mRNA_H-elongata_contig51294.12386.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51294.12386.1
Unique NamemRNA_H-elongata_contig51294.12386.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51294.12386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51294contigH-elongata_contig51294:301..1263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.504257-CDS-H-elongata_contig51294:300..4421622930839.504257-CDS-H-elongata_contig51294:300..442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51294 301..442 +
1691679592.3895278-CDS-H-elongata_contig51294:300..4421691679592.3895278-CDS-H-elongata_contig51294:300..442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51294 301..442 +
1622930839.5281641-CDS-H-elongata_contig51294:1153..12631622930839.5281641-CDS-H-elongata_contig51294:1153..1263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51294 1154..1263 +
1691679592.399107-CDS-H-elongata_contig51294:1153..12631691679592.399107-CDS-H-elongata_contig51294:1153..1263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51294 1154..1263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51294.12386.1prot_H-elongata_contig51294.12386.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51294 301..1263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51294.12386.1

>prot_H-elongata_contig51294.12386.1 ID=prot_H-elongata_contig51294.12386.1|Name=mRNA_H-elongata_contig51294.12386.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
RFQEGQELTKHLRLPSISASRKLFNNQSCSGERLIRQEYPSVVTRTEGDS
FQRDTSPFQILWRPFSFLPVGEQHGAGLSARRG*
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mRNA from alignment at H-elongata_contig51294:301..1263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51294.12386.1 ID=mRNA_H-elongata_contig51294.12386.1|Name=mRNA_H-elongata_contig51294.12386.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=963bp|location=Sequence derived from alignment at H-elongata_contig51294:301..1263+ (Himanthalia elongata Himel1 dioecious)
CGGTTCCAAGAGGGCCAAGAACTAACGAAACACCTCCGCCTACCCTCAAT
ATCAGCATCAAGGAAACTGTTCAATAACCAATCCTGCTCTGGGGAACGTC
TGATTCGTCAAGAGTACCCTTCAGTAGTAACAAGGACAGAAGGTGAGCTG
AAAGCTAGTAATGTATATGAACCTGACGATAGTCGGTCCCCTGGATTTCA
CCGAGCCTTATGTAAAGGAGTTGTGGTACTCCGAGGGTTTGAATGACTTC
ATATTTAAAGAGAAAAACGAGAGTGAGAAAGCGTACATCGCTCTCCCAGC
TCTAGATCGCCTCGTCACAACCACACAACTAACTCAGAATAACTAGAGTA
CAAATCGGGACATTCCCATTCGGCACTAGGTATATCACCGATCACCGATT
AGTAATGATGTGTCTGTCCATAACATCAAGAGTATTTACGTCGAATCAAT
TTCTGGGAACATTTTTTAAGTCGTCTGACTGATCAAACCATATATTGTGT
GCGAGGGGTGGAACGCGGAACTACCCCCATGATCCGAGGGCCGAAGCCCA
AATGGGTAGGGTGACTCGTGTACTGAGTTGAGCTAGAAGGCAATACAGGG
GCTTTTTTACCGGTTGACGGGCTGCCACCCTCTTGAGGAGGACGGAGGTC
TGGCGTGCCTCTCACCTTCAAGAAAACACTTGAACGGGATCCCAAGGTTG
ATCCCGAGGGTGGAAGGTGACTGGCATTGTTTACCCCTGGTTTTCTGGGG
AAAAAAAAAAAAAAAAAAACTACCCCCATGATGTGTAGAATTATCCCTGG
CGGCTCACAAGTGGTAGATTCCAACGAGACACTTCCCCCTTGGCGGCTCA
CAGGTGATAGCTTCCAACGAGACACTTCCCCGTTCCAGATACTCTGGAGA
CCATTTAGCTTTCTTCCTGTTGGGGAACAGCACGGAGCTGGGCTCAGTGC
CAGAAGGGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig51294:301..1263+

>mRNA_H-elongata_contig51294.12386.1 ID=mRNA_H-elongata_contig51294.12386.1|Name=mRNA_H-elongata_contig51294.12386.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig51294:301..1263+ (Himanthalia elongata Himel1 dioecious)
CGGTTCCAAGAGGGCCAAGAACTAACGAAACACCTCCGCCTACCCTCAAT
ATCAGCATCAAGGAAACTGTTCAATAACCAATCCTGCTCTGGGGAACGTC
TGATTCGTCAAGAGTACCCTTCAGTAGTAACAAGGACAGAAGCGGTTCCA
AGAGGGCCAAGAACTAACGAAACACCTCCGCCTACCCTCAATATCAGCAT
CAAGGAAACTGTTCAATAACCAATCCTGCTCTGGGGAACGTCTGATTCGT
CAAGAGTACCCTTCAGTAGTAACAAGGACAGAAGGTGATAGCTTCCAACG
AGACACTTCCCCGTTCCAGATACTCTGGAGACCATTTAGCTTTCTTCCTG
TTGGGGAACAGCACGGAGCTGGGCTCAGTGCCAGAAGGGGGTGAGTGATA
GCTTCCAACGAGACACTTCCCCGTTCCAGATACTCTGGAGACCATTTAGC
TTTCTTCCTGTTGGGGAACAGCACGGAGCTGGGCTCAGTGCCAGAAGGGG
GTGA
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