mRNA_H-elongata_contig51341.12393.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51341.12393.1
Unique NamemRNA_H-elongata_contig51341.12393.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51341.12393.1 vs. uniprot
Match: D8LLG7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG7_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.380e-9
Identity = 52/138 (37.68%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    4 QNLAKAENEKHEAALAKEEHRRLFAEHKSNQALLRDASKLKLLEERRERAHQIMENERRREKERREKQIDDDKTLAACKEKLRQEQEVQLKKRKEIAESLRLMQRENVAKLAEKKHQKVLEAEKDRRLMQEYRERLDR 417
            Q LA++E E+ EA   +E+ RR   EH++ Q  L+++S+ K LEE+  RA QI+ NERRRE+ER+ +++++ + L  CK KL                                + QK+ +AE+D+RLM+EYRERLDR
Sbjct:   63 QKLARSEKERREADARREQQRRALVEHQALQEELKESSRRKTLEEKCVRATQILGNERRRERERQNRKVEEARILEDCKRKLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKQKIADAEEDKRLMKEYRERLDR 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51341.12393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLG7_ECTSI2.380e-937.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51341contigH-elongata_contig51341:399..1547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_004540.1
Exons3
Model size420
Cds size420
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51341.12393.1prot_H-elongata_contig51341.12393.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51341 399..1547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930840.3298528-CDS-H-elongata_contig51341:398..5481622930840.3298528-CDS-H-elongata_contig51341:398..548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51341 399..548 -
1691679592.7758305-CDS-H-elongata_contig51341:398..5481691679592.7758305-CDS-H-elongata_contig51341:398..548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51341 399..548 -
1622930840.3495104-CDS-H-elongata_contig51341:1015..11531622930840.3495104-CDS-H-elongata_contig51341:1015..1153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51341 1016..1153 -
1691679592.7845554-CDS-H-elongata_contig51341:1015..11531691679592.7845554-CDS-H-elongata_contig51341:1015..1153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51341 1016..1153 -
1622930840.3760104-CDS-H-elongata_contig51341:1415..15471622930840.3760104-CDS-H-elongata_contig51341:1415..1547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51341 1416..1547 -
1691679592.7964587-CDS-H-elongata_contig51341:1415..15471691679592.7964587-CDS-H-elongata_contig51341:1415..1547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51341 1416..1547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51341.12393.1

>prot_H-elongata_contig51341.12393.1 ID=prot_H-elongata_contig51341.12393.1|Name=mRNA_H-elongata_contig51341.12393.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
RQNLAKAENEKHEAALAKEEHRRLFAEHKSNQALLRDASKLKLLEERRER
AHQIMENERRREKERREKQIDDDKTLAACKEKLRQEQEVQLKKRKEIAES
