQQQQQQPSVFIRGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLback to top mRNA from alignment at H-elongata_contig51372:1086..3515- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51372.12396.1 ID=mRNA_H-elongata_contig51372.12396.1|Name=mRNA_H-elongata_contig51372.12396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2430bp|location=Sequence derived from alignment at H-elongata_contig51372:1086..3515- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51372:1086..3515- >mRNA_H-elongata_contig51372.12396.1 ID=mRNA_H-elongata_contig51372.12396.1|Name=mRNA_H-elongata_contig51372.12396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2568bp|location=Sequence derived from alignment at H-elongata_contig51372:1086..3515- (Himanthalia elongata Himel1 dioecious)back to top |