LRLMQRENVAKLAEKKHQKVLEAEKDRRLMQEYRERLDR*
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mRNA from alignment at H-elongata_contig51341:399..1547-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51341.12393.1 ID=mRNA_H-elongata_contig51341.12393.1|Name=mRNA_H-elongata_contig51341.12393.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1149bp|location=Sequence derived from alignment at H-elongata_contig51341:399..1547- (Himanthalia elongata Himel1 dioecious)
CGGCAAAATTTAGCAAAAGCGGAGAACGAAAAACACGAGGCAGCCCTTGC
AAAGGAAGAGCACCGGCGACTGTTCGCAGAGCACAAATCTAATCAGGCTT
TGCTGAGGGATGCCTCGAAATTAAAGCTTCTGGTGCGTGTTTTTTGCATC
TGGGCAGCGAAAAAAACAATGGTTGTGCTCATGAATAAGTACATGAATCT
CTCAGCCACCACAATAAGCTCTACAAAATACCCGAGATGCTAACTCCTAA
AATAATCGCAAAGCCGATTTAACTCCATGTAGACTCTGCTCCATAGACGA
GTCTTCTTCCACATTCCACGGGGGAAAGTCTTGGGATCACTTTGATCAAG
TGTGCGCCCTCGCGTGTGTTCTGTGCCTTTATAAACGCGGGCAGGAAGAA
AGACGCGAACGCGCGCATCAGATCATGGAGAACGAGAGGCGGCGGGAAAA
GGAGCGCCGCGAGAAGCAGATCGACGATGATAAGACCCTGGCGGCGTGCA
AGGAAAAGCTGCGCCAGGAGCAGGAAGTGCAGGTTCTCTCTATTTTCCTT
GCTCTACAAACGCAGCCAAGGGAACAAATGTTCATACATTTTCCATCGCA
TGCGTATTTCAATAATCAGCTGGAGGTACTTGATCAAAATCAATTAATCA
AGTCAATCAAAACTTATCTTCCCGAAATTGAAAAGCAACCGCTCGATCGA
AGGCATGTGGGGCTGGTATATTATAGTTCACCTTCGAAAGGGGTGATATA
AATGTCTCACCCCCCACCCTCCCCTTCCTACATATAGCCCAAAGTCACTA
CTTGATACAGGTAATAAGTGCTGCCACATGGGGTACGCACTGTAGATATA
CGTTTTCGGCTGGCTGACGATTCATGCAATCGATATCGCTAATCGATATA
GCTAATCAAGCGTGAAAACCCGACGCACGGACTTCGCCGAACCTCACCCG
TGCTTTCGTTCCGGTACCTTCTACGCCACAACGTCCTTCGCCGCCGAAGC
TCAAGAAGCGGAAGGAGATAGCAGAATCGCTGCGGTTAATGCAACGCGAA
AATGTTGCCAAGCTCGCGGAAAAGAAACACCAGAAGGTGCTTGAGGCCGA
AAAAGACAGGCGCCTTATGCAGGAGTATCGAGAGAGGCTAGATAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig51341:399..1547-

>mRNA_H-elongata_contig51341.12393.1 ID=mRNA_H-elongata_contig51341.12393.1|Name=mRNA_H-elongata_contig51341.12393.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig51341:399..1547- (Himanthalia elongata Himel1 dioecious)
CGGCAAAATTTAGCAAAAGCGGAGAACGAAAAACACGAGGCAGCCCTTGC
AAAGGAAGAGCACCGGCGACTGTTCGCAGAGCACAAATCTAATCAGGCTT
TGCTGAGGGATGCCTCGAAATTAAAGCTTCTGCGGCAAAATTTAGCAAAA
GCGGAGAACGAAAAACACGAGGCAGCCCTTGCAAAGGAAGAGCACCGGCG
ACTGTTCGCAGAGCACAAATCTAATCAGGCTTTGCTGAGGGATGCCTCGA
AATTAAAGCTTCTGGAAGAAAGACGCGAACGCGCGCATCAGATCATGGAG
AACGAGAGGCGGCGGGAAAAGGAGCGCCGCGAGAAGCAGATCGACGATGA
TAAGACCCTGGCGGCGTGCAAGGAAAAGCTGCGCCAGGAGCAGGAAGTGC
AGGAAGAAAGACGCGAACGCGCGCATCAGATCATGGAGAACGAGAGGCGG
CGGGAAAAGGAGCGCCGCGAGAAGCAGATCGACGATGATAAGACCCTGGC
GGCGTGCAAGGAAAAGCTGCGCCAGGAGCAGGAAGTGCAGCTCAAGAAGC
GGAAGGAGATAGCAGAATCGCTGCGGTTAATGCAACGCGAAAATGTTGCC
AAGCTCGCGGAAAAGAAACACCAGAAGGTGCTTGAGGCCGAAAAAGACAG
GCGCCTTATGCAGGAGTATCGAGAGAGGCTAGATAGGTGACTCAAGAAGC
GGAAGGAGATAGCAGAATCGCTGCGGTTAATGCAACGCGAAAATGTTGCC
AAGCTCGCGGAAAAGAAACACCAGAAGGTGCTTGAGGCCGAAAAAGACAG
GCGCCTTATGCAGGAGTATCGAGAGAGGCTAGATAGGTGA
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